Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1590_(-)_1791341_1791580
DateFri Aug 2 13:30:18 BST 2019
Unique Job IDe7a682b0f8441212
SequenceMVEIVAGKQR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:19.705 Y:19.741 Z:26.510
Model (left) based on template c6o3pA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
Confidence and coverage
Confidence: 81.4% Coverage: 29%
23 residues ( 29% of your sequence) have been modelled with 81.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6o3pA_
81.4 30
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
2c2gb5B_
80.9 22
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
3c5y06A_
59.8 15
PDB header:unknown function
Chain: A: PDB Molecule:msmeg_4306;
PDBTitle: structural characterization of msmeg_4306 from mycobacterium smegmatis
4d1wj0a_
37.8 75
Fold:SBT domain
Superfamily:SBT domain
Family:SBT domain
5d1ul4a_
34.6 60
Fold:SBT domain
Superfamily:SBT domain
Family:SBT domain
6c2l9zA_
33.8 35
PDB header:transcription
Chain: A: PDB Molecule:pr domain zinc finger protein 4;
PDBTitle: zinc knuckle in prdm4
7c5l9wC_
32.6 29
PDB header:ligase
Chain: C: PDB Molecule:acetophenone carboxylase beta subunit;
PDBTitle: crystal structure of the apc core complex
8d1ul5a_
28.0 63
Fold:SBT domain
Superfamily:SBT domain
Family:SBT domain
9d1pn0a2
22.1 35
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
10c2l4jA_
21.8 27
PDB header:transcription
Chain: A: PDB Molecule:yes-associated protein 2 (yap2);
PDBTitle: yap ww2
11c5m45I_
21.6 28
PDB header:ligase
Chain: I: PDB Molecule:acetone carboxylase gamma subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
12c4gndC_
19.7 26
PDB header:transferase
Chain: C: PDB Molecule:histone-lysine n-methyltransferase nsd3;
PDBTitle: crystal structure of nsd3 tandem phd5-c5hch domains
13d1tk7a2
19.5 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
14d1nnqa2
19.3 45
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
15c5d5hA_
18.9 24
PDB header:isomerase
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of mycobacterium tuberculosis topoisomerase i
16c2lawA_
18.7 33
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:yorkie homolog;
PDBTitle: structure of the second ww domain from human yap in complex with a2 human smad1 derived peptide
17c2kq0A_
18.4 31
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: human nedd4 3rd ww domain complex with ebola zaire virus matrix2 protein vp40 derived peptide ilptappeymea
18c2jmfA_
18.2 33
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase suppressor of deltex;
PDBTitle: solution structure of the su(dx) ww4- notch py peptide2 complex
19c1dvbA_
17.2 33
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
20c2zajA_
17.0 20
PDB header:protein binding
Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz
PDBTitle: solution structure of the short-isoform of the second ww2 domain from the human membrane-associated guanylate kinase,3 ww and pdz domain-containing protein 1 (magi-1)
21d1yuza2
not modelled 16.7 36
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
22c2hr5B_
not modelled 16.4 50
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
23c3cngC_
not modelled 16.2 21
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
24c2mdwA_
not modelled 15.9 56
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of a strand-swapped dimer of the ww domain
25c2lvuA_
not modelled 15.8 50
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 10
26c3g5rA_
not modelled 15.4 38
PDB header:transferase
Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)-
PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate
27c5fjaI_
not modelled 14.5 22
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase iii subunit rpc10;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
28c4c2mX_
not modelled 14.3 21
PDB header:transcription
Chain: X: PDB Molecule:dna-directed rna polymerase i subunit rpa12;
PDBTitle: structure of rna polymerase i at 2.8 a resolution
29c2xhqA_
not modelled 12.9 33
PDB header:hydrolase
Chain: A: PDB Molecule:archaemetzincin;
PDBTitle: crystal structure of archaemetzincin (amza) from archaeoglobus2 fulgidus at 1.45 a resolution
30c4kisA_
not modelled 12.8 29
PDB header:recombination/dna
Chain: A: PDB Molecule:putative integrase [bacteriophage a118];
PDBTitle: crystal structure of a lsr-dna complex
31c3lmcA_
not modelled 12.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase, zinc-dependent;
