Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1614_(lgt)_1813178_1814584
DateFri Aug 2 13:30:20 BST 2019
Unique Job ID437c426af8e6264f
SequenceMRMLPSYIPS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.403 Y:50.363 Z:65.461
Model (left) based on template c5azcA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:prolipoprotein diacylglyceryl transferase;
PDBTitle: crystal structure of escherichia coli lgt in complex with2 phosphatidylglycerol
Confidence and coverage
Confidence:100.0% Coverage: 58%
271 residues ( 58% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5azcA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:prolipoprotein diacylglyceryl transferase;
PDBTitle: crystal structure of escherichia coli lgt in complex with2 phosphatidylglycerol
2c6m97A_



81.4 11
PDB header:transport protein
Chain: A: PDB Molecule:chimera protein of high affinity copper uptake protein 1
PDBTitle: crystal structure of the high-affinity copper transporter ctr1
3c4kppA_



80.1 10
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
4c5voxb_



62.8 11
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase in complex with legionella pneumophila effector sidk2 (rotational state 1)
5c6dlnB_



62.4 20
PDB header:membrane protein
Chain: B: PDB Molecule:transmembrane protein gp41;
PDBTitle: oligomeric structure of the hiv gp41 mper-tmd in phospholipid bilayers
6c6o7xa_



60.7 15
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
7c6qkcJ_



58.1 17
PDB header:membrane protein
Chain: J: PDB Molecule:voltage-dependent calcium channel gamma-8 subunit;
PDBTitle: glua1/2 in complex with auxiliary subunit gamma-8
8c6cciA_



55.6 22
PDB header:transferase
Chain: A: PDB Molecule:protein eskimo 1;
PDBTitle: the crystal structure of xoat1
9c1m57H_



50.9 20
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant))
10c5iwsA_



48.5 19
PDB header:transferase
Chain: A: PDB Molecule:protein-n(pi)-phosphohistidine-sugar phosphotransferase
PDBTitle: crystal structure of the transporter malt, the eiic domain from the2 maltose-specific phosphotransferase system
11c5kzoA_



47.4 20
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
12c3m7eA_



46.4 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein teha homolog;
PDBTitle: crystal structure of plant slac1 homolog teha
13c3m7bA_



46.4 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein teha homolog;
PDBTitle: crystal structure of plant slac1 homolog teha
14c5a1sB_



44.4 15
PDB header:transport protein
Chain: B: PDB Molecule:citrate-sodium symporter;
PDBTitle: crystal structure of the sodium-dependent citrate symporter secits2 form salmonella enterica.
15c6nbxG_



35.6 18
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
16c2k21A_



31.3 38
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
17c3nd0A_



29.8 14
PDB header:transport protein
Chain: A: PDB Molecule:sll0855 protein;
PDBTitle: x-ray crystal structure of a slow cyanobacterial cl-/h+ antiporter
18c6e8wC_



28.2 20
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: mper-tm domain of hiv-1 envelope glycoprotein (env)
19c2m0qA_



27.4 10
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
20c6btmC_



27.1 16
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
21c3wajA_



not modelled 25.7 12
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
22c2mg1A_



not modelled 25.0 22
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane protein gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the trans-2 membrane region of hiv-1 gp41 in the presence of3 hexafluoroisopropanol
23c2ndjA_



not modelled 24.4 5
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
24c5t4oJ_



not modelled 23.5 9
PDB header:hydrolase
Chain: J: PDB Molecule:atp synthase subunit b;
PDBTitle: autoinhibited e. coli atp synthase state 1
25c5yq7L_



not modelled 22.9 13
PDB header:photosynthesis
Chain: L: PDB Molecule:precursor for l subunits of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
26c6f0kF_



not modelled 22.8 10
PDB header:membrane protein
Chain: F: PDB Molecule:actf;
PDBTitle: alternative complex iii
27d2i5nl1



not modelled 22.6 20
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
28c2miiA_



not modelled 22.4 13
PDB header:protein binding
Chain: A: PDB Molecule:penicillin-binding protein activator lpob;
PDBTitle: nmr structure of e. coli lpob
29c2b6pA_



not modelled 21.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore2 state
30c3klzE_



not modelled 21.3 10
PDB header:membrane protein
Chain: E: PDB Molecule:putative formate transporter 1;
PDBTitle: pentameric formate channel with formate bound
31c5ir6A_



not modelled 21.1 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
32c4dveA_



not modelled 20.9 9
PDB header:transport protein
Chain: A: PDB Molecule:biotin transporter bioy;
PDBTitle: crystal structure at 2.1 a of the s-component for biotin from an ecf-2 type abc transporter
33c2ls4A_



