Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1587c_(-)_1788169_1789170
DateFri Aug 2 13:30:17 BST 2019
Unique Job ID901b180e8e303f7d
SequenceVLAKLAAPGA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.514 Y:29.208 Z:33.855
Model (left) based on template c2qgpA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
Confidence and coverage
Confidence: 98.8% Coverage: 20%
67 residues ( 20% of your sequence) have been modelled with 98.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qgpA_



98.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
2c6ghcA_



98.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:5-methylcytosine-specific restriction enzyme a;
PDBTitle: modification dependent ecokmcra restriction endonuclease
3c5x1hS_



98.6 14
PDB header:protein transport
Chain: S: PDB Molecule:icmj (dotn);
PDBTitle: structure of legionella pneumophila dotn
4c5mkwA_



98.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:dna annealing helicase and endonuclease zranb3;
PDBTitle: crystal structure of the human zranb3 hnh domain
5c5vgbA_



97.6 17
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of nmecas9 hnh domain bound to anti-crispr acriic1
6c5h0mA_



97.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: crystal structure of deep-sea thermophilic bacteriophage gve2 hnh2 endonuclease with zinc ion
7c4ogeA_



96.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease domain protein;
PDBTitle: crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
8c5zmmD_



96.1 22
PDB header:dna binding protein
Chain: D: PDB Molecule:uncharacterized protein mcra;
PDBTitle: structure of the type iv phosphorothioation-dependent restriction2 endonuclease scomcra
9c5axwA_



95.5 13
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
10c6ghsA_



91.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:tagi restriction endonuclease;
PDBTitle: modification dependent tagi restriction endonuclease
11d2gykb1



90.4 15
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
12d2jb0b1



80.5 19
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
13c4cmqB_



71.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endonuclease cas9/csn1;
PDBTitle: crystal structure of mn-bound s.pyogenes cas9
14c5ew5C_



50.0 9
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
15c4qkoH_



49.4 16
PDB header:antimicrobial protein
Chain: H: PDB Molecule:pyocin-s2;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
16c7ceiB_



41.8 13
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
17c4uhpA_



37.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
18d1a1ga1



28.9 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
19c2drxA_



28.7 73
PDB header:structural protein
Chain: A: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
20c2drxB_



28.7 80
PDB header:structural protein
Chain: B: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
21d2dlka1



not modelled 28.4 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
22c2drtA_



not modelled 27.5 80
PDB header:structural protein
Chain: A: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-log-(pog)5
23c2drtB_



not modelled 27.5 80
PDB header:structural protein
Chain: B: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-log-(pog)5
24c2drxC_



not modelled 27.1 80
PDB header:structural protein
Chain: C: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-(log)2-(pog)4
25c2drtC_



not modelled 27.1 80
PDB header:structural protein
Chain: C: PDB Molecule:collagen like peptide;
PDBTitle: structure analysis of (pog)4-log-(pog)5
26d1zfda_



not modelled 24.1 36
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
27d1a1ia1



not modelled 23.8 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
28c1va1A_



not modelled 21.4 21
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1)
29c3pobC_



not modelled 20.9 67
PDB header:hydrolase
Chain: C: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of masp-1 cub2 domain in complex with the collagen-2 like domain of mbl
30c3ponB_



not modelled 20.9 67
PDB header:unknown function
Chain: B: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of mbl collagen-like peptide
31c3ponA_



not modelled 20.9 67
PDB header:unknown function
Chain: A: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of mbl collagen-like peptide
32c3pobB_



not modelled 20.9 67
PDB header:hydrolase
Chain: B: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of masp-1 cub2 domain in complex with the collagen-2 like domain of mbl
33c3pobD_



not modelled 20.9 67
PDB header:hydrolase
Chain: D: PDB Molecule:mbl collagen-like peptide;
PDBTitle: crystal structure of masp-1 cub2 domain in complex with the collagen-2 like domain of mbl
34d1a1ha1



not modelled 20.0 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
35c2mqsC_



not modelled 19.0 44
PDB header:hydrolase
Chain: C: PDB Molecule:thp_l_and_m_chain;
PDBTitle: transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
36c2mqsB_



