Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1615_(-)_1815260_1815700
DateFri Aug 2 13:30:20 BST 2019
Unique Job ID09c5a55374337caf
SequenceMGLRPARVVR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.827 Y:39.283 Z:25.508
Model (left) based on template c6o7ua_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
Confidence and coverage
Confidence: 91.9% Coverage: 40%
58 residues ( 40% of your sequence) have been modelled with 91.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6o7ua_



91.9 21
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
2c5gasN_



66.7 20
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
3c5i1mV_



54.4 17
PDB header:membrane protein
Chain: V: PDB Molecule:v-type proton atpase subunit a, vacuolar isoform;
PDBTitle: yeast v-atpase average of densities, a subunit segment
4d1kf6d_



52.4 25
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
5c6o7xa_



43.4 28
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
6c5voxb_



25.7 16
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase in complex with legionella pneumophila effector sidk2 (rotational state 1)
7c2aklA_



25.5 42
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:phna-like protein pa0128;
PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
8d1epwa2



24.9 33
Fold:beta-Trefoil
Superfamily:STI-like
Family:Clostridium neurotoxins, C-terminal domain
9c1erfA_



24.0 42
PDB header:viral protein
Chain: A: PDB Molecule:transmembrane glycoprotein;
PDBTitle: conformational mapping of the n-terminal fusion peptide of2 hiv-1 gp41 using 13c-enhanced fourier transform infrared3 spectroscopy (ftir)
10c2pjvA_



17.9 42
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: solution structure of hiv-1 gp41 fusion domain bound to dpc micelle
11c5xvjB_



15.6 21
PDB header:gene regulation
Chain: B: PDB Molecule:phd finger protein alfin-like 7;
PDBTitle: crystal structure of al7 pal domain
12c5tj5A_



15.5 18
PDB header:motor protein
Chain: A: PDB Molecule:v-type proton atpase subunit a;
PDBTitle: atomic model for the membrane-embedded motor of a eukaryotic v-atpase
13c5nwuA_



14.8 44
PDB header:viral protein
Chain: A: PDB Molecule:wtfp-tag,gp41;
PDBTitle: nmr assignment and structure of a peptide derived from the fusion2 peptide of hiv-1 gp41 in the presence of hexafluoroisopropanol
14c6cfwB_



13.7 27
PDB header:membrane protein
Chain: B: PDB Molecule:monovalent cation/h+ antiporter subunit f;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
15c2jxfA_



11.9 23
PDB header:viral protein, membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: the solution structure of hcv ns4b(40-69)
16c2ariA_



8.8 22
PDB header:viral protein
Chain: A: PDB Molecule:envelope polyprotein gp160;
PDBTitle: solution structure of micelle-bound fusion domain of hiv-12 gp41
17c4nl6C_



8.0 12
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
18c1p5aA_



7.5 42
PDB header:viral protein
Chain: A: PDB Molecule:envelope polyprotein gp160;
PDBTitle: conformational mapping of the n-terminal peptide of hiv-12 gp41 in lipid detergent and aqueous environments using 13c-3 enhanced fourier transform infrared spectroscopy
19c5xtdo_



7.5 16
PDB header:oxidoreductase/electron transport
Chain: O: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 2,
PDBTitle: cryo-em structure of human respiratory complex i
20c1s0bA_



7.4 33
PDB header:toxin, hydrolase
Chain: A: PDB Molecule:botulinum neurotoxin type b;
PDBTitle: crystal structure of botulinum neurotoxin type b at ph 4.0
21c4pv1E_



not modelled 7.2 12
PDB header:electron transport/inhibitor
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: cytochrome b6f structure from m. laminosus with the quinone analog2 inhibitor stigmatellin
22c4i7zE_



not modelled 7.2 12
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of cytochrome b6f in dopg, with disordered rieske2 iron-sulfur protein soluble domain
23c5vf3Z_



not modelled 6.4 31
PDB header:virus
Chain: Z: PDB Molecule:highly immunogenic outer capsid protein;
PDBTitle: bacteriophage t4 isometric capsid
24c5ldwg_



not modelled 6.4 18
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class1
25c6b4iD_



not modelled 6.3 20
PDB header:transport protein
Chain: D: PDB Molecule:nucleoporin like 2;
PDBTitle: crystal structure of human gle1 ctd-nup42 gbm-ddx19b(adp) complex
26d3btaa2



not modelled 6.3 17
Fold:beta-Trefoil
Superfamily:STI-like
Family:Clostridium neurotoxins, C-terminal domain
27c6hu9t_



not modelled 6.2 23
PDB header:oxidoreductase/electron transport
Chain: T: PDB Molecule:cytochrome b-c1 complex subunit 9;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
28c3jcuw_



not modelled 6.1 20
PDB header:membrane protein
Chain: W: PDB Molecule:photosystem ii reaction center w protein, chloroplastic;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
29d1kf6c_



not modelled 6.0 9
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
30c6b4jD_



not modelled 5.9 20
PDB header:transport protein
Chain: D: PDB Molecule:nucleoporin like 2;
PDBTitle: crystal structure of human gle1 ctd-nup42 gbm-ddx19b(amppnp) complex
31d3pcca_



not modelled 5.9 35
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
32c2e74E_



not modelled 5.7 12
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
33c4h13E_



not modelled 5.7 12
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from mastigocladus2 laminosus with tds
34c2e76E_



not modelled 5.7 12
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
35d2e74e1



not modelled 5.7 12
Fold:Single transmembrane helix
Superfamily:PetL subunit of the cytochrome b6f complex
Family:PetL subunit of the cytochrome b6f complex
36c2e75E_



not modelled 5.7 12
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
37c4h0lE_



not modelled 5.7 12
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: cytochrome b6f complex crystal structure from mastigocladus laminosus2 with n-side inhibitor nqno
38c1vf5R_



not modelled 5.7 12
PDB header:photosynthesis
Chain: R: PDB Molecule:protein pet l;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
39d2burb1



not modelled 5.6 35
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
40d3pccm_



not modelled 5.5 29
Fold:Prealbumin-like
Superfamily:Aromatic compound dioxygenase
Family:Aromatic compound dioxygenase
41c4l6uB_



not modelled 5.5 33
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of af1868: cmr1 subunit of the cmr rna silencing2 complex
42d2j8cl1



not modelled 5.4 30
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
43c2boyC_



not modelled 5.4 47
PDB header:oxidoreductase
Chain: C: PDB Molecule:3-chlorocatechol 1,2-dioxygenase;
PDBTitle: crystal structure of 3-chlorocatechol 1,2-dioxygenase from rhodococcus2 opacus 1cp

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below