Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1594_(nadA)_1794763_1795812
DateFri Aug 2 13:30:18 BST 2019
Unique Job ID375bb001322147d0
SequenceMTVLNRTDTL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.679 Y:48.820 Z:57.045
Model (left) based on template c4p3xA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:quinolinate synthase a;
PDBTitle: structure of the fe4s4 quinolinate synthase nada from thermotoga2 maritima
Confidence and coverage
Confidence:100.0% Coverage: 86%
299 residues ( 86% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4p3xA_



100.0 38
PDB header:transferase
Chain: A: PDB Molecule:quinolinate synthase a;
PDBTitle: structure of the fe4s4 quinolinate synthase nada from thermotoga2 maritima
2c2qs0A_



100.0 42
PDB header:biosynthetic protein
Chain: A: PDB Molecule:quinolinate synthetase a;
PDBTitle: quinolinate synthase from pyrococcus furiosus
3d1wzua1



100.0 43
Fold:NadA-like
Superfamily:NadA-like
Family:NadA-like
4c6mgdA_



84.4 14
PDB header:transferase
Chain: A: PDB Molecule:capsular polysaccharide export system protein kpsc;
PDBTitle: thermosulfurimonas dismutans kpsc, beta kdo 2,4 transferase
5c5ldrA_



71.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:beta-d-galactosidase;
PDBTitle: crystal structure of a cold-adapted dimeric beta-d-galactosidase from2 paracoccus sp. 32d strain in complex with galactose
6c6j7aB_



66.8 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:heme oxygenase 1,nadph--cytochrome p450 reductase;
PDBTitle: fusion protein of heme oxygenase-1 and nadph cytochrome p450 reductase2 (17aa)
7d1xhja_



62.4 24
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
8c1zq1B_



59.6 27
PDB header:lyase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi
9d1j97a_



58.2 18
Fold:HAD-like
Superfamily:HAD-like
Family:Phosphoserine phosphatase
10c3p04B_



56.6 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized bcr;
PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8
11c6b6lB_



54.5 26
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, sugar binding domain protein;
PDBTitle: the crystal structure of glycosyl hydrolase family 2 (gh2) member from2 bacteroides cellulosilyticus dsm 14838
12c5t9gD_



54.1 24
PDB header:hydrolase
Chain: D: PDB Molecule:glycoside hydrolase;
PDBTitle: crystal structure of bugh2cwt in complex with galactoisofagomine
13d1hrua_



53.9 14
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
14c3zihB_



52.8 19
PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein sepf;
PDBTitle: bacillus subtilis sepf, c-terminal domain
15c6dxuB_



51.9 21
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, tim barrel domain protein;
PDBTitle: crystal structure of parabacteroides merdae beta-glucuronidase (gus)
16c3fn9B_



49.6 17
PDB header:hydrolase
Chain: B: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
17c6d8kD_



49.5 20
PDB header:hydrolase
Chain: D: PDB Molecule:glycosyl hydrolase family 2, sugar binding domain protein;
PDBTitle: bacteroides multiple species beta-glucuronidase
18c5nkzC_



48.7 16
PDB header:transferase
Chain: C: PDB Molecule:peroxin 22;
PDBTitle: crystal structure of h. polymorpha ubiquitin conjugating enzyme pex4p2 in complex with soluble domain of pex22p
19c3cmgA_



48.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:putative beta-galactosidase;
PDBTitle: crystal structure of putative beta-galactosidase from bacteroides2 fragilis
20c3p04A_



