Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1625c_(cya)_1826621_1827952
DateFri Aug 2 13:30:21 BST 2019
Unique Job ID4ee589b5a66987da
SequenceVAARKCGAPP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:125.414 Y:61.848 Z:87.123
Model (left) based on template c6r4oA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:adenylate cyclase 9;
PDBTitle: structure of a truncated adenylyl cyclase bound to mant-gtp, forskolin2 and an activated stimulatory galphas protein
Confidence and coverage
Confidence:100.0% Coverage: 88%
389 residues ( 88% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6r4oA_
100.0 21
PDB header:membrane protein
Chain: A: PDB Molecule:adenylate cyclase 9;
PDBTitle: structure of a truncated adenylyl cyclase bound to mant-gtp, forskolin2 and an activated stimulatory galphas protein
2c6fhtB_
100.0 24
PDB header:lyase
Chain: B: PDB Molecule:bacteriophytochrome,adenylate cyclase;
PDBTitle: crystal structure of an artificial phytochrome regulated2 adenylate/guanylate cyclase in its dark adapted pr form
3c6r4pA_
100.0 36
PDB header:membrane protein
Chain: A: PDB Molecule:adenylate cyclase 9;
PDBTitle: structure of a soluble domain of adenylyl cyclase bound to an2 activated stimulatory g protein
4c5o5kC_
100.0 85
PDB header:membrane protein
Chain: C: PDB Molecule:adenylate cyclase;
PDBTitle: x-ray structure of a bacterial adenylyl cyclase soluble domain
5c4yusA_
100.0 25
PDB header:lyase
Chain: A: PDB Molecule:family 3 adenylate cyclase;
PDBTitle: crystal structure of photoactivated adenylyl cyclase of a2 cyanobacteriaoscillatoria acuminata in hexagonal form
6c5nbyA_
100.0 20
PDB header:lyase
Chain: A: PDB Molecule:beta subunit of photoactivated adenylyl cyclase;
PDBTitle: structure of a bacterial light-regulated adenylyl cylcase
7c4cllA_
100.0 20
PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase type 10;
PDBTitle: crystal structure of human soluble adenylyl cyclase in complex with2 bicarbonate
8c1cjkA_
100.0 33
PDB header:lyase/lyase/signaling protein
Chain: A: PDB Molecule:adenylate cyclase, type v;
PDBTitle: complex of gs-alpha with the catalytic domains of mammalian adenylyl2 cyclase: complex with adenosine 5'-(alpha thio)-triphosphate (rp),3 mg, and mn
9d1azsa_
100.0 33
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
10d1azsb_
100.0 37
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
11c1y10C_
100.0 27
PDB header:lyase
Chain: C: PDB Molecule:hypothetical protein rv1264/mt1302;
PDBTitle: mycobacterial adenylyl cyclase rv1264, holoenzyme, inhibited state
12c2w01C_
100.0 24
PDB header:lyase
Chain: C: PDB Molecule:adenylate cyclase;
PDBTitle: crystal structure of the guanylyl cyclase cya2
13c1yk9A_
100.0 98
PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase;
PDBTitle: crystal structure of a mutant form of the mycobacterial2 adenylyl cyclase rv1625c
14c1wc6B_
100.0 25
PDB header:lyase
Chain: B: PDB Molecule:adenylate cyclase;
PDBTitle: soluble adenylyl cyclase cyac from s. platensis in complex2 with rp-atpalphas in presence of bicarbonate
15d1wc1a_
100.0 25
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
16c3r5gB_
100.0 28
PDB header:lyase
Chain: B: PDB Molecule:cyab;
PDBTitle: crystal structure of the adenylyl cyclase cyab from p. aeruginosa
17c3uvjC_
100.0 32
PDB header:lyase
Chain: C: PDB Molecule:guanylate cyclase soluble subunit alpha-3;
PDBTitle: crystal structure of the catalytic domain of the heterodimeric human2 soluble guanylate cyclase 1.
