Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1601_(hisB)_1802042_1802674
DateFri Aug 2 13:30:19 BST 2019
Unique Job ID3e458a9d819032d3
SequenceMTTTQTAKAS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.072 Y:45.458 Z:47.705
Model (left) based on template c6fwhH_
Top template information
PDB header:lyase
Chain: H: PDB Molecule:imidazoleglycerol-phosphate dehydratase;
PDBTitle: acanthamoeba igpd in complex with r-c348 to 1.7a resolution
Confidence and coverage
Confidence:100.0% Coverage: 92%
193 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6fwhH_



100.0 47
PDB header:lyase
Chain: H: PDB Molecule:imidazoleglycerol-phosphate dehydratase;
PDBTitle: acanthamoeba igpd in complex with r-c348 to 1.7a resolution
2c6ezmL_



100.0 44
PDB header:lyase
Chain: L: PDB Molecule:imidazoleglycerol-phosphate dehydratase;
PDBTitle: imidazoleglycerol-phosphate dehydratase from saccharomyces cerevisiae
3c4lomA_



100.0 100
PDB header:lyase
Chain: A: PDB Molecule:imidazoleglycerol-phosphate dehydratase;
PDBTitle: crystal structure of mycobacterium tuberculosis hisb in complex with2 its substrate
4c2f1dP_



100.0 51
PDB header:lyase
Chain: P: PDB Molecule:imidazoleglycerol-phosphate dehydratase 1;
PDBTitle: x-ray structure of imidazoleglycerol-phosphate dehydratase
5c5dnlA_



100.0 38
PDB header:lyase
Chain: A: PDB Molecule:imidazoleglycerol-phosphate dehydratase;
PDBTitle: crystal structure of igpd from pyrococcus furiosus in complex with2 (s)-c348
6c1rhyB_



100.0 39
PDB header:lyase
Chain: B: PDB Molecule:imidazole glycerol phosphate dehydratase;
PDBTitle: crystal structure of imidazole glycerol phosphate dehydratase
7c2ae8C_



100.0 33
PDB header:lyase
Chain: C: PDB Molecule:imidazoleglycerol-phosphate dehydratase;
PDBTitle: crystal structure of imidazoleglycerol-phosphate dehydratase from2 staphylococcus aureus subsp. aureus n315
8d2f1da2



100.0 51
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
9d1rhya2



100.0 35
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
10d2ae8a2



100.0 36
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
11d2f1da1



100.0 51
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
12d1rhya1



100.0 43
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
13d2ae8a1



100.0 30
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
14d2ja9a2



78.0 15
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
15c2ja9A_



65.4 14
PDB header:rna-binding protein
Chain: A: PDB Molecule:exosome complex exonuclease rrp40;
PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40
16c4ifdG_



55.0 14
PDB header:hydrolase/rna
Chain: G: PDB Molecule:exosome complex component rrp40;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
17d2nn6g3



42.0 15
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
18c3j6vE_



36.0 18
PDB header:ribosome
Chain: E: PDB Molecule:28s ribosomal protein s5, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
19c2k8hA_



34.8 6
PDB header:signaling protein
Chain: A: PDB Molecule:small ubiquitin protein;
PDBTitle: solution structure of sumo from trypanosoma brucei
20c4ywjB_



32.1 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: crystal structure of 4-hydroxy-tetrahydrodipicolinate reductase (htpa2 reductase) from pseudomonas aeruginosa
21c2ba0A_



not modelled 29.5 13
PDB header:rna binding protein
Chain: A: PDB Molecule:archaeal exosome rna binding protein rrp4;
PDBTitle: archaeal exosome core
22c5us6L_



not modelled 28.3 31
PDB header:oxidoreductase
Chain: L: PDB Molecule:4-hydroxy-tetrahydrodipicolinate reductase;
PDBTitle: structure of dihydrodipicolinate reductase from vibrio vulnificus2 bound to nadh and 2,6 pyridine dicarboxylic acid with intact3 polyhistidine tag
23c3nqwB_



not modelled 27.6 24
PDB header:hydrolase
Chain: B: PDB Molecule:cg11900;
PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses
24d1itza2



not modelled 24.4 23
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like Pyr module
25c2nn6G_



not modelled 24.0 15
PDB header:hydrolase/transferase
Chain: G: PDB Molecule:exosome complex exonuclease rrp40;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
26c2k4mA_



not modelled 23.6 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0146 protein mth_1000;
PDBTitle: solution nmr structure of m. thermoautotrophicum protein mth_1000,2 northeast structural genomics consortium target tr8
27c5knnG_



not modelled 20.3 18
PDB header:ligase
Chain: G: PDB Molecule:alanine--trna ligase, cytoplasmic;
PDBTitle: evolutionary gain of alanine mischarging to non-cognate trnas with a2 g4:u69 base pair
28c3d6kB_



not modelled 20.1 17
PDB header:transferase
Chain: B: PDB Molecule:putative aminotransferase;
PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae
29d1c55a_



not modelled 19.3 40
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
30d2ed6a1