not modelled 20.8 11
PDB header:metal transport
Chain: A: PDB Molecule:high affinity copper uptake protein 1;
PDBTitle: 1h chemical shift assignments for the third transmembrane domain from2 the human copper transport 1
34c4o9uB_



not modelled 20.4 9
PDB header:membrane protein
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
35d2j8cl1



not modelled 20.1 15
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
36c5wsnC_



not modelled 19.5 19
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
37c2ht2B_



not modelled 18.9 11
PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
38c6fkip_



not modelled 18.5 14
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
39c1m06J_



not modelled 18.4 43
PDB header:virus/dna
Chain: J: PDB Molecule:small core protein;
PDBTitle: structural studies of bacteriophage alpha3 assembly, x-ray2 crystallography
40c1rb8J_



not modelled 18.3 43
PDB header:virus/dna
Chain: J: PDB Molecule:small core protein;
PDBTitle: the phix174 dna binding protein j in two different capsid2 environments.
41c5xu1M_



not modelled 17.8 17
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
42c2m59B_



not modelled 17.1 17
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
43c2m59A_



not modelled 17.1 17
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
44c4hzuS_



not modelled 16.9 15
PDB header:hydrolase, transport protein
Chain: S: PDB Molecule:predicted membrane protein;
PDBTitle: structure of a bacterial energy-coupling factor transporter
45c4hydA_



not modelled 16.9 18
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a presenilin family intramembrane aspartate protease in2 c2221 space group
46d1kpla_



not modelled 16.9 14
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
47c6bbjC_



not modelled 16.8 11
PDB header:metal transport
Chain: C: PDB Molecule:transient receptor potential cation channel, subfamily v,
PDBTitle: xenopus tropicalis trpv4
48c2yiuE_



not modelled 16.5 17
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
49c3kcvG_



not modelled 16.2 12
PDB header:transport protein
Chain: G: PDB Molecule:probable formate transporter 1;
PDBTitle: structure of formate channel
50d1czan3



not modelled 16.1 43
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
51c5nikK_



not modelled 16.0 19
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
52d1j4na_



not modelled 15.8 14
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
53c6cfwF_



not modelled 15.7 10
PDB header:membrane protein
Chain: F: PDB Molecule:monovalent cation/h+ antiporter subunit b;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
54c5aexB_



not modelled 15.5 15
PDB header:membrane protein
Chain: B: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
55c2bpa3_



not modelled 15.5 43
PDB header:virus/dna
Chain: 3: PDB Molecule:protein (subunit of bacteriophage phix174);
PDBTitle: atomic structure of single-stranded dna bacteriophage2 phix174 and its functional implications
56d1eysl_



not modelled 14.8 17
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
57c1w9nA_



not modelled 14.6 11
PDB header:antibiotic
Chain: A: PDB Molecule:epilancin 15x;
PDBTitle: isolation and characterization of epilancin 15x, a novel antibiotic2 from a clinical strain of staphylococcus epidermidis
58c6o7ua_



not modelled 14.6 11
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
59c5levA_



not modelled 14.4 15
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine--dolichyl-phosphate n-
PDBTitle: crystal structure of human udp-n-acetylglucosamine-dolichyl-phosphate2 n-acetylglucosaminephosphotransferase (dpagt1) (v264g mutant)
60d1k8ke_



not modelled 14.3 9
Fold:Arp2/3 complex 21 kDa subunit ARPC3
Superfamily:Arp2/3 complex 21 kDa subunit ARPC3
Family:Arp2/3 complex 21 kDa subunit ARPC3
61d1bg3a1



not modelled 14.1 43
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
62d1czan1



not modelled 14.1 43
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
63c5d7tC_



not modelled 14.1 10
PDB header:transport protein
Chain: C: PDB Molecule:s-component for folate;
PDBTitle: folate ecf transporter: apo state
64c1p58C_



not modelled 13.6 18
PDB header:virus
Chain: C: PDB Molecule:major envelope protein e;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
65d1bg3a3



not modelled 13.5 50
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
66d1v4sa1



not modelled 13.5 50
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
67c2fynH_



not modelled 13.5 14
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c1;
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
68c2j3tB_



not modelled 13.4 8
PDB header:transport
Chain: B: PDB Molecule:trafficking protein particle complex subunit 6a;
PDBTitle: the crystal structure of the bet3-trs33-bet5-trs23 complex.
69c5aezA_