not modelled 19.0 44
PDB header:hydrolase
Chain: B: PDB Molecule:thp_l_and_m_chain;
PDBTitle: transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
37d1ncsa_



not modelled 18.8 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
38d1ubdc3



not modelled 17.6 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
39d1sp2a_



not modelled 17.6 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
40d1u86a1



not modelled 17.4 43
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
41c2liyA_



not modelled 17.1 29
PDB header:hormone
Chain: A: PDB Molecule:epidermal patterning factor-like protein 9;
PDBTitle: plant peptide hormone regulating stomatal density
42d2glia3



not modelled 16.1 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
43d1aaya1



not modelled 16.1 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
44d1tf3a2



not modelled 15.5 21
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
45d2glia4



not modelled 14.4 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
46c1pxeA_



not modelled 14.3 45
PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1
47c6cd2C_



not modelled 14.2 43
PDB header:membrane protein/chaperone
Chain: C: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the papc usher bound to the chaperone-adhesin2 papd-papg
48d1zela1



not modelled 14.2 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rv2827c N-terminal domain-like
49c1cagC_



not modelled 14.1 43
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
50c1cagA_



not modelled 14.1 43
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
51d1f2ig1



not modelled 14.0 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
52d1tf6a1



not modelled 12.7 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
53c1cgdA_



not modelled 12.5 60
PDB header:collagen
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
54c1cgdB_



not modelled 12.5 60
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
55c1cgdC_



not modelled 12.5 60
PDB header:collagen
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: hydration structure of a collagen peptide
56c1cagB_



not modelled 12.5 60
PDB header:collagen
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal and molecular structure of a collagen-like peptide2 at 1.9 angstrom resolution
57c2l0zA_



not modelled 12.3 29
PDB header:viral protein
Chain: A: PDB Molecule:glycoprotein g2;
PDBTitle: solution structure of a zinc-binding domain from the junin virus2 envelope glycoprotein
58d2dlka2



not modelled 11.9 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
59c2e76D_



not modelled 11.4 15
PDB header:photosynthesis
Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
60c2f6aJ_



not modelled 11.0 60
PDB header:cell adhesion/structural protein
Chain: J: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
61c5anrC_



not modelled 10.4 32
PDB header:rna binding protein
Chain: C: PDB Molecule:eukaryotic translation initiation factor 4e transporter;
PDBTitle: structure of a human 4e-t - ddx6 - cnot1 complex
62c2f6aG_



not modelled 9.9 60
PDB header:cell adhesion/structural protein
Chain: G: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
63c2f6aI_



not modelled 9.9 60
PDB header:cell adhesion/structural protein
Chain: I: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
64c2f6aE_



not modelled 9.9 60
PDB header:cell adhesion/structural protein
Chain: E: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
65c2f6aH_



not modelled 9.9 60
PDB header:cell adhesion/structural protein
Chain: H: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
66c2f6aF_



not modelled 9.9 60
PDB header:cell adhesion/structural protein
Chain: F: PDB Molecule:collagen;
PDBTitle: collagen adhesin and collagen complex structure
67d1ubdc4



not modelled 9.9 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
68c2lb0A_



not modelled 9.8 17
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
69c2lazA_



not modelled 9.8 17
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
70d1imta2



not modelled 9.7 16
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Colipase-like
Family:Colipase-like
71c3le4A_



not modelled 9.2 20
PDB header:nuclear protein
Chain: A: PDB Molecule:microprocessor complex subunit dgcr8;
PDBTitle: crystal structure of the dgcr8 dimerization domain
72d1tf3a1



not modelled 9.2 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
73c2kq0A_



not modelled 9.0 21
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea
74c2jydA_



not modelled 8.7 40
PDB header:metal binding protein
Chain: A: PDB Molecule:f5 domain of myelin transcription factor 1;
PDBTitle: structure of the fifth zinc finger of myelin transcription2 factor 1
75c5g2xC_



not modelled 8.6 15
PDB header:transferase
Chain: C: PDB Molecule:group ii intron-encoded protein ltra;
PDBTitle: structure a of group ii intron complexed with its reverse2 transcriptase
76c2mqsD_



