Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1598c_(-)_1799080_1799490
DateFri Aug 2 13:30:19 BST 2019
Unique Job IDea11bab3f6653873
SequenceMSAKDHPNNA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.195 Y:34.160 Z:33.802
Model (left) based on template c3r5zB_
Top template information
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
Confidence and coverage
Confidence: 99.9% Coverage: 81%
110 residues ( 81% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3r5zB_



99.9 20
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
2c3r5yC_



99.9 20
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
3c4y9iA_



99.9 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
4c3h96B_



99.9 19
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
5c3r5wO_



99.9 21
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
6c2iabB_



97.7 16
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
7c3f7eB_



97.5 13
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
8d1rfea_



97.4 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
9d1w9aa_



97.4 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
10d2asfa1



96.6 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
11d2htia1



96.4 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
12c2htiA_



96.4 9
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
13c2q9kA_



96.3 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
14d2i02a1



96.1 6
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
15c2htdB_



96.1 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
16d2hq7a1



96.0 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
17c4zkyB_



95.9 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
18c5escD_



95.8 15
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
19d2hq9a1



95.8 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
20c3db0B_



95.7 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
21c3tgvD_



not modelled 95.6 10
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
22d1vl7a_



not modelled 95.5 19
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
23c2hhzA_



not modelled 95.3 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
24d2fura1



not modelled 95.3 6
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
25c6eciQ_



not modelled 95.1 6
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
26d1t9ma_



not modelled 94.8 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
27c3dnhB_



not modelled 94.7 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
28c3u0iA_



not modelled 94.5 10
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
29c2a2jA_



not modelled 94.5 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
30d2a2ja1



not modelled 94.4 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
31d2fg9a1



not modelled 94.3 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
32d2arza1



not modelled 94.0 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
33d2fhqa1



not modelled 93.9 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
34c2re7A_



not modelled 93.7 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
35c3ec6A_



not modelled 93.5 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
36c3fkhB_



not modelled 93.2 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
37d1ty9a_



not modelled 92.9 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
38c2ig6B_



not modelled 92.6 6
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
39c4ybnB_



not modelled 92.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-nucleotide-binding protein;
PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
40c1nrgA_



not modelled 91.7 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
41d1nrga_



not modelled 91.7 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
42c5bncB_



not modelled 90.4 16
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
43c3cp3A_



not modelled 89.5 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
44d2ptfa1



not modelled 88.0 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
45d1ci0a_



not modelled 87.7 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
46c2ptfB_



not modelled 87.3 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein mth_863;
PDBTitle: crystal structure of protein mth_863 from methanobacterium2 thermoautotrophicum bound to fmn
47c3gasA_



not modelled 86.1 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
48d1dnla_



not modelled 85.0 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
49c4hmwB_



not modelled 84.9 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
50c2qeaB_



not modelled 75.5 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative general stress protein 26;
PDBTitle: crystal structure of a putative general stress protein 26 (jann_0955)2 from jannaschia sp. ccs1 at 2.46 a resolution
51c6rk0A_



not modelled 75.2 14
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the flavocytochrome anf3 from azotobacter vinelandii
52c3u34D_



not modelled 66.2 7
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
53d2vpaa1



not modelled 65.0 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
54c3dmbA_



not modelled 60.3 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
55d1flma_



not modelled 57.7 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
56c2i51B_



not modelled 38.3 9
PDB header:flavoprotein
Chain: B: PDB Molecule:uncharacterized conserved protein of cog5135;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn2 binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at3 1.40 a resolution
57d1xhna1



not modelled 31.9 8
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
58c2ou5B_



not modelled 25.3 12
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
59d2imla1



not modelled 24.8 10
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
60d2nr4a1



not modelled 23.4 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
61d2arca_



not modelled 22.8 15
Fold:Double-stranded beta-helix
Superfamily:Regulatory protein AraC
Family:Regulatory protein AraC
62c4n7rD_



not modelled 19.9 11
PDB header:oxidoreductase/protein binding
Chain: D: PDB Molecule:genomic dna, chromosome 3, p1 clone: mxl8;
PDBTitle: crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
63c2ol5B_



not modelled 12.5 11
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
64c2o6pA_



not modelled 11.7 15
PDB header:transport protein
Chain: A: PDB Molecule:iron-regulated surface determinant protein c;
PDBTitle: crystal structure of the heme-isdc complex
65c2e7dA_



not modelled 11.3 10
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein isdh;
PDBTitle: crystal structure of a neat domain from staphylococcus aureus
66c1ztnA_



not modelled 10.3 100
PDB header:transport protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily c member 4;
PDBTitle: inactivation gate of potassium channel raw3, nmr, 8 structures
67d2o6pa1



not modelled 10.0 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:NEAT domain-like
Family:NEAT domain
68c2x8nA_



not modelled 9.8 18
PDB header:structural genomics
Chain: A: PDB Molecule:cv0863;
PDBTitle: solution nmr structure of uncharacterized protein cv0863 from2 chromobacterium violaceum. northeast structural genomics target3 (nesg) target cvt3. ocsp target cv0863.
69c4wt5A_



not modelled 9.6 17
PDB header:chaperone
Chain: A: PDB Molecule:rubisco accumulation factor 1, isoform 2;
PDBTitle: the c-terminal domain of rubisco accumulation factor 1 from2 arabidopsis thaliana, crystal form ii
70c2k78A_



not modelled 9.5 16
PDB header:heme-binding protein
Chain: A: PDB Molecule:iron-regulated surface determinant protein c;
PDBTitle: solution structure of the isdc neat domain bound to zinc2 protoporphyrin
71c3rurB_



not modelled 9.2 13
PDB header:metal transport
Chain: B: PDB Molecule:iron-regulated surface determinant protein b;
PDBTitle: staphylococcus aureus heme-bound selenomethionine-labeled isdb-n2
72d1ftaa_



not modelled 8.5 13
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
73d2itea1



not modelled 8.4 4
Fold:Immunoglobulin-like beta-sandwich
Superfamily:NEAT domain-like
Family:NEAT domain
74c3ke2A_



not modelled 8.4 15
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_928783.1;
PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution
75c3idwA_



not modelled 8.3 30
PDB header:endocytosis
Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1;
PDBTitle: crystal structure of sla1 homology domain 2
76c5e6fA_



not modelled 8.0 25
PDB header:viral protein
Chain: A: PDB Molecule:cnpv261 holliday junction resolvase protein;
PDBTitle: canarypox virus resolvase
77c3fgeA_



not modelled 7.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative flavin reductase with split barrel domain;
PDBTitle: crystal structure of putative flavin reductase with split barrel2 domain (yp_750721.1) from shewanella frigidimarina ncimb 400 at 1.743 a resolution
78c3l48B_



not modelled 6.4 12
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
79c4makA_



not modelled 5.8 44
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endoribonuclease cas2;
PDBTitle: crystal structure of a putative ssrna endonuclease cas2, crispr2 adaptation protein from e.coli
80d1vhea1



not modelled 5.7 22
Fold:Domain of alpha and beta subunits of F1 ATP synthase-like
Superfamily:Aminopeptidase/glucanase lid domain
Family:Aminopeptidase/glucanase lid domain
81d1ewfa1



not modelled 5.6 19
Fold:Aha1/BPI domain-like
Superfamily:Bactericidal permeability-increasing protein, BPI
Family:Bactericidal permeability-increasing protein, BPI
82c3zfnA_



not modelled 5.5 29
PDB header:hydrolase
Chain: A: PDB Molecule:n-terminal protease npro;
PDBTitle: crystal structure of product-like, processed n-terminal protease npro

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