48.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized bcr;
PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8
21d1pswa_



not modelled 47.5 16
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:ADP-heptose LPS heptosyltransferase II
22c2e55D_



not modelled 47.0 20
PDB header:transferase
Chain: D: PDB Molecule:uracil phosphoribosyltransferase;
PDBTitle: structure of aq2163 protein from aquifex aeolicus
23d1veha_



not modelled 44.6 11
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
24c5un8B_



not modelled 43.8 17
PDB header:hydrolase
Chain: B: PDB Molecule:protein o-glcnacase;
PDBTitle: crystal structure of human o-glcnacase in complex with glycopeptide2 p53
25c4ypjB_



not modelled 42.9 17
PDB header:hydrolase
Chain: B: PDB Molecule:beta galactosidase;
PDBTitle: x-ray structure of the mutant of glycoside hydrolase
26c6mvgB_



not modelled 42.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:beta-glucuronidase;
PDBTitle: crystal structure of fmn-binding beta-glucuronidase from ruminococcus2 gnavus
27c2q5cA_



not modelled 42.5 13
PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
28c3hbmA_



not modelled 42.2 9
PDB header:hydrolase
Chain: A: PDB Molecule:udp-sugar hydrolase;
PDBTitle: crystal structure of pseg from campylobacter jejuni
29c3p9zA_



not modelled 42.2 22
PDB header:ligase
Chain: A: PDB Molecule:uroporphyrinogen iii cosynthase (hemd);
PDBTitle: crystal structure of uroporphyrinogen-iii synthetase from helicobacter2 pylori 26695
30c4cucA_



not modelled 41.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: unravelling the multiple functions of the architecturally intricate2 streptococcus pneumoniae beta-galactosidase, bgaa.
31c5uj6A_



not modelled 41.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolases family 2, sugar binding domain protein;
PDBTitle: crystal structure of bacteroides uniformis beta-glucuronidase
32c3uueA_



not modelled 40.5 7
PDB header:hydrolase
Chain: A: PDB Molecule:lip1, secretory lipase (family 3);
PDBTitle: crystal structure of mono- and diacylglycerol lipase from malassezia2 globosa
33c4lkuB_



not modelled 40.0 24
PDB header:transport protein
Chain: B: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
34c4lkuA_



not modelled 40.0 24
PDB header:transport protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
35c5d95A_



not modelled 39.8 13
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class-iii;
PDBTitle: structure of thermostable omega-transaminase
36c6a4cA_



not modelled 39.3 25
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein mxan_0049;
PDBTitle: solution structure of mxan_0049
37c6mgbA_



not modelled 39.1 29
PDB header:transferase
Chain: A: PDB Molecule:capsular polysaccharide export system protein kpsc;
PDBTitle: thermosulfurimonas dismutans kpsc, beta kdo 2,4 transferase
38c6d1pB_



not modelled 36.9 21
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolases family 2, sugar binding domain protein;
PDBTitle: apo structure of bacteroides uniformis beta-glucuronidase 3
39c6ed1B_



not modelled 36.8 24
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 2, sugar binding domain protein;
PDBTitle: bacteroides dorei beta-glucuronidase
40d2pjua1



not modelled 36.5 17
Fold:Chelatase-like
Superfamily:PrpR receptor domain-like
Family:PrpR receptor domain-like
41c6mvfA_



not modelled 35.5 21
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase/beta-glucuronidase;
PDBTitle: crystal structure of fmn-binding beta-glucuronidase from2 facaelibacterium prausnitzii l2-6
42c4ra6A_



not modelled 35.3 25
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of linker less pyrococcus furiosus l-asparaginase
43c3pg6D_



not modelled 35.1 32
PDB header:ligase
Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l;
PDBTitle: the carboxyl terminal domain of human deltex 3-like
44c3tovB_



not modelled 34.1 11
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase family 9;
PDBTitle: the crystal structure of the glycosyl transferase family 9 from2 veillonella parvula dsm 2008
45c6dxuA_



not modelled 33.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 2, tim barrel domain protein;
PDBTitle: crystal structure of parabacteroides merdae beta-glucuronidase (gus)
46c5j21C_



not modelled 32.8 19
PDB header:hydrolase
Chain: C: PDB Molecule:bifunctional oligoribonuclease and pap phosphatase nrna;
PDBTitle: structure of bacillus nanornase a (wt)
47c1jz6C_



