Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1628c_(-)_1830077_1830568
DateFri Aug 2 13:30:22 BST 2019
Unique Job IDbe768d4c9e77010c
SequenceVPEVTREEPA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.468 Y:47.895 Z:56.618
Model (left) based on template c5mg5W_
Top template information
PDB header:transferase
Chain: W: PDB Molecule:2,4-diacetylphloroglucinol biosynthesis protein;
PDBTitle: a multi-component acyltransferase phlabc from pseudomonas protegens2 soaked with the monoacetylphloroglucinol (mapg)
Confidence and coverage
Confidence:100.0% Coverage: 85%
139 residues ( 85% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5mg5W_



100.0 22
PDB header:transferase
Chain: W: PDB Molecule:2,4-diacetylphloroglucinol biosynthesis protein;
PDBTitle: a multi-component acyltransferase phlabc from pseudomonas protegens2 soaked with the monoacetylphloroglucinol (mapg)
2c6et9H_



100.0 31
PDB header:transferase
Chain: H: PDB Molecule:pfam duf35;
PDBTitle: structure of the acetoacetyl-coa-thiolase/hmg-coa-synthase complex2 from methanothermococcus thermolithotrophicus at 2.75 a
3c6ok1B_



100.0 28
PDB header:transport protein
Chain: B: PDB Molecule:chsh2(duf35);
PDBTitle: ltp2-chsh2(duf35) aldolase
4d2gnra1



100.0 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:SSO2064-like
5c2kdxA_



90.9 19
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
6c3a44D_



81.4 44
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
7c2kn9A_



75.1 29
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a
8c4u3eA_



74.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:ribonucleoside triphosphate reductase;
PDBTitle: anaerobic ribonucleotide reductase
9c5ijlA_



73.9 41
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii large subunit;
PDBTitle: d-family dna polymerase - dp2 subunit (catalytic subunit)
10d1lkoa2



70.7 28
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
11d2gmga1



67.5 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
12c1dvbA_



66.2 31
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
13c2lcqA_



66.0 45
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
14c6hmsB_



63.9 41
PDB header:replication
Chain: B: PDB Molecule:dna polymerase ii large subunit,dna polymerase ii large
PDBTitle: cryo-em map of dna polymerase d from pyrococcus abyssi in complex with2 dna
15d1s24a_



62.9 28
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
16c1s24A_



62.9 28
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin 2;
PDBTitle: rubredoxin domain ii from pseudomonas oleovorans
17c6g5iy_



62.6 22
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
18c3j3v0_



62.4 45
PDB header:ribosome
Chain: 0: PDB Molecule:50s ribosomal protein l32;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
19d2zjrz1



61.8 40
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
20d6rxna_



61.0 31
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
21d2ayja1



not modelled 58.2 29
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L40e
22c2ms3A_



not modelled 57.5 25
PDB header:electron transport
Chain: A: PDB Molecule:anaerobic nitric oxide reductase flavorubredoxin;
PDBTitle: the nmr structure of the rubredoxin domain of the no reductase2 flavorubredoxin from escherichia coli
23c4ce45_



not modelled 57.1 29
PDB header:ribosome
Chain: 5: PDB Molecule:mrpl32;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
24d1iu5a_



not modelled 57.0 38
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
25d2fiya1



not modelled 56.9 19
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
26d1brfa_



not modelled 56.4 33
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
27c2v3bB_



not modelled 56.0 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:rubredoxin 2;
PDBTitle: crystal structure of the electron transfer complex rubredoxin -2 rubredoxin reductase from pseudomonas aeruginosa.
28c2m4yA_



not modelled 54.3 22
PDB header:electron transport
Chain: A: PDB Molecule:rubredoxin;
PDBTitle: rubredoxin type protein from mycobacterium ulcerans
29d1dx8a_



not modelled 53.6 36
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
30c2odxA_



not modelled 53.2 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c oxidase polypeptide iv;
PDBTitle: solution structure of zn(ii)cox4
31c3jc76_



not modelled 53.2 23
PDB header:hydrolase
Chain: 6: PDB Molecule:dna replication licensing factor mcm6;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
32c4v195_



not modelled 53.1 30
PDB header:ribosome
Chain: 5: PDB Molecule:mitoribosomal protein bl32m, mrpl32;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
33c6hu9p_