PDBTitle: crystal structure of zinc-dependent peptidase from methanocorpusculum2 labreanum (strain z), northeast structural genomics consortium target3 mur16
32d1lkoa2
not modelled 12.8 33
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
33c2n8tA_
not modelled 12.0 27
PDB header:ligase/peptide
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the rnedd4 ww2 domain-cx43ct peptide complex by2 nmr
34c2lb0A_
not modelled 11.9 40
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
35c1wr4A_
not modelled 11.9 33
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase nedd4-2;
PDBTitle: solution structure of the second ww domain of nedd4-2
36c2lazA_
not modelled 11.9 40
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
37c1ymzA_
not modelled 11.7 40
PDB header:unknown function
Chain: A: PDB Molecule:cc45;
PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis
38c2ysfA_
not modelled 11.7 33
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: solution structure of the fourth ww domain from the human2 e3 ubiquitin-protein ligase itchy homolog, itch
39d2jmfa1
not modelled 11.6 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
40c1wr7A_
not modelled 11.5 33
PDB header:ligase
Chain: A: PDB Molecule:nedd4-2;
PDBTitle: solution structure of the third ww domain of nedd4-2
41c4iloA_
not modelled 11.4 44
PDB header:unknown function
Chain: A: PDB Molecule:ct398;
PDBTitle: 2.12a resolution structure of ct398 from chlamydia trachomatis
42c2yshA_
not modelled 11.2 33
PDB header:protein binding
Chain: A: PDB Molecule:growth-arrest-specific protein 7;
PDBTitle: solution structure of the ww domain from the human growth-2 arrest-specific protein 7, gas-7
43c2kykA_
not modelled 11.0 33
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase itchy homolog;
PDBTitle: the sandwich region between two lmp2a py motif regulates the2 interaction between aip4ww2domain and py motif
44d1tk7a1
not modelled 10.9 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
45d1dgsa1
not modelled 10.8 43
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:NAD+-dependent DNA ligase, domain 3
46c5ydyA_
not modelled 10.7 33
PDB header:signaling protein
Chain: A: PDB Molecule:ww2 domain and ppxy motif complex;
PDBTitle: nmr structure of yap1-2 ww2 domain with lats1 ppxy motif complex
47c2ysgA_
not modelled 10.7 27
PDB header:protein binding
Chain: A: PDB Molecule:syntaxin-binding protein 4;
PDBTitle: solution structure of the ww domain from the human syntaxin-2 binding protein 4
48c2mkdA_
not modelled 10.3 33
PDB header:dna binding protein
Chain: A: PDB Molecule:zinc finger protein 346;
PDBTitle: human jaz zf3 residues 168-227
49c2x7mA_
not modelled 10.2 33
PDB header:hydrolase
Chain: A: PDB Molecule:archaemetzincin;
PDBTitle: crystal structure of archaemetzincin (amza) from methanopyrus2 kandleri at 1.5 a resolution
50c6j69A_
not modelled 10.0 33
PDB header:cell cycle
Chain: A: PDB Molecule:protein kibra;
PDBTitle: structure of kibra and dendrin complex
51c1u5kA_
not modelled 10.0 29
PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco
52c6n2oB_
not modelled 9.8 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyruvate ferredoxin/flavodoxin oxidoreductase, beta
PDBTitle: 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus2 with 2-oxoglutarate, coenzyme a and succinyl-coa bound
53d1dsva_
not modelled 9.6 40
Fold:Retrovirus zinc finger-like domains
Superfamily:Retrovirus zinc finger-like domains
Family:Retrovirus zinc finger-like domains
54c2nb9A_
not modelled 9.5 41
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of zitp zinc finger
55c3hkzP_
not modelled 9.2 31
PDB header:transferase
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
56d1fftb1
not modelled 9.1 20
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
57c5h4uB_
not modelled 8.8 47
PDB header:hydrolase
Chain: B: PDB Molecule:endo-beta-1,4-glucanase;
PDBTitle: crystal structure of cellulase from antarctic springtail, cryptopygus2 antarcticus
58c2dmvA_
not modelled 8.5 47
PDB header:ligase
Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase;
PDBTitle: solution structure of the second ww domain of itchy homolog2 e3 ubiquitin protein ligase (itch)
59c3d5d6_
not modelled 8.3 33
PDB header:ribosome
Chain: 6: PDB Molecule:50s ribosomal protein l33;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of the second 70s ribosome. the entire3 crystal structure contains two 70s ribosomes as described in remark4 400.