not modelled 8.1 42
PDB header:hydrolase
Chain: D: PDB Molecule:thp_t_chain;
PDBTitle: transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
77c1rb8J_



not modelled 7.9 50
PDB header:virus/dna
Chain: J: PDB Molecule:small core protein;
PDBTitle: the phix174 dna binding protein j in two different capsid2 environments.
78c1zelA_



not modelled 7.7 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rv2827c;
PDBTitle: crystal structure of rv2827c protein from mycobacterium tuberculosis
79d1p9pa_



not modelled 7.3 29
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:tRNA(m1G37)-methyltransferase TrmD
80d1bhia_



not modelled 7.0 63
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
81c1tk7A_



not modelled 6.8 11
PDB header:signaling protein
Chain: A: PDB Molecule:cg4244-pb;
PDBTitle: nmr structure of ww domains (ww3-4) from suppressor of2 deltex
82c6etxR_



not modelled 6.5 36
PDB header:dna binding protein
Chain: R: PDB Molecule:ino80 complex subunit b;
PDBTitle: cryo-em structure of the human ino80 complex bound to nucleosome
83c4gyxB_



not modelled 6.5 75
PDB header:structural protein, blood clotting
Chain: B: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
84c4gyxA_



not modelled 6.5 75
PDB header:structural protein, blood clotting
Chain: A: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
85c2jtuA_



not modelled 6.4 58
PDB header:toxin
Chain: A: PDB Molecule:i-superfamily conotoxin r11a;
PDBTitle: nmr structure of iota-rxia(38)
86c4gyxC_



not modelled 6.4 67
PDB header:structural protein, blood clotting
Chain: C: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
87c2jryA_



not modelled 6.4 58
PDB header:toxin
Chain: A: PDB Molecule:i-superfamily conotoxin r11a;
PDBTitle: structure and sodium channel activity of an excitatory i1-2 superfamily conotoxin
88d1kp0a1



not modelled 6.3 50
Fold:Ribonuclease H-like motif
Superfamily:Creatinase/prolidase N-terminal domain
Family:Creatinase/prolidase N-terminal domain
89c1zw8A_



not modelled 6.2 38
PDB header:transcription
Chain: A: PDB Molecule:zinc-responsive transcriptional regulator zap1;
PDBTitle: solution structure of a zap1 zinc-responsive domain2 provides insights into metalloregulatory transcriptional3 repression in saccharomyces cerevisiae
90c2y5tG_



not modelled 6.0 64
PDB header:immune system
Chain: G: PDB Molecule:c1;
PDBTitle: crystal structure of the pathogenic autoantibody ciic1 in complex with2 the triple-helical c1 peptide
91d2evra1



not modelled 6.0 21
Fold:SH3-like barrel
Superfamily:Prokaryotic SH3-related domain
Family:Spr N-terminal domain-like
92c2v53B_



not modelled 6.0 62
PDB header:cell adhesion
Chain: B: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
93c2v53C_



not modelled 6.0 62
PDB header:cell adhesion
Chain: C: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
94c2v53D_



not modelled 6.0 62
PDB header:cell adhesion
Chain: D: PDB Molecule:collagen alpha-1(iii) chain;
PDBTitle: crystal structure of a sparc-collagen complex
95c4zhjA_



not modelled 5.9 43
PDB header:metal binding protein
Chain: A: PDB Molecule:mg-chelatase subunit chlh;
PDBTitle: crystal structure of the catalytic subunit of magnesium chelatase
96c5ydyA_



not modelled 5.9 17
PDB header:signaling protein
Chain: A: PDB Molecule:ww2 domain and ppxy motif complex;
PDBTitle: nmr structure of yap1-2 ww2 domain with lats1 ppxy motif complex
97c3pg6D_



not modelled 5.9 27
PDB header:ligase
Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l;
PDBTitle: the carboxyl terminal domain of human deltex 3-like
98c1bkvA_



not modelled 5.8 67
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
99d2f21a1



not modelled 5.5 17
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain

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