Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1622c_(cydB)_1823367_1824407
DateFri Aug 2 13:30:21 BST 2019
Unique Job IDfcc2e5c2c5484c96
SequenceVVLQELWFGV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.713 Y:54.848 Z:65.255
Model (left) based on template c5ir6B_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
Confidence and coverage
Confidence:100.0% Coverage: 92%
319 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ir6B_



100.0 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
2c6cfwG_



87.9 10
PDB header:membrane protein
Chain: G: PDB Molecule:monovalent cation/h+ antiporter subunit c;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
3c6f0kC_



71.6 10
PDB header:membrane protein
Chain: C: PDB Molecule:polysulphide reductase nrfd;
PDBTitle: alternative complex iii
4c3m7eA_



57.5 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein teha homolog;
PDBTitle: crystal structure of plant slac1 homolog teha
5c3m7bA_



57.5 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tellurite resistance protein teha homolog;
PDBTitle: crystal structure of plant slac1 homolog teha
6c2yevB_



45.1 14
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
7c4djiA_



35.3 15
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
8d1fftb2



34.1 19
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
9c5ir6A_



29.3 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
10c6f0kF_



26.6 12
PDB header:membrane protein
Chain: F: PDB Molecule:actf;
PDBTitle: alternative complex iii
11d1ejxc2



24.2 25
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:alpha-subunit of urease, catalytic domain
12c5wudA_



24.1 28
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structural basis for conductance through tric cation channels
13d1e9yb2



22.3 22
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:alpha-subunit of urease, catalytic domain
14c4lhdB_



18.9 38
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine dehydrogenase [decarboxylating];
PDBTitle: crystal structure of synechocystis sp. pcc 6803 glycine decarboxylase2 (p-protein), holo form with pyridoxal-5'-phosphate and glycine,3 closed flexible loop
15c4rymA_



18.1 11
PDB header:membrane protein
Chain: A: PDB Molecule:integral membrane protein;
PDBTitle: crystal structure of bctspo iodo type1 monomer
16d2r6gf1



17.7 13
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
17c1ar1B_



16.6 9
PDB header:complex (oxidoreductase/antibody)
Chain: B: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment
18c1qleB_



16.6 9
PDB header:oxidoreductase/immune system
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit cytochrome2 c oxidase in the completely oxidized state complexed with an antibody3 fv fragment
19c5fayA_



14.9 19
PDB header:lyase
Chain: A: PDB Molecule:choline trimethylamine-lyase;
PDBTitle: y208f mutant of choline tma-lyase
20c2bo9B_



11.4 19
PDB header:hydrolase
Chain: B: PDB Molecule:human latexin;
PDBTitle: human carboxypeptidase a4 in complex with human latexin.
21c2f3oB_



not modelled 10.7 19
PDB header:unknown function
Chain: B: PDB Molecule:pyruvate formate-lyase 2;
PDBTitle: crystal structure of a glycyl radical enzyme from archaeoglobus2 fulgidus
22c5a0uA_



not modelled 10.6 29
PDB header:lyase
Chain: A: PDB Molecule:choline trimethylamine lyase;
PDBTitle: structure of cutc choline lyase choline bound form from klebsiella2 pneumoniae.
23c5ymrB_



not modelled 10.3 19
PDB header:lyase
Chain: B: PDB Molecule:formate acetyltransferase;
PDBTitle: the crystal structure of iseg
24c6hwhL_



not modelled 10.3 12
PDB header:electron transport
Chain: L: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
25c5lnkn_



not modelled 8.9 24
PDB header:oxidoreductase
Chain: N: PDB Molecule:mitochondrial complex i, nd2 subunit;
PDBTitle: entire ovine respiratory complex i
26c5wufA_



not modelled 8.1 23
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein;
PDBTitle: structural basis for conductance through tric cation channels
27c2ktaA_



not modelled 7.9 42
PDB header:hydrolase
Chain: A: PDB Molecule:putative helicase;
PDBTitle: solution nmr structure of a domain of protein a6ky75 from bacteroides2 vulgatus, northeast structural genomics target bvr106a
28c5xmjG_



not modelled 7.8 14
PDB header:electron transport
Chain: G: PDB Molecule:fumarate reductase respiratory complex;
PDBTitle: crystal structure of quinol:fumarate reductase from desulfovibrio2 gigas
29c5h36E_



not modelled 7.7 17
PDB header:membrane protein
Chain: E: PDB Molecule:uncharacterized protein tric;
PDBTitle: crystal structures of the tric trimeric intracellular cation channel2 orthologue from rhodobacter sphaeroides
30c1fftG_



not modelled 7.6 8
PDB header:oxidoreductase
Chain: G: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
31c5h35C_



not modelled 7.6 16
PDB header:immune system/membrane protein
Chain: C: PDB Molecule:membrane protein tric;
PDBTitle: crystal structures of the tric trimeric intracellular cation channel2 orthologue from sulfolobus solfataricus
32c5i1mV_



not modelled 7.2 13
PDB header:membrane protein
Chain: V: PDB Molecule:v-type proton atpase subunit a, vacuolar isoform;
PDBTitle: yeast v-atpase average of densities, a subunit segment
33c5jffC_



not modelled 7.2 27
PDB header:transferase
Chain: C: PDB Molecule:probable adenosine monophosphate-protein transferase fic;
PDBTitle: e. coli ecfict mutant g55r in complex with ecfica
34c4x2eA_



not modelled 7.2 36
PDB header:transferase
Chain: A: PDB Molecule:fic family protein putative filamentation induced by camp
PDBTitle: clostridium difficile wild type fic protein
35c4ylfA_



not modelled 7.2 60
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase b (nad(+)), electron transfer
PDBTitle: insights into flavin-based electron bifurcation via the nadh-dependent2 reduced ferredoxin-nadp oxidoreductase structure
36c5ly0B_



not modelled 6.9 18
PDB header:transcription
Chain: B: PDB Molecule:lob family transfactor ramosa2.1;
PDBTitle: crystal structure of lob domain of ramosa2 from wheat
37c4heaJ_



not modelled 6.7 9
PDB header:oxidoreductase
Chain: J: PDB Molecule:nadh-quinone oxidoreductase subunit 10;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
38c4hkrB_



not modelled 6.4 14
PDB header:transport protein
Chain: B: PDB Molecule:calcium release-activated calcium channel protein 1;
PDBTitle: calcium release-activated calcium (crac) channel orai
39c2mgyA_



not modelled 5.9 20
PDB header:membrane protein
Chain: A: PDB Molecule:translocator protein;
PDBTitle: solution structure of the mitochondrial translocator protein (tspo) in2 complex with its high-affinity ligand pk11195
40c2hfzA_



not modelled 5.5 23
PDB header:transferase
Chain: A: PDB Molecule:rna-directed rna polymerase(ns5);
PDBTitle: crystal structure of rna dependent rna polymerase domain2 from west nile virus
41c5voxb_



not modelled 5.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase in complex with legionella pneumophila effector sidk2 (rotational state 1)
42c2v5iA_



not modelled 5.3 63
PDB header:viral protein
Chain: A: PDB Molecule:salmonella typhimurium db7155 bacteriophage det7 tailspike;
PDBTitle: structure of the receptor-binding protein of bacteriophage det7: a2 podoviral tailspike in a myovirus
43c4hkrA_



not modelled 5.2 14
PDB header:transport protein
Chain: A: PDB Molecule:calcium release-activated calcium channel protein 1;
PDBTitle: calcium release-activated calcium (crac) channel orai
44c6nbxG_



not modelled 5.2 14
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below