Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1638A_(-)_1846723_1846980
DateFri Aug 2 13:30:23 BST 2019
Unique Job ID1dd3e966019b021f
SequenceMPDEPTPPEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:13.602 Y:18.548 Z:15.337
Model (left) based on template d1w53a_
Top template information
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Phosphoserine phosphatase RsbU, N-terminal domain
Confidence and coverage
Confidence: 38.7% Coverage: 14%
12 residues ( 14% of your sequence) have been modelled with 38.7% confidence by the single highest scoring template.
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1w53a_



38.7 58
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Phosphoserine phosphatase RsbU, N-terminal domain
2c2qdqA_



28.5 55
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: crystal structure of the talin dimerisation domain
3c3teqB_



28.2 20
PDB header:signaling protein
Chain: B: PDB Molecule:stromal interaction molecule 1;
PDBTitle: crystal structure of soar domain
4c2j6yB_



26.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:phosphoserine phosphatase rsbu;
PDBTitle: structural and functional characterisation of partner switching2 regulating the environmental stress response in bacillus subtilis
5c5o7bA_



24.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine-phosphatase
PDBTitle: crystal structure of the slr0328 tyrosine phosphatase wzb from2 synechocystis sp. pcc 6803
6c5en7H_



24.1 29
PDB header:splicing
Chain: H: PDB Molecule:suppressor of mec and unc defects;
PDBTitle: crystal structure of the smu1-red complex (native) of caenorhabditis2 elegans.
7c6mspA_



21.1 60
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein foldit3;
PDBTitle: de novo designed protein foldit3
8c6c52C_



19.7 21
PDB header:de novo protein
Chain: C: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
9c6c52D_



19.7 21
PDB header:de novo protein
Chain: D: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
10c6c52A_



19.7 21
PDB header:de novo protein
Chain: A: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
11c6c52B_



19.7 21
PDB header:de novo protein
Chain: B: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
12c4a9aC_



19.2 36
PDB header:translation
Chain: C: PDB Molecule:translation machinery-associated protein 46;
PDBTitle: structure of rbg1 in complex with tma46 dfrp domain
13c3ddcB_



18.8 15
PDB header:hydrolase/apoptosis
Chain: B: PDB Molecule:ras association domain-containing family protein 5;
PDBTitle: crystal structure of nore1a in complex with ras
14c2kjrA_



18.3 23
PDB header:chaperone
Chain: A: PDB Molecule:cg11242;
PDBTitle: solution nmr structure of the n-terminal ubiquitin-like2 domain from tubulin-binding cofactor b, cg11242, from3 drosophila melanogaster. northeast structural genomics4 consortium target fr629a (residues 8-92)
15c3rgcB_



18.3 14
PDB header:chaperone
Chain: B: PDB Molecule:possible periplasmic protein;
PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally related sura-like chaperones in the human pathogen3 campylobacter jejuni
16c2fekA_



18.1 30
PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: structure of a protein tyrosine phosphatase
17c3n8kG_



17.7 16
PDB header:lyase
Chain: G: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid
18d1h05a_



17.3 10
Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
19c5o9zN_



16.8 27
PDB header:splicing
Chain: N: PDB Molecule:zinc finger matrin-type protein 2;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
20d1u5tb2



15.9 32
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
21c5tw1E_



not modelled 15.4 12
PDB header:transcription activator/transferase/dna
Chain: E: PDB Molecule:dna-directed rna polymerase subunit omega;
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
22c2qdqB_



not modelled 15.0 55
PDB header:structural protein
Chain: B: PDB Molecule:talin-1;
PDBTitle: crystal structure of the talin dimerisation domain
23c1qloA_



not modelled 14.4 40
PDB header:membrane proteins
Chain: A: PDB Molecule:herpes simplex virus protein icp47;
PDBTitle: structure of the active domain of the herpes simplex virus2 protein icp47 in water/sodium dodecyl sulfate solution3 determined by nuclear magnetic resonance spectroscopy
24c4b6wA_



not modelled 13.3 32
PDB header:chaperone
Chain: A: PDB Molecule:tubulin-specific chaperone;
PDBTitle: architecture of trypanosoma brucei tubulin-binding cofactor b
25d1v6ea_



not modelled 13.2 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
26c1ihqA_



not modelled 12.6 54
PDB header:de novo protein
Chain: A: PDB Molecule:chimeric peptide glytm1bzip: tropomyosin alpha
PDBTitle: glytm1bzip: a chimeric peptide model of the n-terminus of a2 rat short alpha tropomyosin with the n-terminus encoded by3 exon 1b
27c4nm6A_



not modelled 12.5 39
PDB header:oxidoreductase/dna
Chain: A: PDB Molecule:methylcytosine dioxygenase tet2;
PDBTitle: crystal structure of tet2-dna complex
28d1p8aa_