not modelled 31.5 19
PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole
48d1z7da1



not modelled 31.3 10
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
49c3gm8A_



not modelled 31.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 2, candidate beta-glycosidase;
PDBTitle: crystal structure of a beta-glycosidase from bacteroides vulgatus
50d1wova1



not modelled 30.7 23
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:Eukaryotic type heme oxygenase
51c5kqwD_



not modelled 30.7 9
PDB header:transferase
Chain: D: PDB Molecule:4-aminobutyrate transaminase;
PDBTitle: directed evolution of transaminases by ancestral reconstruction. using2 old proteins for new chemistries
52c5dmyA_



not modelled 29.3 21
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: beta-galactosidase - construct 33-930
53c2y1hA_



not modelled 27.4 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative deoxyribonuclease tatdn3;
PDBTitle: crystal structure of the human tatd-domain protein 3 (tatdn3)
54c2ekcA_



not modelled 26.8 20
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
55c4lkuD_



not modelled 26.7 24
PDB header:transport protein
Chain: D: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
56c5gw8A_



not modelled 26.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical secretory lipase (family 3);
PDBTitle: crystal structure of a putative dag-like lipase (mgmdl2) from2 malassezia globosa
57c4lkuC_



not modelled 26.5 24
PDB header:transport protein
Chain: C: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
58c5g2pA_



not modelled 25.6 20
PDB header:transferase
Chain: A: PDB Molecule:transaminase;
PDBTitle: the crystal structure of a s-selective transaminase from2 arthrobacter sp.
59c6oviA_



not modelled 25.6 20
PDB header:lyase
Chain: A: PDB Molecule:keto-deoxy-phosphogluconate aldolase;
PDBTitle: crystal structure of kdpg aldolase from legionella pneumophila with2 pyruvate captured at low ph as a covalent carbinolamine intermediate
60c2d6fA_



not modelled 25.6 30
PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln)
61c2xsbA_



not modelled 25.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: ogoga pugnac complex
62c6j9mF_



not modelled 25.0 50
PDB header:hydrolase/hydrolase inhibitor
Chain: F: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: nmebh+acriic2
63c5t98B_



not modelled 24.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:glycoside hydrolase;
PDBTitle: crystal structure of bugh2awt
64c6iz9B_



not modelled 24.7 19
PDB header:transferase
Chain: B: PDB Molecule:beta-transaminase;
PDBTitle: crystal structure of the apo form of a beta-transaminase from2 mesorhizobium sp. strain luk
65c3nm3D_



not modelled 24.7 24
PDB header:transferase
Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme;
PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes
66c3mv14_



not modelled 23.9 19
PDB header:hydrolase
Chain: 4: PDB Molecule:beta-galactosidase;
PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium
67c6j9mA_



not modelled 23.9 50
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: nmebh+acriic2
68c2cjdA_



not modelled 23.8 16
PDB header:transferase
Chain: A: PDB Molecule:l-lysine-epsilon aminotransferase;
PDBTitle: lysine aminotransferase from m. tuberculosis in external aldimine form
69d1agxa_



not modelled 23.6 27
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
70c2gzxB_



not modelled 23.5 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative tatd related dnase;
PDBTitle: crystal structure of the tatd deoxyribonuclease mw0446 from2 staphylococcus aureus. northeast structural genomics consortium3 target zr237.
71d1zq1a2



not modelled 23.2 24
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
72c5ey5A_



not modelled 23.2 20
PDB header:lyase
Chain: A: PDB Molecule:lbcats-a;
PDBTitle: lbcats
73d1jcua_



not modelled 23.1 17
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
74c2r8zC_



not modelled 23.1 9
PDB header:hydrolase
Chain: C: PDB Molecule:3-deoxy-d-manno-octulosonate 8-phosphate phosphatase;
PDBTitle: crystal structure of yrbi phosphatase from escherichia coli in complex2 with a phosphate and a calcium ion
75c5wmiA_



