Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1616_(-)_1815690_1816088
DateFri Aug 2 13:30:21 BST 2019
Unique Job ID1c4558b4f6246948
SequenceMEASGRQRRY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:17.550 Y:16.276 Z:22.772
Model (left) based on template c5b46B_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoacid--ferredoxin oxidoreductase beta subunit;
PDBTitle: 2-oxoacid:ferredoxin oxidoreductase 2 from sulfolobus tokodai - ligand2 free form
Confidence and coverage
Confidence: 70.8% Coverage: 11%
15 residues ( 11% of your sequence) have been modelled with 70.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5b46B_



70.8 47
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoacid--ferredoxin oxidoreductase beta subunit;
PDBTitle: 2-oxoacid:ferredoxin oxidoreductase 2 from sulfolobus tokodai - ligand2 free form
2c6n2oB_



55.2 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyruvate ferredoxin/flavodoxin oxidoreductase, beta
PDBTitle: 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus2 with 2-oxoglutarate, coenzyme a and succinyl-coa bound
3c5c4iC_



45.8 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:oxalate oxidoreductase subunit beta;
PDBTitle: structure of an oxalate oxidoreductase
4c5l9wC_



39.8 43
PDB header:ligase
Chain: C: PDB Molecule:acetophenone carboxylase beta subunit;
PDBTitle: crystal structure of the apc core complex
5c5m45I_



35.8 50
PDB header:ligase
Chain: I: PDB Molecule:acetone carboxylase gamma subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
6c5yf1A_



28.8 20
PDB header:transferase
Chain: A: PDB Molecule:carnosine n-methyltransferase;
PDBTitle: crystal structure of carnmt1 bound to carnosine and sfg
7d2c42a2



25.8 20
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:PFOR PP module
8c2jm2A_



24.7 80
PDB header:hormone/growth factor
Chain: A: PDB Molecule:insulin-like growth factor-binding protein 6;
PDBTitle: structure of the n-terminal subdomain of insulin-like2 growth factor (igf) binding protein-6 and its interactions3 with igfs
9c3ju6A_



23.3 33
PDB header:transferase
Chain: A: PDB Molecule:arginine kinase;
PDBTitle: crystal structure of dimeric arginine kinase in complex with2 amppnp and arginine
10c2crcA_



22.3 71
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin conjugating enzyme 7 interacting
PDBTitle: solution structure of the zf-ranbp domain of the protein2 hbv associated factor
11c4o9pC_



22.2 24
PDB header:membrane protein
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit alpha 2;
PDBTitle: crystal structure of thermus thermophilis transhydrogeanse domain ii2 dimer semet derivative
12c3l2eB_



20.3 33
PDB header:transferase
Chain: B: PDB Molecule:glycocyamine kinase beta chain;
PDBTitle: glycocyamine kinase, alpha-beta heterodimer from marine worm2 namalycastis sp.
13c3zqjF_



18.2 38
PDB header:dna binding protein
Chain: F: PDB Molecule:uvrabc system protein a;
PDBTitle: mycobacterium tuberculosis uvra
14d1crka2



17.6 33
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
15c1i0eD_



17.1 33
PDB header:transferase
Chain: D: PDB Molecule:creatine kinase,m chain;
PDBTitle: crystal structure of creatine kinase from human muscle
16c3na7A_



17.0 67
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
17d1vd4a_



15.9 38
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
18c2a45L_



15.7 38
PDB header:hydrolase/hydrolase inhibitor
Chain: L: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of the complex between thrombin and the central "e"2 region of fibrin
19c2y0fD_



15.5 80
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
20c1nuiA_



15.3 50
PDB header:replication
Chain: A: PDB Molecule:dna primase/helicase;
PDBTitle: crystal structure of the primase fragment of bacteriophage t7 primase-2 helicase protein
21d2dlqa2



not modelled 15.3 57
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
22d1u6ra2



not modelled 14.8 31
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
23c1rl9A_



not modelled 14.7 38
PDB header:transferase
Chain: A: PDB Molecule:arginine kinase;
PDBTitle: crystal structure of creatine-adp arginine kinase ternary2 complex
24d1g0wa2



not modelled 14.7 46
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
25d1qh4a2



not modelled 14.7 46
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
26d1m15a2



not modelled 14.5 38
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
27c2n1pA_



not modelled 14.0 24
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 5b, ns5b;
PDBTitle: structure of the c-terminal membrane domain of hcv ns5b protein
28c5x62A_



not modelled 13.7 40
PDB header:transferase
Chain: A: PDB Molecule:carnosine n-methyltransferase;
PDBTitle: crystal structure of a carnosine n-methyltransferase bound by adohcy
29d1vrpa2



