Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1607_(chaA)_1806188_1807270
DateFri Aug 2 13:30:20 BST 2019
Unique Job IDcf50b412117b7921
SequenceMLKRVPWTVV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.586 Y:53.358 Z:50.463
Model (left) based on template c4k1cB_
Top template information
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
Confidence and coverage
Confidence:100.0% Coverage: 97%
350 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4k1cB_



100.0 18
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
2c4k1cA_



100.0 18
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
3c4kjsB_



100.0 19
PDB header:transport protein
Chain: B: PDB Molecule:cation exchanger yfke;
PDBTitle: structure of native yfke
4c4kppA_



100.0 17
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
5c3v5uA_



100.0 19
PDB header:metal transport
Chain: A: PDB Molecule:uncharacterized membrane protein mj0091;
PDBTitle: structure of sodium/calcium exchanger from methanocaldococcus2 jannaschii dsm 2661
6c4djiA_



84.6 10
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
7c4r0cB_



51.7 14
PDB header:membrane protein
Chain: B: PDB Molecule:abgt putative transporter family;
PDBTitle: crystal structure of the alcanivorax borkumensis ydah transporter2 reveals an unusual topology
8c3j1zP_



50.1 13
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
9c4iu8A_



46.8 13
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
10d1xrda1



44.2 21
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
11c1xrdA_



44.2 21
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
12c4iu9A_



43.5 13
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
13c6et5b_



33.5 14
PDB header:photosynthesis
Chain: B: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
14c6hwhX_



30.5 12
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
15c4y7jE_



27.0 11
PDB header:membrane protein,transport protein
Chain: E: PDB Molecule:large conductance mechanosensitive channel protein,
PDBTitle: structure of an archaeal mechanosensitive channel in expanded state
16c3qnqD_



24.3 13
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
17c2yvxD_



22.0 15
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
18c4r1iB_



17.2 13
PDB header:membrane protein
Chain: B: PDB Molecule:aminobenzoyl-glutamate transporter;
PDBTitle: structure and function of neisseria gonorrhoeae mtrf illuminates a2 class of antimetabolite efflux pumps
19d2yvxa3



16.3 15
Fold:MgtE membrane domain-like
Superfamily:MgtE membrane domain-like
Family:MgtE membrane domain-like
20c2oarA_



15.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)
21d2oara1



not modelled 14.4 19
Fold:Gated mechanosensitive channel
Superfamily:Gated mechanosensitive channel
Family:Gated mechanosensitive channel
22c5mg3D_



not modelled 13.5 15
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
23c3jd8A_



not modelled 13.2 14
PDB header:membrane protein
Chain: A: PDB Molecule:niemann-pick c1 protein;
PDBTitle: cryo-em structure of the full-length human npc1 at 4.4 angstrom
24c6j5i8_



not modelled 11.6 11
PDB header:membrane protein
Chain: 8: PDB Molecule:atp synthase protein 8;
PDBTitle: cryo-em structure of the mammalian dp-state atp synthase
25c5xpdA_



not modelled 11.3 7
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
26c4bduC_



not modelled 8.7 21
PDB header:apoptosis
Chain: C: PDB Molecule:green fluorescent protein, apoptosis regulator bax;
PDBTitle: bax bh3-in-groove dimer (gfp)
27c6ob7A_



not modelled 8.5 9
PDB header:transport protein
Chain: A: PDB Molecule:equilibrative nucleoside transporter 1;
PDBTitle: human equilibrative nucleoside transporter-1, dilazep bound
28d2iuba2



not modelled 8.3 10
Fold:Transmembrane helix hairpin
Superfamily:Magnesium transport protein CorA, transmembrane region
Family:Magnesium transport protein CorA, transmembrane region
29c6j5j8_



not modelled 7.7 11
PDB header:membrane protein
Chain: 8: PDB Molecule:atp synthase protein 8;
PDBTitle: cryo-em structure of the mammalian e-state atp synthase
30c6igz9_



not modelled 7.1 25
PDB header:plant protein
Chain: 9: PDB Molecule:lhca-i;
PDBTitle: structure of psi-lhci
31d1twfc2



not modelled 6.0 50
Fold:Insert subdomain of RNA polymerase alpha subunit
Superfamily:Insert subdomain of RNA polymerase alpha subunit
Family:Insert subdomain of RNA polymerase alpha subunit
32d1sqga1



not modelled 5.9 17
Fold:NusB-like
Superfamily:NusB-like
Family:RmsB N-terminal domain-like
33d2nqwa1



not modelled 5.6 21
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
34c4he8M_



not modelled 5.2 12
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit 13;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 thermus thermophilus

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below