Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1635c_(-)_1840579_1842249
DateFri Aug 2 13:30:23 BST 2019
Unique Job IDe9a9ab08deb076cf
SequenceMHASRPGAPP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.289 Y:47.484 Z:78.929
Model (left) based on template c5f15A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
Confidence and coverage
Confidence:100.0% Coverage: 79%
439 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5f15A_



100.0 14
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
2c6p2rB_



99.8 13
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
3c6p25A_



99.8 15
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
4c3wajA_



99.7 14
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
5c3rceA_



99.7 12
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
6c6eznF_



99.5 16
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
7d2jfga2



79.5 21
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
8c3uagA_



42.3 21
PDB header:ligase
Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d-
PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
9c3lk7A_



37.3 21
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-glutamate2 (murd) ligase from streptococcus agalactiae to 1.5a
10c3mvnA_



29.3 32
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-medo-
PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamyl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp
11d1xq4a_



27.7 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ApaG-like
Family:ApaG-like
12c2f1eA_



27.5 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein apag;
PDBTitle: solution structure of apag protein
13c5hdwA_



26.0 24
PDB header:protein binding
Chain: A: PDB Molecule:f-box only protein 3;
PDBTitle: apag domain of fbxo3
14d1tzaa_



25.7 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ApaG-like
Family:ApaG-like
15d1xvsa_



25.0 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:ApaG-like
Family:ApaG-like
16c5n6mA_



19.9 13
PDB header:membrane protein
Chain: A: PDB Molecule:apolipoprotein n-acyltransferase;
PDBTitle: structure of the membrane integral lipoprotein n-acyltransferase lnt2 from p. aeruginosa
17d1p3da2



18.7 36
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
18c3hn7A_



18.6 27
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution
19c4bucA_



18.1 13
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: crystal structure of murd ligase from thermotoga maritima in apo form
20d1e8ca2



14.5 23
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
21c3tr7A_



not modelled 14.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: structure of a uracil-dna glycosylase (ung) from coxiella burnetii
22c6nbxG_



not modelled 12.9 14
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
23d1vk3a3



not modelled 11.8 18
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
24c3gt2A_



not modelled 11.3 18
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the p60 domain from m. avium paratuberculosis2 antigen map1272c
25c4c13A_



not modelled 11.2 23
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate--l-lysine ligase;
PDBTitle: x-ray crystal structure of staphylococcus aureus mure with udp-murnac-2 ala-glu-lys
26d1h9aa1



not modelled 11.1 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
27c2fynH_



not modelled 10.9 14
PDB header:oxidoreductase
Chain: H: PDB Molecule:cytochrome c1;
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
28c1e8cB_



not modelled 10.7 23
PDB header:ligase
Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate
PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide synthetase from2 e. coli
29d1s04a_



not modelled 10.7 27
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ProFAR isomerase associated domain
30c1zrtD_



not modelled 10.6 11
PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
31c2f00A_



not modelled 10.6 27
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
32d2evra2



not modelled 10.5 21
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:NlpC/P60
33c4afpA_



not modelled 10.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:metacaspase mca2;
PDBTitle: the structure of metacaspase 2 from t. brucei determined in the2 presence of samarium
34c5ifiA_



not modelled 10.0 18
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coenzyme a synthetase;
PDBTitle: crystal structure of acetyl-coa synthetase in complex with adenosine-2 5'-propylphosphate from cryptococcus neoformans h99
35c6b8cA_



not modelled 10.0 36
PDB header:hydrolase
Chain: A: PDB Molecule:nlp/p60;
PDBTitle: crystal structure of nlpc/p60 domain of peptidoglycan hydrolase saga
36c4bubA_



not modelled 9.9 18
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate--ld-lysine
PDBTitle: crystal structure of mure ligase from thermotoga maritima2 in complex with adp
37c1gqqA_



not modelled 9.8 36
PDB header:cell wall biosynthesis
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus influenzae
38d1vkya_



not modelled 9.8 31
Fold:QueA-like
Superfamily:QueA-like
Family:QueA-like
39c4uy5A_



not modelled 9.7 11
PDB header:transferase
Chain: A: PDB Molecule:histidine-specific methyltransferase egtd;
PDBTitle: crystal structure of histidine-specific methyltransferase egtd from2 mycobacterium smegmatis
40c2yiuE_



not modelled 9.7 11
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
41d1ofla_



not modelled 9.6 17
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Chondroitinase B
42c2lkjA_