not modelled 13.6 38
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Guanido kinase catalytic domain
30c1wcoN_



not modelled 13.6 50
PDB header:peptide/antibiotic
Chain: N: PDB Molecule:nisin z;
PDBTitle: the solution structure of the nisin-lipid ii complex
31d1x4la2



not modelled 13.4 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
32d1k82a3



not modelled 13.3 36
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
33c1qk1H_



not modelled 13.3 31
PDB header:transferase (creatine kinase)
Chain: H: PDB Molecule:creatine kinase, ubiquitous mitochondrial;
PDBTitle: crystal structure of human ubiquitous mitochondrial creatine kinase
34c6fh2A_



not modelled 13.1 31
PDB header:signaling protein
Chain: A: PDB Molecule:protein-arginine kinase;
PDBTitle: protein arginine kinase mcsb in the amp-pn-bound state
35d1ee8a3



not modelled 13.0 24
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
36c4iloA_



not modelled 13.0 29
PDB header:unknown function
Chain: A: PDB Molecule:ct398;
PDBTitle: 2.12a resolution structure of ct398 from chlamydia trachomatis
37c3noyA_



not modelled 12.9 80
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
38c3a44D_



not modelled 12.7 50
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
39d1k18a_



not modelled 12.6 75
Fold:Zinc finger domain of DNA polymerase-alpha
Superfamily:Zinc finger domain of DNA polymerase-alpha
Family:Zinc finger domain of DNA polymerase-alpha
40d1k3xa3



not modelled 12.4 36
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
41c3hkzP_



not modelled 12.3 60
PDB header:transferase
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: the x-ray crystal structure of rna polymerase from archaea
42c3b08H_



not modelled 12.3 71
PDB header:signaling protein/metal binding protein
Chain: H: PDB Molecule:ranbp-type and c3hc4-type zinc finger-containing protein 1;
PDBTitle: crystal structure of the mouse hoil1-l-nzf in complex with linear di-2 ubiquitin
43c5o9zN_



not modelled 12.2 38
PDB header:splicing
Chain: N: PDB Molecule:zinc finger matrin-type protein 2;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
44c2bx9J_



not modelled 12.0 67
PDB header:transcription regulation
Chain: J: PDB Molecule:tryptophan rna-binding attenuator protein-inhibitory
PDBTitle: crystal structure of b.subtilis anti-trap protein, an2 antagonist of trap-rna interactions
45d1dgsa1



not modelled 11.9 57
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:NAD+-dependent DNA ligase, domain 3
46c1vw4W_



not modelled 11.8 80
PDB header:ribosome
Chain: W: PDB Molecule:54s ribosomal protein l32, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
47d1l1ta3



not modelled 11.7 40
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
48c5fywW_



not modelled 11.6 33
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: transcription initiation complex structures elucidate dna opening (oc)
49c1x31D_



not modelled 11.6 57
PDB header:oxidoreductase
Chain: D: PDB Molecule:sarcosine oxidase delta subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
50d1tdza3



not modelled 11.2 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
51c2kveA_



not modelled 11.1 43
PDB header:hormone
Chain: A: PDB Molecule:mesencephalic astrocyte-derived neurotrophic factor;
PDBTitle: c-terminal domain of mesencephalic astrocyte-derived neurotrophic2 factor (manf)
52c6cipD_



not modelled 11.0 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with2 acetyl-tpp bound
53c4esjA_



not modelled 10.7 50
PDB header:hydrolase/dna
Chain: A: PDB Molecule:type-2 restriction enzyme dpni;
PDBTitle: restriction endonuclease dpni in complex with target dna
54c2c3yA_



not modelled 10.6 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
55c3jq3A_



not modelled 10.6 23
PDB header:transferase
Chain: A: PDB Molecule:lombricine kinase;
PDBTitle: crystal structure of lombricine kinase, complexed with substrate adp
56d1nuia2



not modelled 10.5 43
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:DNA primase zinc finger
57d1r2za3



not modelled 10.3 40
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
58d1m3va1



not modelled 10.2 45
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
59c2opfA_



not modelled 9.8 44
PDB header:hydrolase/dna
Chain: A: PDB Molecule:endonuclease viii;
PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
60c2kdxA_



not modelled 9.6 33
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
61d1pfta_



not modelled 9.2 50
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
62c5y06A_



not modelled 9.0 57
PDB header:unknown function
Chain: A: PDB Molecule:msmeg_4306;
PDBTitle: structural characterization of msmeg_4306 from mycobacterium smegmatis
63d1dxsa_



