Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1623c_(cydA)_1824437_1825894
DateFri Aug 2 13:30:21 BST 2019
Unique Job ID8ec71fc089a1e834
SequenceMNVVDISRWQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.259 Y:51.290 Z:74.803
Model (left) based on template c5ir6A_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
Confidence and coverage
Confidence:100.0% Coverage: 88%
427 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ir6A_



100.0 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
2c3mk7K_



96.5 12
PDB header:oxidoreductase
Chain: K: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit n;
PDBTitle: the structure of cbb3 cytochrome oxidase
3c6elhA_



94.3 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase;
PDBTitle: low resolution structure of neisseria meningitidis qnor
4c5ir6B_



93.3 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
5c2yevA_



91.0 15
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c oxidase polypeptide i+iii;
PDBTitle: structure of caa3-type cytochrome oxidase
6c4xydA_



89.2 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase subunit b;
PDBTitle: nitric oxide reductase from roseobacter denitrificans (rdnor)
7c1fftF_



88.4 15
PDB header:oxidoreductase
Chain: F: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
8d1ffta_



88.4 15
Fold:Cytochrome c oxidase subunit I-like
Superfamily:Cytochrome c oxidase subunit I-like
Family:Cytochrome c oxidase subunit I-like
9c3eh4A_



87.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c oxidase subunit 1;
PDBTitle: structure of the reduced form of cytochrome ba3 oxidase from thermus2 thermophilus
10c3aygA_



85.5 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
11c6hwhQ_



81.6 16
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 1;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
12c4wgwA_



81.4 16
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
13c4wgvC_



81.4 16
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
14d1xmea1



80.8 16
Fold:Cytochrome c oxidase subunit I-like
Superfamily:Cytochrome c oxidase subunit I-like
Family:Cytochrome c oxidase subunit I-like
15c6o7ua_



75.3 12
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
16c5voxb_



74.6 11
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase in complex with legionella pneumophila effector sidk2 (rotational state 1)
17d1ar1a_



73.9 14
Fold:Cytochrome c oxidase subunit I-like
Superfamily:Cytochrome c oxidase subunit I-like
Family:Cytochrome c oxidase subunit I-like
18d3dtua1



67.9 17
Fold:Cytochrome c oxidase subunit I-like
Superfamily:Cytochrome c oxidase subunit I-like
Family:Cytochrome c oxidase subunit I-like
19c3o0rB_



65.7 8
PDB header:immune system/oxidoreductase
Chain: B: PDB Molecule:nitric oxide reductase subunit b;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
20c6hu9m_



63.8 15
PDB header:oxidoreductase/electron transport
Chain: M: PDB Molecule:cytochrome b-c1 complex subunit 2, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
21d1v54a_



not modelled 61.1 14
Fold:Cytochrome c oxidase subunit I-like
Superfamily:Cytochrome c oxidase subunit I-like
Family:Cytochrome c oxidase subunit I-like
22c1m56G_



not modelled 58.7 15
PDB header:oxidoreductase
Chain: G: PDB Molecule:cytochrome c oxidase;
PDBTitle: structure of cytochrome c oxidase from rhodobactor2 sphaeroides (wild type)
23c4djiA_



not modelled 53.8 14
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
24c5i6xA_



not modelled 50.4 15
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
25c4tqvI_



not modelled 50.1 13
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
26c4l6rA_



not modelled 49.7 17
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562 and glucagon receptor chimera;
PDBTitle: structure of the class b human glucagon g protein coupled receptor
27c6btmF_



not modelled 45.4 13
PDB header:membrane protein
Chain: F: PDB Molecule:alternative complex iii subunit f;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
28c6iiuA_



not modelled 44.0 14
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562,thromboxane a2 receptor,rubredoxin,
PDBTitle: crystal structure of the human thromboxane a2 receptor bound to2 ramatroban
29c5nf8A_



not modelled 35.9 18
PDB header:membrane protein
Chain: A: PDB Molecule:respiratory supercomplex factor 1, mitochondrial;
PDBTitle: solution structure of detergent-solubilized rcf1, a yeast2 mitochondrial inner membrane protein involved in respiratory complex3 iii/iv supercomplex formation
30c4ainB_



not modelled 28.4 12
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
31c6nbxG_



not modelled 27.6 16
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
32c6btmC_



not modelled 25.9 13
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
33c3kp9A_



not modelled 23.4 24
PDB header:blood coagulation,oxidoreductase
Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein;
PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase
34d2j8cl1