not modelled 12.4 34
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
29c2jmxA_



not modelled 12.4 78
PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase o subunit, mitochondrial;
PDBTitle: oscp-nt (1-120) in complex with n-terminal (1-25) alpha2 subunit from f1-atpase
30c1t0yA_



not modelled 12.2 18
PDB header:chaperone
Chain: A: PDB Molecule:tubulin folding cofactor b;
PDBTitle: solution structure of a ubiquitin-like domain from tubulin-2 binding cofactor b
31d1t0ya_



not modelled 12.2 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
32c4zrkE_



not modelled 12.1 36
PDB header:signaling protein/transferase
Chain: E: PDB Molecule:serine/threonine-protein kinase lats1;
PDBTitle: merlin-ferm and lats1 complex
33c4zrkH_



not modelled 12.1 36
PDB header:signaling protein/transferase
Chain: H: PDB Molecule:serine/threonine-protein kinase lats1;
PDBTitle: merlin-ferm and lats1 complex
34c4zrkF_



not modelled 12.1 36
PDB header:signaling protein/transferase
Chain: F: PDB Molecule:serine/threonine-protein kinase lats1;
PDBTitle: merlin-ferm and lats1 complex
35d1uqra_



not modelled 11.9 7
Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
36c4zrkG_



not modelled 11.8 36
PDB header:signaling protein/transferase
Chain: G: PDB Molecule:serine/threonine-protein kinase lats1;
PDBTitle: merlin-ferm and lats1 complex
37d2g1da1



not modelled 11.2 32
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:Ribosomal protein S24e
38c3rfwA_



not modelled 10.7 16
PDB header:chaperone
Chain: A: PDB Molecule:cell-binding factor 2;
PDBTitle: the virulence factor peb4 and the periplasmic protein cj1289 are two2 structurally-related sura-like chaperones in the human pathogen3 campylobacter jejuni
39c5wbuQ_



not modelled 10.7 40
PDB header:transferase
Chain: Q: PDB Molecule:proline-rich akt1 substrate 1;
PDBTitle: crystal structure of mtor(deltan)-mlst8-pras40(alpha-helix & beta-2 strand) complex
40c5wbuR_



not modelled 10.7 40
PDB header:transferase
Chain: R: PDB Molecule:proline-rich akt1 substrate 1;
PDBTitle: crystal structure of mtor(deltan)-mlst8-pras40(alpha-helix & beta-2 strand) complex
41d1gtza_



not modelled 10.6 14
Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
42c3fd0B_



not modelled 10.5 30
PDB header:lyase
Chain: B: PDB Molecule:putative cystathionine beta-lyase involved in aluminum
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_470671.1) from listeria innocua at 2.12 a3 resolution
43c3ht4B_



not modelled 10.4 40
PDB header:lyase
Chain: B: PDB Molecule:aluminum resistance protein;
PDBTitle: crystal structure of the q81a77_baccr protein from bacillus cereus.2 northeast structural genomics consortium target bcr213
44c5ietA_



not modelled 10.3 30
PDB header:gene regulation
Chain: A: PDB Molecule:bacterial proteasome activator;
PDBTitle: crystal structure of mycobacterium tuberculosis atp-independent2 proteasome activator
45c6b4eD_



not modelled 10.1 46
PDB header:transport protein
Chain: D: PDB Molecule:nucleoporin nup42;
PDBTitle: crystal structure of saccharomyces cerevisiae gle1 ctd-nup42 gbm2 complex
46c5ez1B_



not modelled 9.1 19
PDB header:isomerase
Chain: B: PDB Molecule:putative peptidyl-prolyl cis-trans isomerase hp_0175;
PDBTitle: crystal structure of cell binding factor 2 from helicobacter pylori in2 complex with i2ca
47c4h9kA_



not modelled 8.5 35
PDB header:hydrolase
Chain: A: PDB Molecule:hog cholera virus;
PDBTitle: crystal structure of cleavage site mutant of npro of classical swine2 fever virus.
48c5en6C_



not modelled 8.5 29
PDB header:splicing
Chain: C: PDB Molecule:suppressor of mec and unc defects;
PDBTitle: crystal structure of the smu1-red complex (semet) of caenorhabditis2 elegans
49c3rh0A_



not modelled 8.1 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2
50c2wmyH_



not modelled 7.9 22
PDB header:hydrolase
Chain: H: PDB Molecule:putative acid phosphatase wzb;
PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate.
51c3plwA_



not modelled 7.7 60
PDB header:hydrolase
Chain: A: PDB Molecule:recombination enhancement function protein;
PDBTitle: ref protein from p1 bacteriophage
52c2ktrA_



not modelled 7.6 17
PDB header:signaling protein, transport protein
Chain: A: PDB Molecule:sequestosome-1;
PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs
53c4wo7A_



