Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1632c_(-)_1836394_1836837
DateFri Aug 2 13:30:22 BST 2019
Unique Job ID24dcad558acafc4f
SequenceVRAVDEYTVH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.523 Y:36.080 Z:38.058
Model (left) based on template d2p12a1
Top template information
Fold:FomD barrel-like
Superfamily:FomD-like
Family:FomD-like
Confidence and coverage
Confidence:100.0% Coverage: 97%
143 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2p12a1



100.0 59
Fold:FomD barrel-like
Superfamily:FomD-like
Family:FomD-like
2c3exmA_



99.6 30
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatase sc4828;
PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp
3c5zdnA_



99.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:fomd;
PDBTitle: the complex structure of fomd with cdp
4c1rrjA_



83.6 16
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase i;
PDBTitle: structural mechanisms of camptothecin resistance by2 mutations in human topoisomerase i
5c1a31A_



81.8 16
PDB header:isomerase/dna
Chain: A: PDB Molecule:protein (topoisomerase i);
PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex
6c1nh3A_



81.3 16
PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase i;
PDBTitle: human topoisomerase i ara-c complex
7d1k4ta3



81.1 16
Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
8c2b9sA_



74.3 22
PDB header:isomerase/dna
Chain: A: PDB Molecule:topoisomerase i-like protein;
PDBTitle: crystal structure of heterodimeric l. donovani topoisomerase i-2 vanadate-dna complex
9d1oisa_



73.9 19
Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
10c5htlA_



50.3 26
PDB header:biosynthetic protein
Chain: A: PDB Molecule:msha biogenesis protein mshe;
PDBTitle: structure of mshe with cdg
11d1nvpd1



40.0 17
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
12d1nh2d1



40.0 17
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
13c3wo8B_



39.1 9
PDB header:hydrolase
Chain: B: PDB Molecule:beta-n-acetylglucosaminidase;
PDBTitle: crystal structure of the beta-n-acetylglucosaminidase from thermotoga2 maritima
14c5bzaA_



38.4 9
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: crystal structure of cbsa from thermotoga neapolitana
15c5mj1A_



33.7 35
PDB header:immune system
Chain: A: PDB Molecule:cd83 antigen;
PDBTitle: extracellular domain of human cd83 - rhombohedral crystal form
16c3cr8C_



33.3 17
PDB header:transferase
Chain: C: PDB Molecule:sulfate adenylyltransferase, adenylylsulfate kinase;
PDBTitle: hexameric aps kinase from thiobacillus denitrificans
17c5mz2I_



32.7 19
PDB header:photosynthesis
Chain: I: PDB Molecule:rubisco small subunit;
PDBTitle: rubisco from thalassiosira antarctica
18d1bwvs_



32.5 19
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
19c5nv3P_



32.3 28
PDB header:lyase
Chain: P: PDB Molecule:ribulose bisphosphate carboxylase small chain 1;
PDBTitle: structure of rubisco from rhodobacter sphaeroides in complex with cabp
20d1bxni_



32.0 28
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
21c6ejfQ_



not modelled 32.0 32
PDB header:motor protein
Chain: Q: PDB Molecule:type iv pilus assembly protein pilf;
PDBTitle: thermus thermophilus pilf atpase (apoprotein form)
22d1svdm1



not modelled 31.7 22
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
23d2nn4a1



not modelled 29.3 16
Fold:YqgQ-like
Superfamily:YqgQ-like
Family:YqgQ-like
24d1g5ta_



not modelled 29.0 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
25c1nvpD_



not modelled 28.9 19
PDB header:transcription/dna
Chain: D: PDB Molecule:transcription initiation factor iia gamma chain;
PDBTitle: human tfiia/tbp/dna complex
26c2ybvN_



not modelled 28.5 17
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
27d1rbli_



not modelled 28.4 14
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
28d2oqoa1



not modelled 28.4 35
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:PBP transglycosylase domain-like
29c6nd4P_