not modelled 20.4 14
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
35c5i1mV_



not modelled 18.5 16
PDB header:membrane protein
Chain: V: PDB Molecule:v-type proton atpase subunit a, vacuolar isoform;
PDBTitle: yeast v-atpase average of densities, a subunit segment
36c5tj5A_



not modelled 18.2 10
PDB header:motor protein
Chain: A: PDB Molecule:v-type proton atpase subunit a;
PDBTitle: atomic model for the membrane-embedded motor of a eukaryotic v-atpase
37c5lnkq_



not modelled 16.6 21
PDB header:oxidoreductase
Chain: Q: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
38c5gasN_



not modelled 16.4 14
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
39c4or2A_



not modelled 15.9 14
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562, metabotropic glutamate receptor 1;
PDBTitle: human class c g protein-coupled metabotropic glutamate receptor 1 in2 complex with a negative allosteric modulator
40d2p3ha1



not modelled 15.5 15
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
41c6f0kC_



not modelled 15.2 13
PDB header:membrane protein
Chain: C: PDB Molecule:polysulphide reductase nrfd;
PDBTitle: alternative complex iii
42c6iedA_



not modelled 14.8 15
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
43c6gcsW_



not modelled 14.8 13
PDB header:oxidoreductase
Chain: W: PDB Molecule:nb6m subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
44c2l9uA_



not modelled 14.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
45c2l9uB_



not modelled 14.5 13
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
46c3lw52_



not modelled 14.4 13
PDB header:photosynthesis
Chain: 2: PDB Molecule:type ii chlorophyll a/b binding protein from photosystem i;
PDB Fragment:residues 81-246; PDBTitle: improved model of plant photosystem i
47d2r2za1



not modelled 14.3 38
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
48c3wkxA_



not modelled 14.3 12
PDB header:hydrolase
Chain: A: PDB Molecule:non-reducing end beta-l-arabinofuranosidase;
PDBTitle: crystal structure of gh127 beta-l-arabinofuranosidase hypba1 from2 bifidobacterium longum arabinose complex form
49d2r6gf2



not modelled 14.0 11
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
50c5z62N_



not modelled 13.8 20
PDB header:electron transport
Chain: N: PDB Molecule:cytochrome c oxidase subunit ndufa4;
PDBTitle: structure of human cytochrome c oxidase
51c2bbjB_



not modelled 13.5 22
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
52c5yq7L_



not modelled 12.7 12
PDB header:photosynthesis
Chain: L: PDB Molecule:precursor for l subunits of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
53c6ex6A_



not modelled 12.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:six-hairpin glycosidase;
PDBTitle: the gh127, beta-arabinofuranosidase, bt3674
54d3deda1



not modelled 12.5 38
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
55d1eysm_



not modelled 12.0 19
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
56d2o3ga1



not modelled 11.8 31
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
57c3mepC_



not modelled 11.5 15
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein eca2234;
PDBTitle: crystal structure of eca2234 protein from erwinia carotovora,2 northeast structural genomics consortium target ewr44
58c5o31Z_



not modelled 11.4 21
PDB header:oxidoreductase
Chain: Z: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: mitochondrial complex i in the deactive state
59c5kbuA_



not modelled 11.2 19
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
60c5yq7M_



not modelled 11.0 18
PDB header:photosynthesis
Chain: M: PDB Molecule:precursor for m subunits of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
61c3dedB_



not modelled 10.4 38
PDB header:membrane protein
Chain: B: PDB Molecule:probable hemolysin;
PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum
62c6cxhC_



not modelled 10.0 10
PDB header:oxidoreductase
Chain: C: PDB Molecule:particulate methane monooxygenase, c subunit;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylomicrobium alcaliphilum 20z
63c5mqoA_



not modelled 9.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:non-reducing end beta-l-arabinofuranosidase;
PDBTitle: glycoside hydrolase bt_1003
64c3lemA_



not modelled 9.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:fructosyltransferase;
PDBTitle: crystal structure of fructosyltransferase (d191a) from a. japonicus in2 complex with nystose
65c4eqvA_



not modelled 9.5 24
PDB header:hydrolase
Chain: A: PDB Molecule:invertase 2;
PDBTitle: structure of saccharomyces cerevisiae invertase
66c2lomA_



not modelled 9.5 9
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1a;
PDBTitle: backbone structure of human membrane protein higd1a
67c3fh6F_