not modelled 52.7 22
PDB header:oxidoreductase/electron transport
Chain: P: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
34d1h7va_



not modelled 52.5 40
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
35c3wqyB_



not modelled 52.2 42
PDB header:ligase/rna
Chain: B: PDB Molecule:alanine--trna ligase;
PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna synthetase in2 complex with wild-type trna(ala) having g3.u70
36d1qcva_



not modelled 51.0 26
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
37d1iroa_



not modelled 50.8 37
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
38d4rxna_



not modelled 49.0 39
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
39d2j0151



not modelled 48.8 40
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
40d2rdva_



not modelled 48.2 34
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
41c1ltlE_



not modelled 47.1 18
PDB header:replication
Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54);
PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum
42d1hk8a_



not modelled 47.0 27
Fold:PFL-like glycyl radical enzymes
Superfamily:PFL-like glycyl radical enzymes
Family:Class III anaerobic ribonucleotide reductase NRDD subunit
43c1hk8A_



not modelled 47.0 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase;
PDBTitle: structural basis for allosteric substrate specificity regulation in2 class iii ribonucleotide reductases: nrdd in complex with dgtp
44d1ltla_



not modelled 46.8 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA replication initiator (cdc21/cdc54) N-terminal domain
45d1rb9a_



not modelled 46.7 34
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
46d2ey4e1



not modelled 45.2 50
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
47d2apob1



not modelled 44.7 52
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
48c1vw4W_



not modelled 43.4 40
PDB header:ribosome
Chain: W: PDB Molecule:54s ribosomal protein l32, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
49c2y69S_



not modelled 42.5 50
PDB header:electron transport
Chain: S: PDB Molecule:cytochrome c oxidase subunit 5b;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
50c2e9hA_



not modelled 42.0 24
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: solution structure of the eif-5_eif-2b domain from human2 eukaryotic translation initiation factor 5
51d1k81a_



not modelled 41.5 24
Fold:Zinc-binding domain of translation initiation factor 2 beta
Superfamily:Zinc-binding domain of translation initiation factor 2 beta
Family:Zinc-binding domain of translation initiation factor 2 beta
52d2cona1



not modelled 41.3 22
Fold:Rubredoxin-like
Superfamily:NOB1 zinc finger-like
Family:NOB1 zinc finger-like
53d1b8ta1



not modelled 40.7 30
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
54c2gb5B_



not modelled 39.2 24
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
55c3ja85_



not modelled 38.7 19
PDB header:hydrolase
Chain: 5: PDB Molecule:minichromosome maintenance 5;
PDBTitle: cryo-em structure of the mcm2-7 double hexamer
56d2dsxa1



not modelled 37.5 29
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
57d2qam01



not modelled 37.4 16
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L32p
58c3ja86_



not modelled 37.0 23
PDB header:hydrolase
Chain: 6: PDB Molecule:minichromosome maintenance 6;
PDBTitle: cryo-em structure of the mcm2-7 double hexamer
59c1yuzB_



not modelled 34.0 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
60c2ztgA_



not modelled 32.7 33
PDB header:ligase
Chain: A: PDB Molecule:alanyl-trna synthetase;
PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna2 synthetase lacking the c-terminal dimerization domain in3 complex with ala-sa
61c2zzfA_



not modelled 32.2 33
PDB header:ligase
Chain: A: PDB Molecule:alanyl-trna synthetase;
PDBTitle: crystal structure of alanyl-trna synthetase without oligomerization2 domain
62c2hr5B_



not modelled 31.7 28
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
63c2ysoA_



not modelled 31.0 40
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 95 homolog;
PDBTitle: solution structure of the c2h2 type zinc finger (region 656-2 688) of human zinc finger protein 95 homolog
64d1v54f_



not modelled 30.7 19
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Cytochrome c oxidase Subunit F
65d1kn3a_



not modelled 30.4 15
Fold:PEBP-like
Superfamily:PEBP-like
Family:Phosphatidylethanolamine binding protein
66d1hh2p1



not modelled 30.3 12
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
67d2avue1



not modelled 29.7 16
Fold:FlhC-like
Superfamily:FlhC-like
Family:FlhC-like
68c3lpeF_



