Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1630_(rpsA)_1833549_1834994
DateFri Aug 2 13:30:22 BST 2019
Unique Job IDf0c0697c2064d106
SequenceMPSPTVTSPQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.896 Y:56.177 Z:69.250
Model (left) based on template c3go5A_
Top template information
PDB header:gene regulation
Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains;
PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution
Confidence and coverage
Confidence:100.0% Coverage: 46%
219 residues ( 46% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
412 residues ( 86%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3go5A_
100.0 22
PDB header:gene regulation
Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains;
PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution
2c4q7jD_
100.0 41
PDB header:translation/transferase
Chain: D: PDB Molecule:30s ribosomal protein s1;
PDBTitle: complex structure of viral rna polymerase
3c4nnkA_
100.0 100
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: structural basis for targeting the ribosomal protein s1 of2 mycobacterium tuberculosis by pyrazinamide
4c3j81j_
100.0 24
PDB header:ribosome
Chain: J: PDB Molecule:us4;
PDBTitle: cryoem structure of a partial yeast 48s preinitiation complex
5c1kl9A_
99.9 19
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 2 subunit 1;
PDBTitle: crystal structure of the n-terminal segment of human eukaryotic2 initiation factor 2alpha
6c5x8r8_
99.9 30
PDB header:ribosome
Chain: 8: PDB Molecule:30s ribosomal protein s1, chloroplastic;
PDBTitle: structure of the 30s small subunit of chloroplast ribosome from2 spinach
7c2cqoA_
99.9 28
PDB header:ribosome
Chain: A: PDB Molecule:nucleolar protein of 40 kda;
PDBTitle: solution structure of the s1 rna binding domain of human2 hypothetical protein flj11067
8c1q46A_
99.9 24
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 alpha subunit;
PDBTitle: crystal structure of the eif2 alpha subunit from2 saccharomyces cerevisia
9c2khiA_
99.9 45
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1
10c2k4kA_
99.9 27
PDB header:rna binding protein
Chain: A: PDB Molecule:general stress protein 13;
PDBTitle: solution structure of gsp13 from bacillus subtilis
11c5xq5A_
99.9 38
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 5 of the e. coli ribosomal protein s1
12c2khjA_
99.9 34
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1
13c1q8kA_
99.9 22
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 2
PDBTitle: solution structure of alpha subunit of human eif2
14c6qh2A_
99.9 41
PDB header:signaling protein
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: solution nmr ensemble for a chimeric kh-s1 domain construct of2 exosomal polynucleotide phosphrylase at 298k compiled using the3 comand method
15c1yz6A_
99.8 29
PDB header:translation
Chain: A: PDB Molecule:probable translation initiation factor 2 alpha
PDBTitle: crystal structure of intact alpha subunit of aif2 from2 pyrococcus abyssi
16c2oceA_
99.8 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa5201;
PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa
17d1q46a2
99.8 31
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
18c2eqsA_
99.8 40
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dhx8;
PDBTitle: solution structure of the s1 rna binding domain of human2 atp-dependent rna helicase dhx8
19c2ahoB_
99.8 17
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor 2 alpha subunit;
PDBTitle: structure of the archaeal initiation factor eif2 alpha-gamma2 heterodimer from sulfolobus solfataricus complexed with gdpnp
20c4aimA_
99.8 35
PDB header:transferase/peptide
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rnase e2 recognition peptide
21d1go3e1
not modelled 99.8 26
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
22c5lm7A_
not modelled 99.8 16
PDB header:transcription
Chain: A: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: crystal structure of the lambda n-nus factor complex
23d3bzka4
not modelled 99.8 36
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
24d1sroa_
not modelled 99.8 43
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
25c2k52A_
not modelled 99.8 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mj1198;
PDBTitle: structure of uncharacterized protein mj1198 from2 methanocaldococcus jannaschii. northeast structural3 genomics target mjr117b
26c1hh2P_
not modelled 99.8 14
PDB header:transcription regulation
Chain: P: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima
27c2mflA_
not modelled 99.8 24
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: domain 2 of e. coli ribosomal protein s1
28c3psiA_
not modelled 99.8 21
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt6;
PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(239-1451)
29d2ba0a1
not modelled 99.8 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
30c1l2fA_
not modelled 99.8 14
PDB header:transcription
Chain: A: PDB Molecule:n utilization substance protein a;
PDBTitle: crystal structure of nusa from thermotoga maritima: a2 structure-based role of the n-terminal domain
31d1kl9a2
not modelled 99.8 33
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
32d1wi5a_
not modelled 99.8 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