not modelled 13.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
70c5nf8A_



not modelled 12.9 5
PDB header:membrane protein
Chain: A: PDB Molecule:respiratory supercomplex factor 1, mitochondrial;
PDBTitle: solution structure of detergent-solubilized rcf1, a yeast2 mitochondrial inner membrane protein involved in respiratory complex3 iii/iv supercomplex formation
71c6nr3A_



not modelled 12.8 18
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
72c6nr3D_



not modelled 12.8 18
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
73c6nr3B_



not modelled 12.8 18
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
74c6nr3C_



not modelled 12.8 18
PDB header:transport protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
75c4djiA_



not modelled 12.6 7
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
76c6c5wA_



not modelled 12.3 15
PDB header:membrane protein
Chain: A: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the mitochondrial calcium uniporter
77c3tdsC_



not modelled 12.3 14
PDB header:membrane protein
Chain: C: PDB Molecule:formate/nitrite transporter;
PDBTitle: crystal structure of hsc f194i
78c6btmD_



not modelled 12.2 13
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
79c1zrtD_



not modelled 12.2 4
PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
80d1eysm_



not modelled 12.1 17
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
81c6dnfA_



not modelled 12.1 18
PDB header:membrane protein
Chain: A: PDB Molecule:mitochondrial calcium uniporter mcu;
PDBTitle: cryo-em structure of the mitochondrial calcium uniporter mcu from the2 fungus cyphellophora europaea
82c6gcsJ_



not modelled 12.0 10
PDB header:oxidoreductase
Chain: J: PDB Molecule:nujm subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
83c4b03A_



not modelled 11.8 13
PDB header:virus
Chain: A: PDB Molecule:dengue virus 1 e protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
84c6agfB_



not modelled 11.8 13
PDB header:membrane protein
Chain: B: PDB Molecule:sodium channel subunit beta-1;
PDBTitle: structure of the human voltage-gated sodium channel nav1.4 in complex2 with beta1
85c5yq72_



not modelled 11.7 20
PDB header:photosynthesis
Chain: 2: PDB Molecule:beta subunit of light-harvesting 1;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
86c2jpjA_



not modelled 11.6 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit alpha;
PDBTitle: lactococcin g-a in dpc
87c2mj2A_



not modelled 11.6 6
PDB header:viral protein
Chain: A: PDB Molecule:agnoprotein;
PDBTitle: structure of the dimerization domain of the human polyoma, jc virus2 agnoprotein is an amphipathic alpha-helix.
88c3tijA_



not modelled 11.5 17
PDB header:membrane protein
Chain: A: PDB Molecule:nupc family protein;
PDBTitle: crystal structure of a concentrative nucleoside transporter from2 vibrio cholerae
89c5zbgC_



not modelled 11.5 17
PDB header:membrane protein
Chain: C: PDB Molecule:short transient receptor potential channel 3;
PDBTitle: cryo-em structure of human trpc3 at 4.36a resolution
90c6j5ib_



not modelled 11.4 10
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit alpha, mitochondrial;
PDBTitle: cryo-em structure of the mammalian dp-state atp synthase
91c6btmF_



not modelled 11.4 9
PDB header:membrane protein
Chain: F: PDB Molecule:alternative complex iii subunit f;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
92c3orgB_



not modelled 11.1 12
PDB header:transport protein
Chain: B: PDB Molecule:cmclc;
PDBTitle: crystal structure of a eukaryotic clc transporter
93c1p84D_



not modelled 11.0 10
PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
94c3iyzA_



not modelled 10.9 18
PDB header:transport protein
Chain: A: PDB Molecule:aquaporin-4;
PDBTitle: structure of aquaporin-4 s180d mutant at 10.0 a resolution from2 electron micrograph
95c5lnko_



not modelled 10.9 17
PDB header:oxidoreductase
Chain: O: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
96c5dirD_



not modelled 10.8 22
PDB header:hydrolase
Chain: D: PDB Molecule:lipoprotein signal peptidase;
PDBTitle: membrane protein at 2.8 angstroms
97c5l2bC_



not modelled 10.8 16
PDB header:transport protein
Chain: C: PDB Molecule:nucleoside permease;
PDBTitle: structure of cntnw n149s, e332a in an outward-facing state
98c3llqB_



not modelled 10.7 11
PDB header:membrane protein
Chain: B: PDB Molecule:aquaporin z 2;
PDBTitle: aquaporin structure from plant pathogen agrobacterium tumerfaciens
99c3j8eG_



not modelled 10.7 9
PDB header:transport protein/isomerase
Chain: G: PDB Molecule:ryanodine receptor 1;
PDBTitle: cryo-em structure of ryanodine receptor/calstabin-2 complex

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Transmembrane helix prediction 

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