18c6aoaA_
100.0 36
PDB header:lyase
Chain: A: PDB Molecule:bacterio-rhodopsin/guanylyl cyclase 1 fusion protein;
PDBTitle: monomeric crystal structure of the e497/c566d double mutant of the2 guanylyl cyclase domain of the rhogc fusion protein from the aquatic3 fungus blastocladiella emersonii
19d1fx2a_
100.0 22
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
20c2wz1B_
100.0 39
PDB header:lyase
Chain: B: PDB Molecule:guanylate cyclase soluble subunit beta-1;
PDBTitle: structure of the catalytic domain of human soluble guanylate cyclase 12 beta 3.
21d1fx4a_
not modelled 100.0 20
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:Adenylyl and guanylyl cyclase catalytic domain
22c3et6A_
not modelled 100.0 50
PDB header:lyase
Chain: A: PDB Molecule:soluble guanylyl cyclase beta;
PDBTitle: the crystal structure of the catalytic domain of a eukaryotic2 guanylate cyclase
23c3mr7B_
not modelled 99.9 27
PDB header:hydrolase
Chain: B: PDB Molecule:adenylate/guanylate cyclase/hydrolase, alpha/beta fold
PDBTitle: crystal structure of adenylate/guanylate cyclase/hydrolase from2 silicibacter pomeroyi
24c1ybuA_
not modelled 99.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:lipj;
PDBTitle: mycobacterium tuberculosis adenylyl cyclase rv1900c chd, in complex2 with a substrate analog.
25c4wp3E_
not modelled 99.9 21
PDB header:lyase
Chain: E: PDB Molecule:ma1120;
PDBTitle: crystal structure of adenylyl cyclase from mycobacterium avium ma11202 wild type
26c2qv6D_
not modelled 97.2 13
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase iii;
PDBTitle: gtp cyclohydrolase iii from m. jannaschii (mj0145)2 complexed with gtp and metal ions
27c3hlsE_
not modelled 96.3 15
PDB header:signaling protein
Chain: E: PDB Molecule:guanylate cyclase soluble subunit beta-1;
PDBTitle: crystal structure of the signaling helix coiled-coil doimain2 of the beta-1 subunit of the soluble guanylyl cyclase
28c3i5aA_
not modelled 94.9 12
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
29c3i5cA_
not modelled 94.4 15
PDB header:signaling protein
Chain: A: PDB Molecule:fusion of general control protein gcn4 and wspr response
PDBTitle: crystal structure of a fusion protein containing the leucine zipper of2 gcn4 and the ggdef domain of wspr from pseudomonas aeruginosa
30c5llxB_
not modelled 94.0 12
PDB header:transferase
Chain: B: PDB Molecule:diguanylate cyclase (ggdef) domain-containing protein;
PDBTitle: bacteriophytochrome activated diguanylyl cyclase from idiomarina2 species a28l with gtp bound
31c3breA_
not modelled 93.2 14
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
32c4zmuD_
not modelled 93.2 15
PDB header:lyase
Chain: D: PDB Molecule:diguanylate cyclase;
PDBTitle: dcsbis, a diguanylate cyclase from pseudomonas aeruginosa
33c4h54B_
not modelled 92.5 9
PDB header:transferase
Chain: B: PDB Molecule:diguanylate cyclase ydeh;
PDBTitle: crystal structure of the diguanylate cyclase dgcz
34c6d9mA_
not modelled 92.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:fusion protein of endolysin,response receiver sensor
PDBTitle: t4-lysozyme fusion to geobacter ggdef
35c1w25B_
not modelled 89.5 13
PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
36c3i5bA_
not modelled 89.1 16
PDB header:signaling protein
Chain: A: PDB Molecule:wspr response regulator;
PDBTitle: crystal structure of the isolated ggdef domain of wpsr from2 pseudomonas aeruginosa
37c3ezuA_
not modelled 87.4 16
PDB header:signaling protein
Chain: A: PDB Molecule:ggdef domain protein;