not modelled 9.0 67
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
64c2epqA_



not modelled 8.8 33
PDB header:transcription
Chain: A: PDB Molecule:poz-, at hook-, and zinc finger-containing
PDBTitle: solution structure of the third zinc finger domain of zinc2 finger protein 278
65d1dl6a_



not modelled 8.7 22
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
66d1nj8a3



not modelled 8.4 31
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
67c4v195_



not modelled 8.3 80
PDB header:ribosome
Chain: 5: PDB Molecule:mitoribosomal protein bl32m, mrpl32;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
68d1h7va_



not modelled 8.3 33
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
69c6o9lQ_



not modelled 8.2 38
PDB header:transcription/dna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the closed state
70c6o3pA_



not modelled 8.1 67
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
71c2f5qA_



not modelled 8.1 44
PDB header:hydrolase/dna
Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase;
PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2
72c4wo8A_



not modelled 8.1 38
PDB header:transferase
Chain: A: PDB Molecule:taurocyamine kinase;
PDBTitle: the substrate-free duplicated taurocyamine kinase from schistosoma2 mansoni
73c2mrfA_



not modelled 8.0 50
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rad18;
PDBTitle: nmr structure of the ubiquitin-binding zinc finger (ubz) domain from2 human rad18
74c3zywB_



not modelled 8.0 31
PDB header:metal binding protein
Chain: B: PDB Molecule:glutaredoxin-3;
PDBTitle: crystal structure of the first glutaredoxin domain of human2 glutaredoxin 3 (glrx3)
75d1ywsa1



not modelled 8.0 67
Fold:Rubredoxin-like
Superfamily:CSL zinc finger
Family:CSL zinc finger
76c2vf7B_



not modelled 7.9 38
PDB header:dna binding protein
Chain: B: PDB Molecule:excinuclease abc, subunit a.;
PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
77c3rpfC_



not modelled 7.9 43
PDB header:transferase
Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad);
PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695
78c5y4uA_



not modelled 7.8 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:monothiol glutaredoxin-3;
PDBTitle: crystal structure of grx domain of grx3 from saccharomyces cerevisiae
79c2k5cA_



not modelled 7.8 57
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein pf0385;
PDBTitle: nmr structure for pf0385
80c2v3bB_



not modelled 7.7 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:rubredoxin 2;
PDBTitle: crystal structure of the electron transfer complex rubredoxin -2 rubredoxin reductase from pseudomonas aeruginosa.
81c3mjhD_



not modelled 7.7 57
PDB header:protein transport
Chain: D: PDB Molecule:early endosome antigen 1;
PDBTitle: crystal structure of human rab5a in complex with the c2h2 zinc finger2 of eea1
82c4ce45_



not modelled 7.6 80
PDB header:ribosome
Chain: 5: PDB Molecule:mrpl32;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
83d2cu8a1



not modelled 7.6 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
84c2kn9A_



not modelled 7.5 25
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a
85d2ct1a1



not modelled 7.5 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
86d1qcva_



not modelled 7.4 42
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
87d1hk8a_



not modelled 7.4 50
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
88c1hk8A_



not modelled 7.4 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases: nrdd in complex with dgtp
89d1wiia_



not modelled 7.4 44
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Putative zinc binding domain
90c2kkhA_



not modelled 7.4 22
PDB header:metal transport
Chain: A: PDB Molecule:putative heavy metal transporter;
PDBTitle: structure of the zinc binding domain of the atpase hma4
91d1wgea1



not modelled 7.4 67
Fold:Rubredoxin-like
Superfamily:CSL zinc finger
Family:CSL zinc finger
92c1ee8A_



not modelled 7.4 67
PDB header:dna binding protein
Chain: A: PDB Molecule:mutm (fpg) protein;
PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8
93c5ywrB_



not modelled 7.3 44
PDB header:signaling protein
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase znrf1;
PDBTitle: crystal structure of ring e3 ligase znrf1 in complex with ube2n2 (ubc13)
94d1qypa_



not modelled 7.3 56
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:Transcriptional factor domain
95c2en8A_



not modelled 7.3 29
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 224;
PDBTitle: solution structure of the c2h2 type zinc finger (region 171-2 203) of human zinc finger protein 224
96c5iy9Q_



not modelled 7.2 38
PDB header:transcription, transferase/dna/rna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the initial transcribing state (no iis)
97d2fiya1



not modelled 7.0 71
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
98d1p6ta2



not modelled 6.8 44
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
99c1s24A_



not modelled 6.8 33
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin 2;
PDBTitle: rubredoxin domain ii from pseudomonas oleovorans

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