not modelled 9.5 50
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-m;
PDBTitle: structures and interaction analyses of the integrin alpha-m beta-22 cytoplasmic tails
43c5eqnA_



not modelled 9.3 50
PDB header:hydrolase
Chain: A: PDB Molecule:frbj;
PDBTitle: structure of phosphonate hydroxylase
44d3c9ua2



not modelled 9.3 33
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
45d1jr7a_



not modelled 9.2 33
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Gab protein (hypothetical protein YgaT)
46c3n2aA_



not modelled 9.2 18
PDB header:ligase
Chain: A: PDB Molecule:bifunctional folylpolyglutamate synthase/dihydrofolate
PDBTitle: crystal structure of bifunctional folylpolyglutamate2 synthase/dihydrofolate synthase from yersinia pestis co92
47c5ey8D_



not modelled 9.2 18
PDB header:ligase
Chain: D: PDB Molecule:acyl-coa synthase;
PDBTitle: structure of fadd32 from mycobacterium smegmatis complexed to ampc20
48d1wdia_



not modelled 9.2 25
Fold:QueA-like
Superfamily:QueA-like
Family:QueA-like
49c3cwbQ_



not modelled 9.1 8
PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
50c1yy3A_



not modelled 9.1 44
PDB header:isomerase
Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase-
PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea)
51c4e9iB_



not modelled 9.1 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: glucose-6-p dehydrogenase (apo form) from trypanosoma cruzi
52c3on0D_



not modelled 9.0 18
PDB header:dna binding protein/dna
Chain: D: PDB Molecule:protein tram;
PDBTitle: crystal structure of the ped208 tram-sbma complex
53c3etcB_



not modelled 8.9 10
PDB header:ligase
Chain: B: PDB Molecule:amp-binding protein;
PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298
54c1qkiE_



not modelled 8.9 33
PDB header:oxidoreductase
Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase (variant2 canton r459l) complexed with structural nadp+
55c3rg2H_



not modelled 8.8 15
PDB header:ligase
Chain: H: PDB Molecule:enterobactin synthase component e (ente), 2,3-dihydro-2,3-
PDBTitle: structure of a two-domain nrps fusion protein containing the ente2 adenylation domain and entb aryl-carrier protein from enterobactin3 biosynthesis
56c1qcrD_



not modelled 8.7 5
PDB header:oxidoreductase
Chain: D: PDB Molecule:ubiquinol cytochrome c oxidoreductase;
PDBTitle: crystal structure of bovine mitochondrial cytochrome bc12 complex, alpha carbon atoms only
57d2zoda2



not modelled 8.7 25
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
58c1w78A_



not modelled 8.7 36
PDB header:synthase
Chain: A: PDB Molecule:folc bifunctional protein;
PDBTitle: e.coli folc in complex with dhpp and adp
59d1xnea_



not modelled 8.6 20
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ProFAR isomerase associated domain
60c1dbgA_



not modelled 8.5 18
PDB header:lyase
Chain: A: PDB Molecule:chondroitinase b;
PDBTitle: crystal structure of chondroitinase b
61c2bhlB_



not modelled 8.5 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase (deletion2 variant) complexed with glucose-6-phosphate
62c2xivA_



not modelled 8.5 12
PDB header:structural protein
Chain: A: PDB Molecule:hypothetical invasion protein;
PDBTitle: structure of rv1477, hypothetical invasion protein of mycobacterium2 tuberculosis
63d2pyta1



not modelled 8.3 24
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:EutQ-like
64d1t33a2



not modelled 8.1 12
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
65c2xjaD_



not modelled 8.1 32
PDB header:ligase
Chain: D: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2,6-
PDBTitle: structure of mure from m.tuberculosis with dipeptide and adp
66c1h9aA_



not modelled 8.1 29
PDB header:oxidoreductase (choh(d) - nad(p))
Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase;
PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp
67c4r0mA_



not modelled 8.0 10
PDB header:ligase
Chain: A: PDB Molecule:mcyg protein;
PDBTitle: structure of mcyg a-pcp complexed with phenylalanyl-adenylate
68d1pg4a_



not modelled 7.9 16
Fold:Acetyl-CoA synthetase-like
Superfamily:Acetyl-CoA synthetase-like
Family:Acetyl-CoA synthetase-like
69c6ijbA_