not modelled 22.2 18
PDB header:transferase
Chain: A: PDB Molecule:bifunctional aspartate aminotransferase and
PDBTitle: arabidopsis thaliana prephenate aminotransferase mutant- t84v
76c3m1pA_



not modelled 22.1 11
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
77c3k7pA_



not modelled 22.1 11
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
78d1xi3a_



not modelled 21.7 14
Fold:TIM beta/alpha-barrel
Superfamily:Thiamin phosphate synthase
Family:Thiamin phosphate synthase
79c3sggA_



not modelled 21.5 22
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical hydrolase;
PDBTitle: crystal structure of a putative hydrolase (bt_2193) from bacteroides2 thetaiotaomicron vpi-5482 at 1.25 a resolution
80c1nijA_



not modelled 21.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
81c3iz6A_



not modelled 21.5 12
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
82c5diyB_



not modelled 20.8 11
PDB header:hydrolase
Chain: B: PDB Molecule:hyaluronidase;
PDBTitle: thermobaculum terrenum o-glcnac hydrolase mutant - d120n
83c3bgaB_



not modelled 20.2 19
PDB header:hydrolase
Chain: B: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase from bacteroides2 thetaiotaomicron vpi-5482
84c4lkuE_



not modelled 19.9 25
PDB header:transport protein
Chain: E: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of the c-terminal domain of the e. coli mechanosensitive2 channel of large conductance
85c4rajA_



not modelled 19.9 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of heme oxygenase 2 from chlamydomonas reinhardtii2 without heme.
86c3ssoE_



not modelled 19.8 16
PDB header:transferase
Chain: E: PDB Molecule:methyltransferase;
PDBTitle: myce methyltransferase from the mycinamycin biosynthetic pathway in2 complex with mg and sah, crystal form 2
87d1jr2a_



not modelled 19.7 13
Fold:HemD-like
Superfamily:HemD-like
Family:HemD-like
88c1jr2A_



not modelled 19.7 13
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: structure of uroporphyrinogen iii synthase
89c5xxuM_



not modelled 18.9 15
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein es12;
PDBTitle: small subunit of toxoplasma gondii ribosome
90c2zsmA_



not modelled 18.8 23
PDB header:isomerase
Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form
91d1ojra_



not modelled 18.8 7
Fold:AraD/HMP-PK domain-like
Superfamily:AraD/HMP-PK domain-like
Family:AraD-like aldolase/epimerase
92c6etzA_



not modelled 18.8 26
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: cold-adapted beta-d-galactosidase from arthrobacter sp. 32cb
93d1pj3a1



not modelled 18.1 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
94c3g7nA_



not modelled 18.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of a triacylglycerol lipase from penicillium2 expansum at 1.3
95d1k7ja_



not modelled 17.9 9
Fold:YrdC/RibB
Superfamily:YrdC/RibB
Family:YrdC-like
96c3m1yA_



not modelled 17.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:phosphoserine phosphatase (serb);
PDBTitle: crystal structure of a phosphoserine phosphatase (serb) from2 helicobacter pylori
97c5cgaC_



not modelled 17.4 22
PDB header:transferase
Chain: C: PDB Molecule:hydroxyethylthiazole kinase;
PDBTitle: structure of hydroxyethylthiazole kinase thim from staphylococcus2 aureus in complex with substrate analog 2-(1,3,5-trimethyl-1h-3 pyrazole-4-yl)ethanol
98c3l7mC_



not modelled 17.3 6
PDB header:structural protein
Chain: C: PDB Molecule:teichoic acid biosynthesis protein f;
PDBTitle: structure of the wall teichoic acid polymerase tagf, h548a
99c1yq2C_



not modelled 16.9 21
PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: beta-galactosidase from arthrobacter sp. c2-2 (isoenzyme c2-2 2-1)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite