Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1606_(hisI)_1805660_1806007
DateFri Aug 2 13:30:19 BST 2019
Unique Job ID51541a436d9eec24
SequenceMTLDPKIAAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.979 Y:33.773 Z:49.368
Model (left) based on template d1zpsa1
Top template information
Fold:HisI-like
Superfamily:HisI-like
Family:HisI-like
Confidence and coverage
Confidence:100.0% Coverage: 90%
104 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1zpsa1



100.0 53
Fold:HisI-like
Superfamily:HisI-like
Family:HisI-like
2d1m4ka2



59.4 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
3d1ulva4



58.9 19
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
4d1nkra2



55.6 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
5d1lf6a2



50.9 8
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
6c5lp4A_



37.8 18
PDB header:hydrolase/antibiotic
Chain: A: PDB Molecule:penicillin-binding protein 2 (pbp2);
PDBTitle: penicillin-binding protein (pbp2) from helicobacter pylori
7c4avrA_



31.1 24
PDB header:unknown function
Chain: A: PDB Molecule:pa4485;
PDBTitle: crystal structure of the hypothetical protein pa4485 from2 pseudomonas aeruginosa
8d1j3ea_



30.8 16
Fold:Replication modulator SeqA, C-terminal DNA-binding domain
Superfamily:Replication modulator SeqA, C-terminal DNA-binding domain
Family:Replication modulator SeqA, C-terminal DNA-binding domain
9c4mnrA_



29.5 33
PDB header:transferase
Chain: A: PDB Molecule:peptidoglycan glycosyltransferase;
PDBTitle: crystal structure of d,d-transpeptidase domain of peptidoglycan2 glycosyltransferase from eggerthella lenta
10c1qmfA_



28.8 17
PDB header:cell cycle
Chain: A: PDB Molecule:penicillin-binding protein 2x;
PDBTitle: penicillin-binding protein 2x (pbp-2x) acyl-enzyme complex
11d1pyya4



28.6 18
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
12c4ovdA_



25.6 14
PDB header:transferase
Chain: A: PDB Molecule:peptidoglycan glycosyltransferase;
PDBTitle: crystal structure of a putative peptidoglycan glycosyltransferase from2 atopobium parvulum dsm 20469
13d2afja1



24.3 16
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:SPRY domain
14c3equB_



22.4 23
PDB header:biosynthetic protein
Chain: B: PDB Molecule:penicillin-binding protein 2;
PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae
15c4eskA_



21.8 20
PDB header:immune system
Chain: A: PDB Molecule:leukocyte-associated immunoglobulin-like receptor 1;
PDBTitle: crystal structure of a strand-swapped dimer of mouse leukocyte-2 associated immunoglobulin-like receptor 1 (nysgrc-006047)ig-like3 domain
16d2fnja1



19.7 18
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:SPRY domain
17d1k25a4



19.7 24
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
18c6bsrA_



19.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:pbp4 protein;
PDBTitle: crystal structure of penicillin-binding protein 4 (pbp4) from2 enterococcus faecalis in the benzylpenicillin bound form.
19c4jbfB_



18.8 23
PDB header:transferase
Chain: B: PDB Molecule:peptidoglycan glycosyltransferase;
PDBTitle: crystal structure of peptidoglycan glycosyltransferase from atopobium2 parvulum dsm 20469.
20c5crfA_



16.9 24
PDB header:penicillin-binding protein
Chain: A: PDB Molecule:penicillin-binding protein 1a;
PDBTitle: structure of the penicillin-binding protein pona1 from mycobacterium2 tuberculosis
21c5uy7A_



not modelled 16.9 31
PDB header:transferase
Chain: A: PDB Molecule:peptidoglycan glycosyltransferase;
PDBTitle: crystal structure of a peptidoglycan glycosyltransferase from2 burkholderia ambifaria
22c1mwuA_



not modelled 16.9 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:penicillin-binding protein 2a;
PDBTitle: structure of methicillin acyl-penicillin binding protein 2a from2 methicillin resistant staphylococcus aureus strain 27r at 2.60 a3 resolution.
23d2od6a1



not modelled 16.9 40
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Marine metagenome family DABB1
24d1m4ka1



not modelled 15.8 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
25c6g9fA_



not modelled 15.5 29
PDB header:hydrolase/antibiotic
Chain: A: PDB Molecule:peptidoglycan d,d-transpeptidase mrda;
PDBTitle: structural basis for the inhibition of e. coli pbp2
26d1nkra1



not modelled 13.8 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
27c5dvyA_



not modelled 13.4 23
PDB header:penicillin-binding protein
Chain: A: PDB Molecule:penicillin binding protein 2 prime;
PDBTitle: 2.95 angstrom crystal structure of the dimeric form of penicillin2 binding protein 2 prime from enterococcus faecium
28d2ahme1



not modelled 13.0 25
Fold:Coronavirus NSP8-like
Superfamily:Coronavirus NSP8-like
Family:Coronavirus NSP8-like
29c3lo7A_



not modelled 12.3 25
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding protein a;
PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis
30d2dl2a1



not modelled 12.2 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
31c3ue3A_



not modelled 12.0 25
PDB header:transferase
Chain: A: PDB Molecule:septum formation, penicillin binding protein 3,
PDBTitle: crystal structure of acinetobacter baumanni pbp3
32c3loeA_



not modelled 11.7 29
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (f28a mutant)
33d2cqaa1



not modelled 11.5 11
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:TIP49 domain
34c2olvA_



not modelled 11.4 18
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding protein 2;
PDBTitle: structural insight into the transglycosylation step of bacterial cell2 wall biosynthesis : donor ligand complex
35c3gnyA_



not modelled 11.4 29
PDB header:antimicrobial protein
Chain: A: PDB Molecule:neutrophil defensin 1;
PDBTitle: crystal structure of human alpha-defensin 1 (hnp1)
36d1axib1



not modelled 11.2 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
37d1ex4a1



not modelled 10.7 42
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
38d2f09a1



not modelled 10.4 14
Fold:Streptavidin-like
Superfamily:YdhA-like
Family:YdhA-like
39c1ug9A_



not modelled 10.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
40c5gmkJ_



not modelled 10.2 71
PDB header:rna binding protein/rna
Chain: J: PDB Molecule:pre-mrna-splicing factor cwc21;
PDBTitle: cryo-em structure of the catalytic step i spliceosome (c complex) at2 3.4 angstrom resolution
41c3hj2B_



not modelled 10.1 29
PDB header:antimicrobial protein
Chain: B: PDB Molecule:human neutrophil peptide 1;
PDBTitle: crystal structure of covalent dimer of hnp1
42c2ahmG_



not modelled 9.9 25
PDB header:viral protein, replication
Chain: G: PDB Molecule:replicase polyprotein 1ab, heavy chain;
PDBTitle: crystal structure of sars-cov super complex of non-structural2 proteins: the hexadecamer
43c5u47A_



not modelled 9.7 17
PDB header:lipid-binding protein
Chain: A: PDB Molecule:penicillin binding protein 2x;
PDBTitle: 1.95 angstrom resolution crystal structure of penicillin binding2 protein 2x from streptococcus thermophilus
44c3ub0D_



not modelled 9.7 23
PDB header:replication
Chain: D: PDB Molecule:non-structural protein 6, nsp6,;
PDBTitle: crystal structure of the nonstructural protein 7 and 8 complex of2 feline coronavirus
45d1pjua2



not modelled 9.6 28
Fold:Plant proteinase inhibitors
Superfamily:Plant proteinase inhibitors
Family:Plant proteinase inhibitors
46c2jtdA_



not modelled 9.4 5
PDB header:cell adhesion
Chain: A: PDB Molecule:myomesin-1;
PDBTitle: skelemin immunoglobulin c2 like domain 4
47c5ewoA_



not modelled 9.3 22
PDB header:viral protein
Chain: A: PDB Molecule:structural protein;
PDBTitle: crystal structure of the human astrovirus 1 capsid protein spike2 domain at 0.95-a resolution
48c6ni0A_