PDBTitle: crystal structure of multidomain protein of unknown function with2 ggdef-domain (np_951600.1) from geobacter sulfurreducens at 1.95 a3 resolution
38c5xgdA_
not modelled 84.9 11
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein pa0861;
PDBTitle: crystal structure of the pas-ggdef-eal domain of pa0861 from2 pseudomonas aeruginosa in complex with gtp
39c4ymeA_
not modelled 84.5 16
PDB header:lyase
Chain: A: PDB Molecule:sensory box/ggdef family protein;
PDBTitle: crystal structure of a sensory box/ggdef family protein (cc_0091) from2 caulobacter crescentus cb15 at 1.40 a resolution (psi community3 target, shapiro)
40c3ignA_
not modelled 82.0 8
PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase;
PDBTitle: crystal structure of the ggdef domain from marinobacter aquaeolei2 diguanylate cyclase complexed with c-di-gmp - northeast structural3 genomics consortium target mqr89a
41c4urgB_
not modelled 81.4 16
PDB header:lyase
Chain: B: PDB Molecule:diguanylate cyclase;
PDBTitle: crystal structure of ggdef domain from t.maritima (active-like dimer)
42c4dmzB_
not modelled 81.1 12
PDB header:nucleotide-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein peld;
PDBTitle: peld 156-455 from pseudomonas aeruginosa pa14, apo form
43c3hvwA_
not modelled 79.7 4
PDB header:lyase
Chain: A: PDB Molecule:diguanylate-cyclase (dgc);
PDBTitle: crystal structure of the ggdef domain of the pa2567 protein from2 pseudomonas aeruginosa, northeast structural genomics consortium3 target par365c
44c4wxoA_
not modelled 78.4 12
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: sadc (300-487) from pseudomonas aeruginosa pao1
45d1w25a3
not modelled 78.2 13
Fold:Ferredoxin-like
Superfamily:Nucleotide cyclase
Family:GGDEF domain
46c4iobA_
not modelled 78.1 18
PDB header:lyase
Chain: A: PDB Molecule:diguanylate cyclase tpbb;
PDBTitle: crystal structure of the ggdef domain of pa1120 (yfin or tpbb) from2 pseudomonas aeruginosa at 2.7 ang.
47c3mtkA_
not modelled 76.6 9
PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase/phosphodiesterase;
PDBTitle: x-ray structure of diguanylate cyclase/phosphodiesterase from2 caldicellulosiruptor saccharolyticus, northeast structural genomics3 consortium target clr27c
48c5euhA_
not modelled 75.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:putative ggdef domain membrane protein;
PDBTitle: crystal structure of the c-di-gmp-bound ggdef domain of p. fluorescens2 gcbc
49c5cupB_
not modelled 74.7 25
PDB header:transferase
Chain: B: PDB Molecule:phosphate propanoyltransferase;
PDBTitle: structure of rhodopseudomonas palustris pdul - phosphate bound form
50c3tvkA_
not modelled 74.1 9
PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase dgcz;
PDBTitle: diguanylate cyclase domain of dgcz
51c4w8yA_
not modelled 72.7 13
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr2;
PDBTitle: structure of full length cmr2 from pyrococcus furiosus (manganese2 bound form)
52c3ungC_
not modelled 72.4 11
PDB header:unknown function
Chain: C: PDB Molecule:cmr2dhd;
PDBTitle: structure of the cmr2 subunit of the crispr rna silencing complex
53c3hvaA_
not modelled 72.3 12
PDB header:transferase
Chain: A: PDB Molecule:protein fimx;
PDBTitle: crystal structure of fimx ggdef domain from pseudomonas aeruginosa
54c6eibC_
not modelled 71.6 16
PDB header:transferase
Chain: C: PDB Molecule:sensory box/ggdef family protein;
PDBTitle: structure of the active ggeef domain of a diguanylate cyclase from2 vibrio cholerae.