33c6gmhM_
not modelled 99.8 24
PDB header:transcription
Chain: M: PDB Molecule:transcription elongation factor spt6,transcription
PDBTitle: structure of activated transcription complex pol ii-dsif-paf-spt6
34c2mfiA_
not modelled 99.7 18
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s1;
PDBTitle: domain 1 of e. coli ribosomal protein s1
35d2ahob2
not modelled 99.7 25
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
36d2z0sa1
not modelled 99.7 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
37c2z0sA_
not modelled 99.7 15
PDB header:rna binding protein
Chain: A: PDB Molecule:probable exosome complex rna-binding protein 1;
PDBTitle: crystal structure of putative exosome complex rna-binding2 protein
38d2je6i1
not modelled 99.7 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
39d1y14b1
not modelled 99.6 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
40d2nn6h1
not modelled 99.6 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
41c6flqF_
not modelled 99.5 18
PDB header:transcription
Chain: F: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: cryoem structure of e.coli rna polymerase paused elongation complex2 bound to nusa
42c2ba0A_
not modelled 99.5 19
PDB header:rna binding protein
Chain: A: PDB Molecule:archaeal exosome rna binding protein rrp4;
PDBTitle: archaeal exosome core
43d1hh2p1
not modelled 99.5 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
44d2nn6i1
not modelled 99.4 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
45c2je6I_
not modelled 99.4 20
PDB header:hydrolase
Chain: I: PDB Molecule:exosome complex rna-binding protein 1;
PDBTitle: structure of a 9-subunit archaeal exosome
46c1go3E_
not modelled 99.4 26
PDB header:transferase
Chain: E: PDB Molecule:dna-directed rna polymerase subunit e;
PDBTitle: structure of an archeal homolog of the eukaryotic rna polymerase ii2 rpb4/rpb7 complex
47d2c35b1
not modelled 99.4 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
48c2bh8B_
not modelled 99.4 24
PDB header:transcription
Chain: B: PDB Molecule:1b11;
PDBTitle: combinatorial protein 1b11
49c2pmzE_
not modelled 99.3 29
PDB header:translation, transferase
Chain: E: PDB Molecule:dna-directed rna polymerase subunit e;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
50c4qiwE_
not modelled 99.2 29
PDB header:transcription
Chain: E: PDB Molecule:dna-directed rna polymerase, subunit e';
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
51c5x50G_
not modelled 99.2 21
PDB header:transferase
Chain: G: PDB Molecule:rna polymerase ii subunit;
PDBTitle: rna polymerase ii from komagataella pastoris (type-2 crystal)
52d1smxa_
not modelled 99.2 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
53c2ba1B_
not modelled 99.2 27
PDB header:rna binding protein
Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4;
PDBTitle: archaeal exosome core
54c2c35F_
not modelled 99.2 15
PDB header:transferase
Chain: F: PDB Molecule:dna-directed rna polymerase ii 19 kda polypeptide;
PDBTitle: subunits rpb4 and rpb7 of human rna polymerase ii
55c5xguB_
not modelled 99.2 33
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease r;
PDBTitle: escherichia coli. rnase r
56c2nn6I_
not modelled 99.2 20
PDB header:hydrolase/transferase
Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
57c2b8kG_
not modelled 99.1 18
PDB header:transferase
Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kda polypeptide;
PDBTitle: 12-subunit rna polymerase ii
58c4toiA_
not modelled 99.1 32
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s2,ribosomal protein s1;
PDBTitle: crystal structure of e.coli ribosomal protein s2 in complex with n-2 terminal domain of s1
59c3h0gS_
not modelled 99.1 18
PDB header:transcription
Chain: S: PDB Molecule:dna-directed rna polymerase ii subunit rpb7;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
60c4nbqB_
not modelled 99.0 33
PDB header:transferase
Chain: B: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: structure of the polynucleotide phosphorylase (cbu_0852) from coxiella2 burnetii
61c2ix1A_
not modelled 98.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:exoribonuclease 2;
PDBTitle: rnase ii d209n mutant
62c1nt9G_
not modelled 98.8 17
PDB header:transcription, transferase
Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kd polypeptide;
PDBTitle: complete 12-subunit rna polymerase ii
63c4mtnA_
not modelled 98.8 25
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription termination factor nusa;
PDBTitle: crystal structure of transcription termination factor nusa from2 planctomyces limnophilus dsm 3776
64c5c0wJ_
not modelled 98.5 31
PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease dis3;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
65c2wp8J_
not modelled 98.5 28
PDB header:hydrolase
Chain: J: PDB Molecule:exosome complex exonuclease dis3;
PDBTitle: yeast rrp44 nuclease
66c2asbA_
not modelled 98.5 31
PDB header:transcription/rna
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: structure of a mycobacterium tuberculosis nusa-rna complex
67c2ckzB_
not modelled 98.5 11
PDB header:transferase
Chain: B: PDB Molecule:dna-directed rna polymerase iii 25 kd polypeptide;
PDBTitle: x-ray structure of rna polymerase iii subcomplex c17-c25.