not modelled 18.9 17
Fold:WSSV envelope protein-like
Superfamily:WSSV envelope protein-like
Family:WSSV envelope protein-like
31d2oc5a1



not modelled 18.1 25
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:PMT1231-like
32d1sr9a3



not modelled 17.7 18
Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
33c2dnrA_



not modelled 16.9 9
PDB header:rna binding protein
Chain: A: PDB Molecule:synaptojanin-1;
PDBTitle: solution structure of rna binding domain in synaptojanin 1
34c2becB_



not modelled 15.3 56
PDB header:metal binding protein/transport protein
Chain: B: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: crystal structure of chp2 in complex with its binding2 region in nhe1 and insights into the mechanism of ph3 regulation
35c5o5jI_



not modelled 14.9 18
PDB header:ribosome
Chain: I: PDB Molecule:30s ribosomal protein s9;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
36c3nr1A_



not modelled 14.9 28
PDB header:hydrolase
Chain: A: PDB Molecule:hd domain-containing protein 3;
PDBTitle: a metazoan ortholog of spot hydrolyzes ppgpp and plays a role in2 starvation responses
37d1vj7a1



not modelled 14.1 28
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:HD domain
38c4a8jA_



not modelled 13.7 35
PDB header:transcription
Chain: A: PDB Molecule:elongator complex protein 4;
PDBTitle: crystal structure of the elongator subcomplex elp456
39c4joiA_



not modelled 12.7 30
PDB header:dna binding protein
Chain: A: PDB Molecule:cst complex subunit stn1;
PDBTitle: crystal structure of the human telomeric stn1-ten1 complex
40c1drwA_



not modelled 12.6 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: escherichia coli dhpr/nhdh complex
41c4xeoB_



not modelled 11.4 18
PDB header:ligase
Chain: B: PDB Molecule:alanine--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human alars catalytic domain with r329h mutation
42d2caza1



not modelled 11.4 22
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS23 C-terminal domain
43c2cazD_



not modelled 10.5 22
PDB header:protein transport
Chain: D: PDB Molecule:suppressor protein stp22 of temperature-sensitive alpha-
PDBTitle: escrt-i core
44d2csba2



not modelled 10.4 33
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
45d2r4qa1



not modelled 10.4 16
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
46c3ne9B_



not modelled 10.3 16
PDB header:transferase
Chain: B: PDB Molecule:phosphopantetheine protein transferase, ppt1p;
PDBTitle: chronobacterium ammoiniagenes apo-acps strucutre
47d2r48a1



not modelled 10.3 19
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:PTS system IIB component-like
Family:PTS system, Fructose specific IIB subunit-like
48c2kyrA_



not modelled 10.3 22
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
49c2vxoB_



not modelled 10.2 20
PDB header:ligase
Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing];
PDBTitle: human gmp synthetase in complex with xmp
50c2nq5A_



not modelled 10.1 15
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of methyltransferase from streptococcus mutans
51c2l36A_



not modelled 9.4 58
PDB header:antimicrobial protein
Chain: A: PDB Molecule:msi594;
PDBTitle: solution structure of msi-594 derived mutant peptide msi594f5a in2 lipopolysaccharide micelles
52d1szpa2



not modelled 9.3 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
53d1diha2



not modelled 9.2 34
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
54c1itzC_



not modelled 9.0 25
PDB header:transferase
Chain: C: PDB Molecule:transketolase;
PDBTitle: maize transketolase in complex with tpp
55c5dleD_



not modelled 9.0 19
PDB header:transferase
Chain: D: PDB Molecule:pts system, fructose-specific iiabc component;
PDBTitle: crystal structure from a domain (thr161-f265) from fructose-specific2 iiabc component (pts system) from borrelia burgdorferi
56d1g99a1



not modelled 8.9 41
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
57c4chhB_



not modelled 8.7 13
PDB header:chaperone
Chain: B: PDB Molecule:protein interacting with hsp90 1;
PDBTitle: n-terminal domain of yeast pih1p
58c2m1zA_



not modelled 8.7 22
PDB header:transferase
Chain: A: PDB Molecule:lmo0427 protein;
PDBTitle: solution structure of uncharacterized protein lmo0427
59d2r8oa1



not modelled 8.6 17
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like Pyr module
60c5j43F_



not modelled 8.4 20
PDB header:toxin
Chain: F: PDB Molecule:trna nuclease cdia;
PDBTitle: cdia-ct from uropathogenic escherichia coli in complex with cysk
61d1yl7a2



not modelled 8.3 19
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
62c4quwA_



not modelled 8.1 30
PDB header:lyase
Chain: A: PDB Molecule:aldehyde decarbonylase;
PDBTitle: crystal structure of the apo form of cyanobacterial aldehyde-2 deformylating oxygenase
63c1s1hE_



not modelled 8.0 16
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein s2;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
64c4g5sZ_



not modelled 7.9 33
PDB header:cell cycle/signaling protein
Chain: Z: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl3/galphai3 complex
65c1y88A_



not modelled 7.9 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af1548;
PDBTitle: crystal structure of protein of unknown function af1548
66c4ztxA_



not modelled 7.8 18
PDB header:transferase
Chain: A: PDB Molecule:cobalamin-independent methionine synthase;
PDBTitle: neurospora crassa cobalamin-independent methionine synthase complexed2 with zn2+
67c3l7sA_



not modelled 7.7 17
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of mete coordinated with zinc from streptococcus2 mutans
68d1xp8a1



not modelled 7.6 38
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
69c1vj7B_



not modelled 7.5 29
PDB header:hydrolase, transferase
Chain: B: PDB Molecule:bifunctional rela/spot;
PDBTitle: crystal structure of the bifunctional catalytic fragment of relseq,2 the rela/spot homolog from streptococcus equisimilis.
70c3tvsA_



not modelled 7.5 26
PDB header:signaling protein
Chain: A: PDB Molecule:cryptochrome-1;
PDBTitle: structure of full-length drosophila cryptochrome
71d2e1za1



not modelled 7.5 29
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
72c3so6A_



not modelled 7.4 7
PDB header:protein binding/protein transport
Chain: A: PDB Molecule:ldl receptor adaptor protein;
PDBTitle: crystal structure of the ldl receptor tail in complex with autosomal2 recessive hypercholesterolemia ptb domain
73d2uube1



not modelled 7.4 21
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
74d1y88a2



not modelled 7.4 25
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:MRR-like
75c2qzbB_



not modelled 7.4 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yfey;
PDBTitle: crystal structure of the uncharacterized protein yfey from escherichia2 coli
76d1u69a_



not modelled 7.3 8
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:3-demethylubiquinone-9 3-methyltransferase
77d2f6ma1



not modelled 7.3 26
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS23 C-terminal domain
78c4jxdA_



not modelled 7.2 19
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 3;
PDBTitle: crystal structure of predicted fructose specific iib from escherichia2 coli
79c3bs4A_



not modelled 7.2 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ph0321;
PDBTitle: crystal structure of uncharacterized protein ph0321 from pyrococcus2 horikoshii in complex with an unknown peptide
80c4psiA_



not modelled 6.8 17
PDB header:protein binding
Chain: A: PDB Molecule:pih1 domain-containing protein 1;
PDBTitle: pih1d1/phospho-tel2 complex
81c3dc1A_



not modelled 6.6 7
PDB header:transferase
Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase
PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
82d1ftha_



not modelled 6.6 50
Fold:4'-phosphopantetheinyl transferase
Superfamily:4'-phosphopantetheinyl transferase
Family:Holo-(acyl carrier protein) synthase ACPS
83c3gzaB_



not modelled 6.5 11
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution
84c5xumA_



not modelled 6.5 28
PDB header:transferase
Chain: A: PDB Molecule:holo-[acyl-carrier-protein] synthase;
PDBTitle: crystal structure of thermotoga maritima holo-[acyl-carrier-protein]2 synthase (acps)
85c2lb0A_



not modelled 6.4 15
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide
86c2lazA_



not modelled 6.4 15
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide
87c2auhB_



not modelled 6.4 40
PDB header:transferase/signaling protein
Chain: B: PDB Molecule:growth factor receptor-bound protein 14;
PDBTitle: crystal structure of the grb14 bps region in complex with2 the insulin receptor tyrosine kinase
88c2e30B_



not modelled 6.3 56
PDB header:metal binding protein/transport protein
Chain: B: PDB Molecule:sodium/hydrogen exchanger 1;
PDBTitle: solution structure of the cytoplasmic region of na+/h+2 exchanger 1 complexed with essential cofactor calcineurin3 b homologous protein 1
89d1n0wa_



not modelled 6.2 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
90c3k2tA_



not modelled 6.2 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo2511 protein;
PDBTitle: crystal structure of lmo2511 protein from listeria2 monocytogenes, northeast structural genomics consortium3 target lkr84a
91c1yfsB_



not modelled 6.2 20
PDB header:ligase
Chain: B: PDB Molecule:alanyl-trna synthetase;
PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine
92d1v5wa_



not modelled 6.1 24
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
93c2x1cA_



not modelled 5.9 24
PDB header:transferase
Chain: A: PDB Molecule:acyl-coenzyme
PDBTitle: the crystal structure of precursor acyl coenzyme2 a:isopenicillin n acyltransferase from penicillium3 chrysogenum
94d1r9ja1



not modelled 5.9 20
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like Pyr module
95c1r9jB_



not modelled 5.9 21
PDB header:transferase
Chain: B: PDB Molecule:transketolase;
PDBTitle: transketolase from leishmania mexicana
96c3io5B_



not modelled 5.9 31
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination and repair protein;
PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4
97c4p63A_



not modelled 5.8 30
PDB header:transferase
Chain: A: PDB Molecule:probable deoxyhypusine synthase;
PDBTitle: crystal structure of deoxyhypusine synthase from pyrococcus horikoshii
98c3bbnI_



not modelled 5.8 15
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein s9;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
99c4ht4A_



not modelled 5.8 8
PDB header:hydrolase/dna
Chain: A: PDB Molecule:nicking enzyme;
PDBTitle: molecular basis of vancomycin resistance transfer in staphylococcus2 aureus

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