55c4zmmB_
not modelled 68.7 11
PDB header:transferase
Chain: B: PDB Molecule:diguanylate cyclase;
PDBTitle: ggdef domain of dcsbis complexed with c-di-gmp
56c4zvhB_
not modelled 68.0 18
PDB header:signaling protein
Chain: B: PDB Molecule:diguanylate cyclase dosc;
PDBTitle: crystal structure of ggdef domain of the e. coli dosc - form iv
57c5m3cB_
not modelled 63.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:diguanylate cyclase;
PDBTitle: structure of the hybrid domain (ggdef-eal) of pa0575 from pseudomonas2 aeruginosa pao1 at 2.8 ang. with gtp and ca2+ bound to the active3 site of the ggdef domain
58c6ifnA_
not modelled 57.9 15
PDB header:rna binding protein
Chain: A: PDB Molecule:type iii-a crispr-associated protein csm1;
PDBTitle: crystal structure of type iii-a crispr csm complex
59c3pjwA_
not modelled 55.2 8
PDB header:lyase
Chain: A: PDB Molecule:cyclic dimeric gmp binding protein;
PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23
60c3iclA_
not modelled 54.4 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:eal/ggdef domain protein;
PDBTitle: x-ray structure of protein (eal/ggdef domain protein) from2 m.capsulatus, northeast structural genomics consortium target mcr174c
61c2x5eA_
not modelled 53.0 20
PDB header:unknown function
Chain: A: PDB Molecule:upf0271 protein pa4511;
PDBTitle: crystal structure of the hypothetical protein pa4511 from2 pseudomonas aeruginosa
62d1v6ta_
not modelled 52.4 22
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
63c4euvA_
not modelled 48.8 11
PDB header:signaling protein
Chain: A: PDB Molecule:peld;
PDBTitle: crystal structure of peld 158-ct from pseudomonas aeruginosa pao1, in2 complex with c-di-gmp, form 1
64d2dfaa1
not modelled 48.5 24
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
65c3qyyB_
not modelled 48.5 12
PDB header:signaling protein/inhibitor
Chain: B: PDB Molecule:response regulator;
PDBTitle: a novel interaction mode between a microbial ggdef domain and the bis-2 (3, 5 )-cyclic di-gmp
66c4rnhA_
not modelled 24.4 13
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:motility regulator;
PDBTitle: pamora tandem diguanylate cyclase - phosphodiesterase, c-di-gmp2 complex
67c5buzC_
not modelled 19.0 19
PDB header:transport protein
Chain: C: PDB Molecule:snap receptor-like protein;
PDBTitle: crystal structure of a complex between the snare vam3 and the hops2 vps33-vps16 subcomplex from chaetomium thermophilum
68d1m9dc_
not modelled 18.1 28
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
69c2xgvA_
not modelled 17.9 11
PDB header:viral protein
Chain: A: PDB Molecule:psiv capsid n-terminal domain;
PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik)
70c5t4oA_
not modelled 17.8 11
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: autoinhibited e. coli atp synthase state 1
71c2pjhB_
not modelled 17.3 13
PDB header:transport protein
Chain: B: PDB Molecule:transitional endoplasmic reticulum atpase;
PDBTitle: strctural model of the p97 n domain- npl4 ubd complex
72d2eiaa2
not modelled 17.1 22
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
73d1m9fd_
not modelled 17.0 28
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
74d2pxrc1
not modelled 16.3 28
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
75c2wlvA_
not modelled 16.1 22
PDB header:viral protein
Chain: A: PDB Molecule:gag polyprotein;
PDBTitle: structure of the n-terminal capsid domain of hiv-2
76c2n5lA_
not modelled 15.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: regnase-1 c-terminal domain
77c4axkB_
not modelled 15.6 16
PDB header:isomerase
Chain: B: PDB Molecule:1-(5-phosphoribosyl)-5-((5'-phosphoribosylamino)
PDBTitle: crystal structure of subhisa from the thermophile corynebacterium2 efficiens
78c4rrfD_
not modelled 15.0 19
PDB header:ligase