not modelled 9.5 12
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
68c4ev6E_



not modelled 9.5 23
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
69d2j8cm1



not modelled 9.4 20
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
70c5opjA_



not modelled 9.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:rhamnogalacturonan lyase;
PDBTitle: rhamnogalacturonan lyase
71c2km1A_



not modelled 9.2 18
PDB header:protein binding
Chain: A: PDB Molecule:protein dre2;
PDBTitle: solution structure of the n-terminal domain of the yeast protein dre2
72d2oaia1



not modelled 9.0 38
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
73c5fk8B_



not modelled 8.8 25
PDB header:hydrolase
Chain: B: PDB Molecule:beta-fructofuranosidase;
PDBTitle: structure of d80a-fructofuranosidase from xanthophyllomyces2 dendrorhous complexed with neo-erlose
74d2nqwa1



not modelled 8.7 15
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
75d2gz4a1



not modelled 8.5 8
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:HD domain
76c2ls4A_



not modelled 8.4 29
PDB header:metal transport
Chain: A: PDB Molecule:high affinity copper uptake protein 1;
PDBTitle: 1h chemical shift assignments for the third transmembrane domain from2 the human copper transport 1
77d2rk5a1



not modelled 8.2 38
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
78d2i5nm1



not modelled 8.2 19
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
79c5xh9A_



not modelled 8.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:extracellular invertase;
PDBTitle: aspergillus kawachii beta-fructofuranosidase
80c5n9yB_



not modelled 8.0 12
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb
81c4tkrB_



not modelled 7.9 17
PDB header:membrane protein
Chain: B: PDB Molecule:thiamine transporter thia;
PDBTitle: native-sad phasing for thit from listeria monocytogenes serovar.
82d2plsa1



not modelled 7.9 31
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
83c3j20J_



not modelled 7.9 67
PDB header:ribosome
Chain: J: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
84d2bh1x1



not modelled 7.9 20
Fold:Alpha-lytic protease prodomain-like
Superfamily:EspE N-terminal domain-like
Family:GSPII protein E N-terminal domain-like
85c2bh1Y_



not modelled 7.9 20
PDB header:transport protein
Chain: Y: PDB Molecule:general secretion pathway protein e,;
PDBTitle: x-ray structure of the general secretion pathway complex of2 the n-terminal domain of epse and the cytosolic domain of3 epsl of vibrio cholerae
86c4pw2A_



not modelled 7.8 19
PDB header:isomerase
Chain: A: PDB Molecule:d-glucuronyl c5 epimerase b;
PDBTitle: crystal structure of d-glucuronyl c5 epimerase
87c2lonA_



not modelled 7.8 9
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
88c1zzaA_



not modelled 7.4 14
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
89c3llbA_



not modelled 7.3 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1
90d2a65a1



not modelled 7.2 18
Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
91c1hgvA_



not modelled 7.2 26
PDB header:virus
Chain: A: PDB Molecule:ph75 inovirus major coat protein;
PDBTitle: filamentous bacteriophage ph75
92d1fftb2



not modelled 7.2 12
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
93c4qk0C_



not modelled 7.1 23
PDB header:hydrolase
Chain: C: PDB Molecule:gh127 beta-l-arabinofuranoside;
PDBTitle: crystal structure of ara127n-se, a gh127 beta-l-arabinofuranosidase2 from geobacillus stearothermophilus t6
94d1j7db_



not modelled 7.0 14
Fold:UBC-like
Superfamily:UBC-like
Family:UBC-related
95c2o014_



not modelled 6.9 14
PDB header:photosynthesis
Chain: 4: PDB Molecule:psi light-harvesting antenna chlorophyll a/b-binding
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
96c3k11A_



not modelled 6.9 3
PDB header:hydrolase
Chain: A: PDB Molecule:putative glycosyl hydrolase;
PDBTitle: crystal structure of putative glycosyl hydrolase (np_813087.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.80 a resolution
97c1hgzA_



not modelled 6.8 29
PDB header:virus
Chain: A: PDB Molecule:ph75 inovirus major coat protein;
PDBTitle: filamentous bacteriophage ph75
98c2kcoA_



not modelled 6.8 50
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: solution nmr structure of ribosomal protein sso0164 from2 sulfolobus solfataricus. northeast structural genomics3 consortium (nesg) target sst4.
99c2oarA_



not modelled 6.6 11
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)

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Transmembrane helix prediction 

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