60d2f21a1
not modelled 8.2 47
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
61c3gh1A_
not modelled 8.2 40
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted nucleotide-binding protein;
PDBTitle: crystal structure of predicted nucleotide-binding protein from vibrio2 cholerae
62c1e0mA_
not modelled 8.0 27
PDB header:de novo protein
Chain: A: PDB Molecule:wwprototype;
PDBTitle: prototype ww domain
63c4rulA_
not modelled 8.0 27
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 1;
PDBTitle: crystal structure of full-length e.coli topoisomerase i in complex2 with ssdna
64c5flmI_
not modelled 7.9 24
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9;
PDBTitle: structure of transcribing mammalian rna polymerase ii
65c2c6bA_
not modelled 7.8 43
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin-protein ligase e3 mdm2;
PDBTitle: solution structure of the c4 zinc-finger domain of hdm2
66d1k9ra_
not modelled 7.7 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
67c2dwvB_
not modelled 7.7 27
PDB header:protein binding
Chain: B: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the second ww domain from mouse2 salvador homolog 1 protein (mww45)
68c2mzjA_
not modelled 7.7 14
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolar protein 6;
PDBTitle: nmr-structure of the nop6-rbd from s. cerevisiae
69d1d1la_
not modelled 7.6 29
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
70d4croa_
not modelled 7.4 29
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
71c2pijB_
not modelled 7.4 29
PDB header:transcription
Chain: B: PDB Molecule:prophage pfl 6 cro;
PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5
72d1i5hw_
not modelled 7.2 40
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
73c4uxjB_
not modelled 7.2 13
PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: leishmania major thymidine kinase in complex with dttp
74c1zr9A_
not modelled 7.1 30
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 593;
PDBTitle: solution structure of a human c2h2-type zinc finger protein
75d1zr9a1
not modelled 7.1 30
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
76c2cr8A_
not modelled 6.8 43
PDB header:cell cycle
Chain: A: PDB Molecule:mdm4 protein;
PDBTitle: solution structure of the zf-ranbp domain of p53-binding2 protein mdm4
77d1f8ab1
not modelled 6.7 53
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
78c3na7A_
not modelled 6.7 24
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
79d1l8fa_
not modelled 6.4 40
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:Eng V-like
80c1i3qI_
not modelled 6.4 21
PDB header:transcription
Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
81c1yiuA_
not modelled 6.4 40
PDB header:ligase
Chain: A: PDB Molecule:itchy e3 ubiquitin protein ligase;
PDBTitle: itch e3 ubiquitin ligase ww3 domain
82c2djyA_
not modelled 6.3 40
PDB header:ligase/signaling protein
Chain: A: PDB Molecule:smad ubiquitination regulatory factor 2;
PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex
83c5zb8B_
not modelled 6.3 38
PDB header:dna binding protein
Chain: B: PDB Molecule:pfuendoq;
PDBTitle: crystal structure of the novel lesion-specific endonuclease pfuendoq2 from pyrococcus furiosus
84c5m45K_
not modelled 6.1 31
PDB header:ligase
Chain: K: PDB Molecule:acetone carboxylase beta subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
85d1zu1a2
not modelled 6.0 15
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
86d1pina1
not modelled 5.9 53
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
87c1x31D_
not modelled 5.8 57
PDB header:oxidoreductase
Chain: D: PDB Molecule:sarcosine oxidase delta subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
88c6cxoB_
not modelled 5.8 17
PDB header:immune system
Chain: B: PDB Molecule:complement component c9;
PDBTitle: complement component-9
89c3l4hA_
not modelled 5.8 27
PDB header:protein binding
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase hecw1;
PDBTitle: helical box domain and second ww domain of the human e3 ubiquitin-2 protein ligase hecw1
90c2ez5W_
not modelled 5.7 20
PDB header:signalling protein,ligase
Chain: W: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: solution structure of the dnedd4 ww3* domain- comm lpsy2 peptide complex
91d1i8gb_
not modelled 5.7 53
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
92c4rdmB_
not modelled 5.7 20
PDB header:hydrolase/dna
Chain: B: PDB Molecule:restriction endonuclease r.ngovii;
PDBTitle: crystal structure of r.ngoavii restriction endonuclease b3 domain with2 cognate dna
93c2lcqA_
not modelled 5.7 27
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
94c2jrrA_
not modelled 5.7 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of q5lls5 from silicibacter2 pomeroyi. northeast structural genomics consortium target3 sir90
95d1isua_
not modelled 5.6 43
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
96c6hu9n_
not modelled 5.6 25
PDB header:oxidoreductase/electron transport
Chain: N: PDB Molecule:cytochrome b;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
97c1cl4A_
not modelled 5.5 44
PDB header:viral protein
Chain: A: PDB Molecule:protein (gag polyprotein);
PDBTitle: nucleocapsid protein from mason-pfizer monkey virus (mpmv)
98d2itka1
not modelled 5.4 40
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
99d2cona1
not modelled 5.3 36
Fold:Rubredoxin-like
Superfamily:NOB1 zinc finger-like
Family:NOB1 zinc finger-like

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