Chain: D: PDB Molecule:threonine--trna ligase;
PDBTitle: editing domain of threonyl-trna synthetase from methanococcus2 jannaschii with l-ser3aa
79c5fa0B_
not modelled 14.1 18
PDB header:transferase
Chain: B: PDB Molecule:putative n-acetyl glucosaminyl transferase;
PDBTitle: the structure of the beta-3-deoxy-d-manno-oct-2-ulosonic acid2 transferase domain from wbbb
80c6fkhA_
not modelled 13.9 9
PDB header:membrane protein
Chain: A: PDB Molecule:atp synthase subunit alpha, chloroplastic;
PDBTitle: chloroplast f1fo conformation 2
81c2kjwA_
not modelled 13.3 18
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s6;
PDBTitle: solution structure and backbone dynamics of the permutant p54-55
82c1avoA_
not modelled 13.3 33
PDB header:proteasome activator
Chain: A: PDB Molecule:11s regulator;
PDBTitle: proteasome activator reg(alpha)
83c5ggoB_
not modelled 13.0 24
PDB header:sugar binding protein
Chain: B: PDB Molecule:protein o-linked-mannose beta-1,2-n-
PDBTitle: crystal structure of n-terminal domain of human protein o-mannose2 beta-1,2-n-acetylglucosaminyltransferase in complex with galnac-3 beta1,3-glcnac-beta-pnp
84c2hl2A_
not modelled 12.7 19
PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase;
PDBTitle: crystal structure of the editing domain of threonyl-trna2 synthetase from pyrococcus abyssi in complex with an3 analog of seryladenylate
85c3dcaC_
not modelled 12.4 13
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:rpa0582;
PDBTitle: crystal structure of the rpa0582- protein of unknown2 function from rhodopseudomonas palustris- a structural3 genomics target
86c6iqwA_
not modelled 12.3 16
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:csm1;
PDBTitle: cryo-em structure of csm effector complex
87c2y0fD_
not modelled 12.1 21
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27
88c3a6mB_
not modelled 11.8 14
PDB header:chaperone
Chain: B: PDB Molecule:protein grpe;
PDBTitle: crystal structure of grpe from thermus thermophilus hb8
89c3nvbA_
not modelled 11.5 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate
90c2xgyA_
not modelled 11.1 17
PDB header:viral protein/isomerase
Chain: A: PDB Molecule:relik capsid n-terminal domain;
PDBTitle: complex of rabbit endogenous lentivirus (relik)capsid with2 cyclophilin a
91d1v4ea_
not modelled 11.1 16
Fold:Terpenoid synthases
Superfamily:Terpenoid synthases
Family:Isoprenyl diphosphate synthases
92c5dn6A_
not modelled 11.1 15
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: atp synthase from paracoccus denitrificans
93c4aniA_
not modelled 10.8 13
PDB header:chaperone
Chain: A: PDB Molecule:protein grpe;
PDBTitle: structural basis for the intermolecular communication between2 dnak and grpe in the dnak chaperone system from3 geobacillus kaustophilus hta426
94c4tt1A_
not modelled 10.7 25
PDB header:hydrolase
Chain: A: PDB Molecule:deneddylase;
PDBTitle: crystal structure of fragment 1600-1733 of hsv1 ul36, native
95d2gsva1
not modelled 10.6 16
Fold:Open three-helical up-and-down bundle
Superfamily:YvfG-like
Family:YvfG-like
96c2vfwB_
not modelled 10.5 13
PDB header:transferase
Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase;
PDBTitle: rv1086 native
97d2crua1
not modelled 10.2 15
Fold:RuvA C-terminal domain-like
Superfamily:Double-stranded DNA-binding domain
Family:Double-stranded DNA-binding domain
98c1l6nA_
not modelled 10.2 28
PDB header:viral protein
Chain: A: PDB Molecule:gag polyprotein;
PDBTitle: structure of the n-terminal 283-residue fragment of the hiv-2 1 gag polyprotein
99d1k8ba_
not modelled 10.1 25
Fold:Ribosome binding domain-like
Superfamily:Translation initiation factor 2 beta, aIF2beta, N-terminal domain
Family:Translation initiation factor 2 beta, aIF2beta, N-terminal domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below