68d2asba1
not modelled 98.5 34
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
69c4pmwB_
not modelled 98.4 21
PDB header:hydrolase/rna
Chain: B: PDB Molecule:dis3-like exonuclease 2;
PDBTitle: structure of mouse dis3l2 in complex with oligou rna substrate
70c4oxpA_
not modelled 98.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease e;
PDBTitle: x-ray crystal structure of the s1 and 5'-sensor domains of rnase e2 from caulobacter crescentus
71c4ifdH_
not modelled 98.3 24
PDB header:hydrolase/rna
Chain: H: PDB Molecule:exosome complex component rrp4;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
72c4ifdI_
not modelled 98.2 21
PDB header:hydrolase/rna
Chain: I: PDB Molecule:exosome complex component csl4;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
73c2vnuD_
not modelled 98.2 30
PDB header:hydrolase/rna
Chain: D: PDB Molecule:exosome complex exonuclease rrp44;
PDBTitle: crystal structure of sc rrp44
74c6d6rK_
not modelled 98.2 23
PDB header:hydrolase
Chain: K: PDB Molecule:exosome complex exonuclease rrp44;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
75d2nn6g1
not modelled 98.2 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
76c6d6rH_
not modelled 98.1 20
PDB header:hydrolase
Chain: H: PDB Molecule:exosome complex component rrp4;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
77c3ayhB_
not modelled 98.1 16
PDB header:transcription
Chain: B: PDB Molecule:dna-directed rna polymerase iii subunit rpc8;
PDBTitle: crystal structure of the c17/25 subcomplex from s. pombe rna2 polymerase iii
78c2nn6H_
not modelled 98.1 20
PDB header:hydrolase/transferase
Chain: H: PDB Molecule:exosome complex exonuclease rrp4;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
79c4ifdG_
not modelled 98.0 22
PDB header:hydrolase/rna
Chain: G: PDB Molecule:exosome complex component rrp40;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
80c2r7fA_
not modelled 97.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease ii family protein;
PDBTitle: crystal structure of ribonuclease ii family protein from deinococcus2 radiodurans, hexagonal crystal form. northeast structural genomics3 target drr63
81c2nn6G_
not modelled 97.9 14
PDB header:hydrolase/transferase
Chain: G: PDB Molecule:exosome complex exonuclease rrp40;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
82c2c4rL_
not modelled 97.8 25
PDB header:hydrolase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: catalytic domain of e. coli rnase e
83c1k0rB_
not modelled 97.8 31
PDB header:transcription
Chain: B: PDB Molecule:nusa;
PDBTitle: crystal structure of mycobacterium tuberculosis nusa
84d2ja9a1
not modelled 97.7 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
85c2ja9A_
not modelled 97.7 22
PDB header:rna-binding protein
Chain: A: PDB Molecule:exosome complex exonuclease rrp40;
PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40
86c2rf4A_
not modelled 97.6 13
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa4;
PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43
87c1e3pA_
not modelled 97.4 39
PDB header:polyribonucleotide transferase
Chain: A: PDB Molecule:guanosine pentaphosphate synthetase;
PDBTitle: tungstate derivative of streptomyces antibioticus pnpase/2 gpsi enzyme
88c6j9eF_
not modelled 97.1 18
PDB header:transcription
Chain: F: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: cryo-em structure of xanthomonos oryzae transcription elongation2 complex with nusa and the bacteriophage protein p7
89d2ix0a3
not modelled 96.7 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
90c5aj3f_
not modelled 96.6 25
PDB header:ribosome
Chain: F: PDB Molecule:mitoribosomal protein bs6m, mrps6;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
91c3i4oA_
not modelled 95.7 31
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis
92c4ql5A_
not modelled 95.5 32
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: crystal structure of translation initiation factor if-1 from2 streptococcus pneumoniae tigr4
93c6c00A_
not modelled 95.5 35
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: solution structure of translation initiation factor 1 from clostridium2 difficile
94c3d0fA_
not modelled 95.4 14
PDB header:transferase
Chain: A: PDB Molecule:penicillin-binding 1 transmembrane protein mrca;
PDBTitle: structure of the big_1156.2 domain of putative penicillin-binding2 protein mrca from nitrosomonas europaea atcc 19718
95c4ro1B_
not modelled 95.3 23
PDB header:hydrolase
Chain: B: PDB Molecule:dis3-like exonuclease 2;
PDBTitle: an 3'-5'-exoribonuclease that specifically recognizes rnas.