not modelled 28.0 20
PDB header:ribosome
Chain: P: PDB Molecule:utp6;
PDBTitle: conformational switches control early maturation of the eukaryotic2 small ribosomal subunit
30d1uzhc1



not modelled 25.6 28
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
31c5ydcA_



not modelled 25.5 15
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator rv1828;
PDBTitle: crystal structure of mercury soaked c-terminal domain of rv1828 from2 mycobacterium tuberculosis
32c2n03A_



not modelled 25.5 29
PDB header:structural protein
Chain: A: PDB Molecule:plectin;
PDBTitle: solution nmr structure plectin repeat domain 6 (4403-4606) of plectin2 from homo sapiens, northeast structural genomics consortium (nesg)3 target hr6354e
33c1nh2D_



not modelled 25.4 19
PDB header:transcription/dna
Chain: D: PDB Molecule:transcription initiation factor iia small chain;
PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex
34d1g64b_



not modelled 25.2 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
35c2jobA_



not modelled 24.9 26
PDB header:lipid binding protein
Chain: A: PDB Molecule:antilipopolysaccharide factor;
PDBTitle: solution structure of an antilipopolysaccharide factor from2 shrimp and its possible lipid a binding site
36c5iobC_



not modelled 24.0 14
PDB header:hydrolase
Chain: C: PDB Molecule:beta-glucosidase-related glycosidases;
PDBTitle: crystal structure of beta-n-acetylglucosaminidase-like protein from2 corynebacterium glutamicum
37c4jglA_



not modelled 23.2 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a streptavidin-like protein (bacegg_01519) from2 bacteroides eggerthii dsm 20697 at 1.25 a resolution
38c4yyfC_



not modelled 23.0 16
PDB header:hydrolase
Chain: C: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: the crystal structure of a glycosyl hydrolase of gh3 family member2 from [mycobacterium smegmatis str. mc2 155
39c5lqdB_



not modelled 22.8 21
PDB header:transferase
Chain: B: PDB Molecule:alpha,alpha-trehalose-phosphate synthase;
PDBTitle: trehalose-6-phosphate synthase, gdp-glucose-dependent otsa
40c5cwnA_



not modelled 22.4 27
PDB header:de novo protein
Chain: A: PDB Molecule:designed helical repeat protein;
PDBTitle: crystal structure of de novo designed helical repeat protein dhr71
41c6f8lJ_



not modelled 22.0 26
PDB header:motor protein
Chain: J: PDB Molecule:type iv pilus assembly protein pilf;
PDBTitle: thermus thermophilus pilf atpase (amppnp-bound form)
42d1wpua1



not modelled 21.8 18
Fold:Hut operon positive regulatory protein HutP
Superfamily:Hut operon positive regulatory protein HutP
Family:Hut operon positive regulatory protein HutP
43d2csba1



not modelled 21.2 24
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
44c4hdnA_



not modelled 21.2 30
PDB header:transferase
Chain: A: PDB Molecule:arsa;
PDBTitle: crystal structure of arsab in the substrate-free state.
45c4g2nA_



not modelled 20.5 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-isomer specific 2-hydroxyacid dehydrogenase, nad-binding;
PDBTitle: crystal structure of putative d-isomer specific 2-hydroxyacid2 dehydrogenase, nad-binding from polaromonas sp. js6 66
46c6b5fB_



not modelled 20.2 19
PDB header:transferase
Chain: B: PDB Molecule:nicotinate-nucleotide--dimethylbenzimidazole
PDBTitle: crystal structure of nicotinate mononucleotide-5,6-2 dimethylbenzimidazole phosphoribosyltransferase cobt from yersinia3 enterocolitica
47c1fuiB_



not modelled 20.1 19
PDB header:isomerase
Chain: B: PDB Molecule:l-fucose isomerase;
PDBTitle: l-fucose isomerase from escherichia coli
48c2jrtA_



not modelled 19.8 39
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5
49d1ir1s_



not modelled 19.8 39
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
50c1t7lA_



not modelled 19.6 19
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of cobalamin-independent methionine synthase from t.2 maritima
51d1l5oa_



not modelled 18.3 22
Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
52c3p0jD_



not modelled 17.9 24
PDB header:ligase
Chain: D: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: leishmania major tyrosyl-trna synthetase in complex with tyrosinol,2 triclinic crystal form 1
53c4hdnB_



not modelled 17.6 22
PDB header:transferase
Chain: B: PDB Molecule:arsb;
PDBTitle: crystal structure of arsab in the substrate-free state.
54d1mlaa1



not modelled 17.3 16
Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:FabD-like
55c3hzsA_



not modelled 17.2 20
PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin
56d1x2ga1



not modelled 17.1 13
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SP1160 C-terminal domain-like
57c3vmtA_



not modelled 16.5 19
PDB header:transferase
Chain: A: PDB Molecule:monofunctional glycosyltransferase;
PDBTitle: crystal structure of staphylococcus aureus membrane-bound2 transglycosylase in complex with a lipid ii analog
58d2oa4a1



not modelled 15.5 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:SPO1678-like
59c4prkB_



not modelled 15.5 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-phosphoerythronate dehydrogenase;
PDBTitle: crystal structure of d-lactate dehydrogenase (d-ldh) from2 lactobacillus jensenii
60d1j33a_



not modelled 15.3 30
Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
61c2pi1C_



not modelled 15.2 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:d-lactate dehydrogenase;
PDBTitle: crystal structure of d-lactate dehydrogenase from aquifex2 aeolicus complexed with nad and lactic acid
62c3o10D_



not modelled 13.7 19
PDB header:chaperone
Chain: D: PDB Molecule:sacsin;
PDBTitle: crystal structure of the hepn domain from human sacsin
63c2omeA_



not modelled 13.6 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:c-terminal-binding protein 2;
PDBTitle: crystal structure of human ctbp2 dehydrogenase complexed with nad(h)
64d1sc6a1



not modelled 13.5 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
65c3bazA_



not modelled 13.4 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyphenylpyruvate reductase;
PDBTitle: structure of hydroxyphenylpyruvate reductase from coleus blumei in2 complex with nadp+
66c2w2kB_



not modelled 13.3 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:d-mandelate dehydrogenase;
PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a.
67c2gcgB_



not modelled 13.3 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyoxylate reductase/hydroxypyruvate reductase;
PDBTitle: ternary crystal structure of human glyoxylate2 reductase/hydroxypyruvate reductase
68d2hf5a1



not modelled 13.1 17
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
69c5j23D_



not modelled 13.1 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:2-hydroxyacid dehydrogenase;
PDBTitle: crystal structure of nadph-dependent glyoxylate/hydroxypyruvate2 reductase smc04462 (smghrb) from sinorhizobium meliloti in complex3 with 2'-phospho-adp-ribose
70d1ej7s_



not modelled 12.9 39
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
71c6p2iA_



not modelled 12.6 12
PDB header:oxidoreductase, biosynthetic protein
Chain: A: PDB Molecule:glycerate dehydrogenase;
PDBTitle: acyclic imino acid reductase (bsp5) in complex with nadph and d-arg
72d2caza1



not modelled 12.1 13
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS23 C-terminal domain
73c5ydnA_



not modelled 12.0 28
PDB header:viral protein
Chain: A: PDB Molecule:gene product j;
PDBTitle: mu pahge neck subunit
74c5m4sA_



not modelled 11.9 19
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor iia subunit 2,transcription
PDBTitle: transcription factor tfiia as a single chain protein
75c2cazD_



not modelled 11.8 13
PDB header:protein transport
Chain: D: PDB Molecule:suppressor protein stp22 of temperature-sensitive alpha-
PDBTitle: escrt-i core
76c4xcvA_