not modelled 7.5 0
PDB header:isomerase
Chain: A: PDB Molecule:foldase protein prsa;
PDBTitle: crystal structure of prsa from bacillus subtilis
54c4rhcH_



not modelled 7.4 9
PDB header:lyase
Chain: H: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystal structure of 3-dehydroquinate dehydratase from acinetobacter2 baumannii at 2.68 a resolution
55c5xyiY_



not modelled 7.3 15
PDB header:ribosome
Chain: Y: PDB Molecule:ribosomal protein s24e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
56c5lqzU_



not modelled 7.1 44
PDB header:hydrolase
Chain: U: PDB Molecule:atp synthase oscp subunit;
PDBTitle: structure of f-atpase from pichia angusta, state1
57d1abva_



not modelled 7.1 22
Fold:ATPD N-terminal domain-like
Superfamily:N-terminal domain of the delta subunit of the F1F0-ATP synthase
Family:N-terminal domain of the delta subunit of the F1F0-ATP synthase
58c2qhvA_



not modelled 7.0 9
PDB header:transferase
Chain: A: PDB Molecule:lipoyltransferase;
PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b
59c2qhsA_



not modelled 7.0 9
PDB header:transferase
Chain: A: PDB Molecule:lipoyltransferase;
PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b
60c5mpyB_



not modelled 7.0 15
PDB header:plant protein
Chain: B: PDB Molecule:multiple organellar rna editing factor 9, chloroplastic;
PDBTitle: crystal structure of arabidopsis thaliana rna editing factor morf9
61c3j21Y_



not modelled 7.0 27
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l30p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
62d1s2xa_



not modelled 6.8 40
Fold:STAT-like
Superfamily:Cag-Z
Family:Cag-Z
63c1s2xA_



not modelled 6.8 40
PDB header:unknown function
Chain: A: PDB Molecule:cag-z;
PDBTitle: crystal structure of cag-z from helicobacter pylori
64c2a7uB_



not modelled 6.5 22
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase delta chain;
PDBTitle: nmr solution structure of the e.coli f-atpase delta subunit n-terminal2 domain in complex with alpha subunit n-terminal 22 residues
65c2zkro_



not modelled 6.5 33
PDB header:ribosomal protein/rna
Chain: O: PDB Molecule:rna expansion segment es30;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
66c3bhpA_



not modelled 6.3 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0291 protein ynzc;
PDBTitle: crystal structure of upf0291 protein ynzc from bacillus2 subtilis at resolution 2.0 a. northeast structural3 genomics consortium target sr384
67c2kj6A_



not modelled 6.3 32
PDB header:chaperone
Chain: A: PDB Molecule:tubulin folding cofactor b;
PDBTitle: nmr solution structure of a tubulin folding cofactor b2 obtained from arabidopsis thaliana: northeast structural3 genomics consortium target ar3436a
68c3hvyC_



not modelled 6.2 20
PDB header:lyase
Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis
PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution
69c3u80A_



not modelled 5.9 5
PDB header:unknown function
Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii;
PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum
70c3gwpA_



not modelled 5.9 20
PDB header:lyase
Chain: A: PDB Molecule:carbon-sulfur lyase involved in aluminum resistance;
PDBTitle: crystal structure of carbon-sulfur lyase involved in aluminum2 resistance (yp_878183.1) from clostridium novyi nt at 2.90 a3 resolution
71d1wjna_



not modelled 5.9 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
72c4axgC_



not modelled 5.8 40
PDB header:translation
Chain: C: PDB Molecule:protein cup;
PDBTitle: structure of eif4e-cup complex
73c3lwzC_



not modelled 5.7 12
PDB header:lyase
Chain: C: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-dehydroquinate2 dehydratase (aroq) from yersinia pestis
74d1ywxa1



not modelled 5.6 20
Fold:Ribosomal proteins S24e, L23 and L15e
Superfamily:Ribosomal proteins S24e, L23 and L15e
Family:Ribosomal protein S24e
75c6cv6L_



not modelled 5.5 12
PDB header:lyase
Chain: L: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystal structure of 3-dehydroquinate dehydratase, type ii, from2 burkholderia phymatum stm815
76c5xauC_



not modelled 5.5 13
PDB header:cell adhesion
Chain: C: PDB Molecule:laminin subunit gamma-1;
PDBTitle: crystal structure of integrin binding fragment of laminin-511
77c2c49A_



not modelled 5.5 33
PDB header:transferase
Chain: A: PDB Molecule:sugar kinase mj0406;
PDBTitle: crystal structure of methanocaldococcus jannaschii nucleoside kinase -2 an archaeal member of the ribokinase family
78d1gqoa_



not modelled 5.2 7
Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
79c3cvjB_



not modelled 5.2 23
PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution
80d1q1va_



not modelled 5.1 21
Fold:Another 3-helical bundle
Superfamily:DEK C-terminal domain
Family:DEK C-terminal domain

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