not modelled 7.9 9
PDB header:ligase
Chain: A: PDB Molecule:amp-binding domain protein;
PDBTitle: structure of 3-methylmercaptopropionate coa ligase mutant k523a in2 complex with amp and mmpa
70c1p84D_



not modelled 7.7 8
PDB header:oxidoreductase
Chain: D: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
71c3rkoF_



not modelled 7.7 11
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
72c4cmrB_



not modelled 7.7 41
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase/deacetylase family protein;
PDBTitle: the crystal structure of novel exo-type maltose-forming2 amylase(py04_0872) from pyrococcus sp. st04
73d3euga_



not modelled 7.5 12
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
74d1iz0a1



not modelled 7.5 5
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
75c5mvrA_



not modelled 7.4 24
PDB header:transferase
Chain: A: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsae;
PDBTitle: crystal structure of bacillus subtilus ydib
76c4gr5B_



not modelled 7.4 11
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of slgn1deltaasub in complex with ampcpp
77c6biqA_



not modelled 7.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:clan ca, family c40, nlpc/p60 superfamily cysteine
PDBTitle: structure of nlpc2 from trichomonas vaginalis
78d1clia2



not modelled 7.4 27
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
79c3ibmB_



not modelled 7.3 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila
80d2z1ea2



not modelled 7.3 53
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
81c2wtzC_



not modelled 7.2 32
PDB header:ligase
Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate-
PDBTitle: mure ligase of mycobacterium tuberculosis
82c5vrhA_



not modelled 7.1 11
PDB header:transferase
Chain: A: PDB Molecule:apolipoprotein n-acyltransferase;
PDBTitle: apolipoprotein n-acyltransferase c387s active site mutant
83c2fg0B_



not modelled 7.1 21
PDB header:hydrolase
Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion-
PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution
84c5oynB_



not modelled 7.0 12
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
85c4lgvA_



not modelled 7.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray crystal structure of glucose-6-phosphate 1-dehydrogenase from2 mycobacterium avium
86c3fp9E_



not modelled 7.0 60
PDB header:hydrolase
Chain: E: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis
87c2k1gA_



not modelled 7.0 27
PDB header:lipoprotein
Chain: A: PDB Molecule:lipoprotein spr;
PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162
88c2yvaB_



not modelled 6.8 29
PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa
89c4wd1A_



not modelled 6.8 15
PDB header:ligase
Chain: A: PDB Molecule:acetoacetate-coa ligase;
PDBTitle: acetoacetyl-coa synthetase from streptomyces lividans
90d2f4la1



not modelled 6.8 50
Fold:CUB-like
Superfamily:Acetamidase/Formamidase-like
Family:Acetamidase/Formamidase-like
91c5odnG_



not modelled 6.8 5
PDB header:dna binding protein
Chain: G: PDB Molecule:single-stranded dna-binding protein;
PDBTitle: salinibacter ruber single-strand binding protein
92c3mjjD_



not modelled 6.7 50
PDB header:hydrolase
Chain: D: PDB Molecule:predicted acetamidase/formamidase;
PDBTitle: crystal structure analysis of a recombinant predicted2 acetamidase/formamidase from the thermophile thermoanaerobacter3 tengcongensis
93c4pa5A_



not modelled 6.7 32
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: tgl - a bacterial spore coat transglutaminase - cystamine complex
94c4eatB_



not modelled 6.7 14
PDB header:ligase
Chain: B: PDB Molecule:benzoate-coenzyme a ligase;
PDBTitle: crystal structure of a benzoate coenzyme a ligase
95c2ii1A_



not modelled 6.7 33
PDB header:hydrolase
Chain: A: PDB Molecule:acetamidase;
PDBTitle: crystal structure of acetamidase (10172637) from bacillus halodurans2 at 1.95 a resolution
96c2zw3B_



not modelled 6.7 17
PDB header:cell adhesion
Chain: B: PDB Molecule:gap junction beta-2 protein;
PDBTitle: structure of the connexin-26 gap junction channel at 3.52 angstrom resolution
97c4f6oA_



not modelled 6.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:metacaspase-1;
PDBTitle: crystal structure of the yeast metacaspase yca1
98c5ym0A_



not modelled 6.7 17
PDB header:lyase
Chain: A: PDB Molecule:dihydroxy-acid dehydratase, chloroplastic;
PDBTitle: the crystal structure of dhad
99c3kj0B_



not modelled 6.7 38
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: mcl-1 in complex with bim bh3 mutant i2dy

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below