not modelled 11.7 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadp-dependent 2-hydroxyacid dehydrogenase;
PDBTitle: probable 2-hydroxyacid dehydrogenase from rhizobium etli cfn 42 in2 complex with nadph
77c3gvxA_



not modelled 11.7 4
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerate dehydrogenase related protein;
PDBTitle: crystal structure of glycerate dehydrogenase related2 protein from thermoplasma acidophilum
78c3eu8D_



not modelled 11.5 15
PDB header:hydrolase
Chain: D: PDB Molecule:putative glucoamylase;
PDBTitle: crystal structure of putative glucoamylase (yp_210071.1) from2 bacteroides fragilis nctc 9343 at 2.12 a resolution
79c2eyuA_



not modelled 11.4 18
PDB header:protein transport
Chain: A: PDB Molecule:twitching motility protein pilt;
PDBTitle: the crystal structure of the c-terminal domain of aquifex2 aeolicus pilt
80c2d0iC_



not modelled 11.4 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:dehydrogenase;
PDBTitle: crystal structure ph0520 protein from pyrococcus horikoshii ot3
81d1dxya1



not modelled 11.2 23
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
82d1w7ca3



not modelled 11.2 16
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
83c1wwkA_



not modelled 11.2 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of phosphoglycerate dehydrogenase from pyrococcus2 horikoshii ot3
84c5e3eB_



not modelled 11.1 29
PDB header:toxin
Chain: B: PDB Molecule:large exoprotein involved in heme utilization or adhesion;
PDBTitle: crystal structure of cdia-ct/cdii complex from y. kristensenii 33638
85c1xnjB_



not modelled 11.1 22
PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: aps complex of human paps synthetase 1
86c4cukA_



not modelled 10.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-lactate dehydrogenase;
PDBTitle: structure of salmonella d-lactate dehydrogenase in complex2 with nadh
87c1vw2H_



not modelled 10.9 27
PDB header:toxin
Chain: H: PDB Molecule:tcda1;
PDBTitle: crystal structure of tcda1
88c6ckaB_



not modelled 10.8 27
PDB header:viral protein
Chain: B: PDB Molecule:paratox;
PDBTitle: crystal structure of paratox
89c4uiiB_



not modelled 10.8 20
PDB header:transferase
Chain: B: PDB Molecule:ggdef domain protein;
PDBTitle: crystal structure of the azotobacter vinelandii globin-2 coupled oxygen sensor in the aquo-met form
90d2f6ma1



not modelled 10.8 13
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS23 C-terminal domain
91c4aq2I_



not modelled 10.7 31
PDB header:oxidoreductase
Chain: I: PDB Molecule:homogentisate 1,2-dioxygenase;
PDBTitle: resting state of homogentisate 1,2-dioxygenase
92c1wolA_



not modelled 10.7 12
PDB header:unknown function
Chain: A: PDB Molecule:122aa long conserved hypothetical protein;
PDBTitle: crystal structure of st0689, an archaeal hepn homologue
93d2dlda1



not modelled 10.7 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
94c1j4aA_



not modelled 10.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-lactate dehydrogenase;
PDBTitle: insights into domain closure, substrate specificity and2 catalysis of d-lactate dehydrogenase from lactobacillus3 bulgaricus
95d1mx3a1



not modelled 10.5 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
96d1t1ea2



not modelled 10.5 22
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Subtilase propeptides/inhibitors
97c4xkjA_



not modelled 10.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-lactate dehydrogenase;
PDBTitle: a novel d-lactate dehydrogenase from sporolactobacillus sp
98c2yq4C_



not modelled 10.4 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:d-isomer specific 2-hydroxyacid dehydrogenase;
PDBTitle: crystal structure of d-isomer specific 2-hydroxyacid dehydrogenase2 from lactobacillus delbrueckii ssp. bulgaricus
99d1qp8a1



not modelled 10.3 23
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain

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