not modelled 9.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:beta-lactamase;
PDBTitle: crystal structure of the beta lactamase class d ybxi from burkholderia2 thailandensis
49c3pbnA_



not modelled 9.0 17
PDB header:hydrolase/antibiotic
Chain: A: PDB Molecule:penicillin-binding protein 3;
PDBTitle: crystal structure of apo pbp3 from pseudomonas aeruginosa
50d1ugna2



not modelled 8.7 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
51c3dwkC_



not modelled 8.6 18
PDB header:transferase
Chain: C: PDB Molecule:penicillin-binding protein 2;
PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer
52c4bjpA_



not modelled 8.6 21
PDB header:transferase
Chain: A: PDB Molecule:penicillin binding protein transpeptidase domain protein;
PDBTitle: crystal structure of e. coli penicillin binding protein 3
53d2jnwa1



not modelled 8.6 45
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:XPF/Rad1/Mus81 nuclease
54c3lo7B_



not modelled 8.4 25
PDB header:transferase
Chain: B: PDB Molecule:penicillin-binding protein a;
PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis
55d1vqqa3



not modelled 8.4 13
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
56d1rp5a4



not modelled 8.2 24
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
57d2a1ia1



not modelled 8.2 45
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:XPF/Rad1/Mus81 nuclease
58d2c5wb1



not modelled 8.2 18
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
59c5iznH_



not modelled 8.2 19
PDB header:ribosomal protein
Chain: H: PDB Molecule:50s ribosomal protein l25;
PDBTitle: the crystal structure of 50s ribosomal protein l25 from vibrio2 vulnificus cmcp6
60d1wjka_



not modelled 8.1 22
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
61d2z3qa1



not modelled 8.0 27
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
62c3zg8B_



not modelled 7.7 29
PDB header:penicillin-binding protein
Chain: B: PDB Molecule:penicillin-binding protein 4;
PDBTitle: crystal structure of penicillin binding protein 4 from2 listeria monocytogenes in the ampicillin bound form
63d1y0ga_



not modelled 7.7 18
Fold:Streptavidin-like
Superfamily:YceI-like
Family:YceI-like
64c4ye5A_



not modelled 7.6 53
PDB header:penicillin binding protein
Chain: A: PDB Molecule:peptidoglycan synthetase penicillin-binding protein 3;
PDBTitle: the crystal structure of a peptidoglycan synthetase from2 bifidobacterium adolescentis atcc 15703
65d1v0aa1



not modelled 7.3 8
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:CBM11
66d2olua2



not modelled 7.3 12
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
67d1ucta2



not modelled 7.2 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
68d3b5ha2



not modelled 7.1 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
69d1k38a_



not modelled 7.1 30
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
70c3vslB_



not modelled 7.1 41
PDB header:penicillin-binding protein
Chain: B: PDB Molecule:penicillin-binding protein 3;
PDBTitle: crystal structure of penicillin-binding protein 3 (pbp3) from2 methicilin-resistant staphylococcus aureus in the cefotaxime bound3 form.
71c1ux6A_



not modelled 7.0 29
PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-1;
PDBTitle: structure of a thrombospondin c-terminal fragment reveals a novel2 calcium core in the type 3 repeats
72c4ht4A_



not modelled 7.0 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:nicking enzyme;
PDBTitle: molecular basis of vancomycin resistance transfer in staphylococcus2 aureus
73d1ux6a1



not modelled 6.7 29
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Thrombospondin C-terminal domain
74c3sk7B_



not modelled 6.6 10
PDB header:replication inhibitor
Chain: B: PDB Molecule:protein seqa;
PDBTitle: crystal structure of v. cholerae seqa
75c3hpeB_



not modelled 6.6 17
PDB header:transport protein
Chain: B: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: crystal structure of ycei (hp1286) from helicobacter pylori
76d1tocr1



not modelled 6.6 32
Fold:BPTI-like
Superfamily:BPTI-like
Family:Soft tick anticoagulant proteins
77c3ukwC_



not modelled 6.5 43
PDB header:protein transport/inhibitor
Chain: C: PDB Molecule:bimax1 peptide;
PDBTitle: mouse importin alpha: bimax1 peptide complex
78c5kouB_



not modelled 6.5 11
PDB header:viral protein
Chain: B: PDB Molecule:capsid polyprotein vp25;
PDBTitle: crystal structure of the human astrovirus 2 capsid protein spike2 domain at 1.87-a resolution
79d2dlxa1



not modelled 6.4 6
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:UAS domain
80c5lj3R_



not modelled 6.4 71
PDB header:splicing
Chain: R: PDB Molecule:pre-mrna-splicing factor cwc21;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
81d1jlxa1



not modelled 6.3 16
Fold:beta-Trefoil
Superfamily:Agglutinin
Family:Agglutinin
82c3oc2A_



not modelled 6.3 15
PDB header:penicillin-binding protein
Chain: A: PDB Molecule:penicillin-binding protein 3;
PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa
83c1yo8A_



not modelled 6.3 29
PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin-2;
PDBTitle: structure of the c-terminal domain of human thrombospondin-2
84c2wadB_



not modelled 6.2 35
PDB header:peptide binding protein
Chain: B: PDB Molecule:penicillin-binding protein 2b;
PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204)
85c1jlxB_



not modelled 6.1 11
PDB header:lectin
Chain: B: PDB Molecule:agglutinin;
PDBTitle: agglutinin in complex with t-disaccharide
86c5ounA_



not modelled 5.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:ruvb-like protein 2;
PDBTitle: nmr solution structure of the external dii domain of rvb2 from2 saccharomyces cerevisiae
87c3fmtF_



not modelled 5.9 13
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
88d1ihwa_



not modelled 5.9 42
Fold:SH3-like barrel
Superfamily:DNA-binding domain of retroviral integrase
Family:DNA-binding domain of retroviral integrase
89c3fbyC_



not modelled 5.8 21
PDB header:cell adhesion
Chain: C: PDB Molecule:cartilage oligomeric matrix protein;
PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein.
90d2dypd2



not modelled 5.8 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
91c2mt7A_



not modelled 5.7 40
PDB header:toxin
Chain: A: PDB Molecule:hs1a;
PDBTitle: solution structure of spider-venom peptide hs1a
92c6bk8K_



not modelled 5.5 71
PDB header:rna binding protein
Chain: K: PDB Molecule:pre-mrna-splicing factor cwc21;
PDBTitle: s. cerevisiae spliceosomal post-catalytic p complex
93c1pmdA_



not modelled 5.4 20
PDB header:peptidoglycan synthesis
Chain: A: PDB Molecule:peptidoglycan synthesis multifunctional enzyme;
PDBTitle: penicillin-binding protein 2x (pbp-2x)
94c2z56B_



not modelled 5.3 36
PDB header:hydrolase
Chain: B: PDB Molecule:tk-subtilisin;
PDBTitle: crystal structure of g56s-propeptide:s324a-subtilisin complex
95c2bcxB_



not modelled 5.3 33
PDB header:calcium binding protein
Chain: B: PDB Molecule:ryanodine receptor 1;
PDBTitle: crystal structure of calmodulin in complex with a ryanodine receptor2 peptide
96d1dfup_



not modelled 5.3 6
Fold:Ribosomal protein L25-like
Superfamily:Ribosomal protein L25-like
Family:Ribosomal protein L25-like
97c5ov3B_



not modelled 5.2 14
PDB header:structural protein
Chain: B: PDB Molecule:retinoblastoma-binding protein 5;
PDBTitle: structure of the rbbp5 beta-propeller domain
98c4fqjA_



not modelled 5.2 33
PDB header:viral protein/immune system
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: influenza b/florida/4/2006 hemagglutinin fab cr8071 complex
99c6bduA_



not modelled 5.1 44
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein ppra;
PDBTitle: crystal structure of ppra from deinococcus radiodurans

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