not modelled 29.6 36
PDB header:transferase
Chain: F: PDB Molecule:dna-directed rna polymerase subunit e'';
PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii
69d1vqo11



not modelled 28.5 26
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein L37e
70c2lk1A_



not modelled 28.3 33
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5
71c2lk0A_



not modelled 28.3 33
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 5;
PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5
72d2qyqa1



not modelled 27.9 13
Fold:PEBP-like
Superfamily:PEBP-like
Family:Phosphatidylethanolamine binding protein
73d1yuza2



not modelled 27.6 23
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
74c6hv97_



not modelled 26.9 25
PDB header:dna binding protein
Chain: 7: PDB Molecule:dna replication licensing factor mcm7;
PDBTitle: s. cerevisiae cmg-pol epsilon-dna
75c3j21e_



not modelled 26.9 33
PDB header:ribosome
Chain: E: PDB Molecule:50s ribosomal protein l5p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
76c2l55A_



not modelled 26.8 13
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
77c4a1dK_



not modelled 26.5 38
PDB header:ribosome
Chain: K: PDB Molecule:ubiquitin-60s ribosomal protein l40;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4.
78c2avuF_



not modelled 25.9 16
PDB header:transcription activator
Chain: F: PDB Molecule:flagellar transcriptional activator flhc;
PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription
79d1nnqa2



not modelled 25.3 18
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
80c2jufA_



not modelled 24.3 27
PDB header:gene regulation
Chain: A: PDB Molecule:p53-associated parkin-like cytoplasmic protein;
PDBTitle: nmr solution structure of parc cph domain. nesg target2 hr3443b/sgc-toronto
81d1z8ga2



not modelled 24.0 25
Fold:SRCR-like
Superfamily:SRCR-like
Family:Hepsin, N-terminal domain
82c2vl6C_



not modelled 23.7 21
PDB header:dna binding protein
Chain: C: PDB Molecule:minichromosome maintenance protein mcm;
PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain
83d2jnga1



not modelled 23.3 27
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:CPH domain
84c3jc73_



not modelled 23.2 15
PDB header:hydrolase
Chain: 3: PDB Molecule:dna replication licensing factor mcm3;
PDBTitle: structure of the eukaryotic replicative cmg helicase and pumpjack2 motion
85c5tvdA_



not modelled 22.8 10
PDB header:unknown function
Chain: A: PDB Molecule:tm16;
PDBTitle: crystal structure of tm16
86d1b8ta3



not modelled 22.4 42
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
87c5vbnB_



not modelled 22.2 18
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of human dna polymerase epsilon b-subunit in complex2 with c-terminal domain of catalytic subunit
88c2nchA_



not modelled 22.0 13
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: solution structure of translation initiation factor if1 from wolbachia2 endosymbiont strain trs of brugia malayi
89c3j39m_



not modelled 21.8 38
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l14;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
90c3ndjA_



not modelled 21.5 22
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: x-ray structure of a c-3'-methyltransferase in complex with s-2 adenosyl-l-homocysteine and sugar product
91d1wjra_



not modelled 21.5 29
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:MBT repeat
92d1p3ja2



not modelled 21.5 36
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
93d1s3ga2



not modelled 20.5 36
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
94d1zina2



not modelled 20.2 36
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
95c3vpbF_



not modelled 19.7 38
PDB header:ligase
Chain: F: PDB Molecule:alpha-aminoadipate carrier protein lysw;
PDBTitle: argx from sulfolobus tokodaii complexed with2 lysw/glu/adp/mg/zn/sulfate
96c5ij4A_



not modelled 19.6 32
PDB header:metal binding protein
Chain: A: PDB Molecule:cdc48-associated ubiquitin-like/zinc finger protein 1;
PDBTitle: solution structure of an1-type zinc finger domain from cuz1 (cdc482 associated ubiquitin-like/zinc-finger protein-1)
97c4tkoB_



not modelled 18.9 18
PDB header:membrane protein
Chain: B: PDB Molecule:emra;
PDBTitle: structure of the periplasmic adaptor protein emra
98c6hv96_



not modelled 18.6 18
PDB header:dna binding protein
Chain: 6: PDB Molecule:dna replication licensing factor mcm6;
PDBTitle: s. cerevisiae cmg-pol epsilon-dna
99c2ytvA_



not modelled 18.4 15
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein)

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