96d1wfqa_
not modelled 95.1 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
97c6f3hB_
not modelled 95.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:exoribonuclease ii, mitochondrial;
PDBTitle: crystal structure of dss1 exoribonuclease active site mutant d477n2 from candida glabrata
98d1e3pa2
not modelled 95.0 41
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
99d1ah9a_
not modelled 94.9 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
100c2nchA_
not modelled 94.7 28
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-1;
PDBTitle: solution structure of translation initiation factor if1 from wolbachia2 endosymbiont strain trs of brugia malayi
101d1k3ra1
not modelled 94.6 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Hypothetical protein MTH1 (MT0001), insert domain
102c4c3jG_
not modelled 94.2 16
PDB header:transcription
Chain: G: PDB Molecule:dna-directed rna polymerase i subunit rpa43;
PDBTitle: structure of 14-subunit rna polymerase i at 3.35 a resolution,2 crystal form c2-90
103c5oikZ_
not modelled 93.3 17
PDB header:transcription
Chain: Z: PDB Molecule:transcription elongation factor spt5;
PDBTitle: structure of an rna polymerase ii-dsif transcription elongation2 complex
104c4ytlB_
not modelled 92.5 29
PDB header:transcription
Chain: B: PDB Molecule:transcription elongation factor spt5;
PDBTitle: structure of the kow2-kow3 domain of transcription elongation factor2 spt5.
105d1hr0w_
not modelled 91.4 32
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
106c3aqqD_
not modelled 90.7 20
PDB header:dna binding protein
Chain: D: PDB Molecule:calcium-regulated heat stable protein 1;
PDBTitle: crystal structure of human crhsp-24
107c4qvzB_
not modelled 89.9 20
PDB header:translation
Chain: B: PDB Molecule:fragile x mental retardation protein 1;
PDBTitle: fmrp n-terminal domain
108d1h95a_
not modelled 89.5 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
109c5vl1D_
not modelled 89.1 22
PDB header:ligase
Chain: D: PDB Molecule:lysine--trna ligase;
PDBTitle: crystal structure of lysyl-trna synthetase from mycobacterium ulcerans2 complexed with l-lysine
110d1jjga_
not modelled 88.8 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
111d1luza_
not modelled 87.3 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
112c2ytvA_
not modelled 87.0 17
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fifth cold-shock domain of the human2 kiaa0885 protein (unr protein)
113c2ytyA_
not modelled 86.5 23
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein)
114d1e1oa1
not modelled 85.8 20
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
115c2lssA_
not modelled 85.3 20
PDB header:rna binding protein, dna binding protein
Chain: A: PDB Molecule:cold shock-like protein;
PDBTitle: solution structure of the r. rickettsii cold shock-like protein
116c2ytxA_
not modelled 84.9 19
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the second cold-shock domain of the human2 kiaa0885 protein (unr protein)
117c1e22A_
not modelled 84.6 20
PDB header:ligase
Chain: A: PDB Molecule:lysyl-trna synthetase;
PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp
118d1bbua1
not modelled 84.2 22
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Anticodon-binding domain
119c1h9mB_
not modelled 81.4 23
PDB header:binding protein
Chain: B: PDB Molecule:molybdenum-binding-protein;
PDBTitle: two crystal structures of the cytoplasmic molybdate-binding protein2 modg suggest a novel cooperative binding mechanism and provide3 insights into ligand-binding specificity. peg-grown form with4 molybdate bound
120c2bkdN_
not modelled 80.8 16
PDB header:nuclear protein
Chain: N: PDB Molecule:fragile x mental retardation 1 protein;
PDBTitle: structure of the n-terminal domain of fragile x mental retardation2 protein

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite