Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1643_(rplT)_1853191_1853580
DateFri Aug 2 13:30:24 BST 2019
Unique Job IDfbf430b83cfe2ed4
SequenceMARVKRAVNA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.635 Y:42.021 Z:88.253
Model (left) based on template c5o60R_
Top template information
PDB header:ribosome
Chain: R: PDB Molecule:50s ribosomal protein l20;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 96%
124 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60R_



100.0 91
PDB header:ribosome
Chain: R: PDB Molecule:50s ribosomal protein l20;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c4v19U_



100.0 33
PDB header:ribosome
Chain: U: PDB Molecule:mitoribosomal protein bl20m, mrpl20;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
3d2j01u1



100.0 50
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
4d2zjrn1



100.0 45
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
5c3j3wQ_



100.0 52
PDB header:ribosome
Chain: Q: PDB Molecule:50s ribosomal protein l20;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 ii-a)
6c3bboS_



100.0 37
PDB header:ribosome
Chain: S: PDB Molecule:ribosomal protein l20;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
7c2ftcL_



100.0 33
PDB header:ribosome
Chain: L: PDB Molecule:mrpl20 protein;
PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome
8c2ghjD_



100.0 56
PDB header:structural protein
Chain: D: PDB Molecule:50s ribosomal protein l20;
PDBTitle: crystal structure of folded and partially unfolded forms of aquifex2 aeolicus ribosomal protein l20
9d2gyco1



100.0 60
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
10d1gyza_



99.9 52
Fold:PABP domain-like
Superfamily:Ribosomal protein L20
Family:Ribosomal protein L20
11d3er7a1



47.3 33
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Exig0174-like
12d2coba1



47.1 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Psq domain
13d3deua1



38.0 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
14c6g1nB_



38.0 16
PDB header:antitoxin
Chain: B: PDB Molecule:antitoxin hicb;
PDBTitle: crystal structure of the burkholderia pseudomallei antitoxin hicb
15c2k53A_



35.5 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:a3dk08 protein;
PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9
16c2m8gX_



32.9 30
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
17d1ku9a_



29.1 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DNA-binding protein Mj223
18d1fipa_



28.7 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
19c5wylC_



28.4 13
PDB header:ribosomal protein/nuclear protein
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of chaetomium thermophilum utp10 n-terminal domain2 in complex with utp17 c-terminal helices
20c3e7lD_



25.3 19
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
21c3fm5D_



not modelled 23.7 16
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (marr family)2 from rhodococcus sp. rha1
22c3deuB_



not modelled 22.1 12
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator slya;
PDBTitle: crystal structure of transcription regulatory protein slya from2 salmonella typhimurium in complex with salicylate ligands
23c5yrzC_



not modelled 21.5 6
PDB header:antitoxin/hydrolase
Chain: C: PDB Molecule:hicb;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
24c4l5eA_



not modelled 18.7 25
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
25c3eiqC_



not modelled 18.2 15
PDB header:hydrolase/antitumor protein
Chain: C: PDB Molecule:programmed cell death protein 4;
PDBTitle: crystal structure of pdcd4-eif4a
26c2dbbA_



not modelled 17.5 17
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
27c4v0bA_



not modelled 17.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: escherichia coli ftsh hexameric n-domain
28d1ntca_



not modelled 17.2 36
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
29c4pcqC_



not modelled 16.7 32
PDB header:transcription
Chain: C: PDB Molecule:possible transcriptional regulatory protein (probably
PDBTitle: crystal structure of mtbaldr (rv2779c)
30c4ht4A_



not modelled 16.6 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:nicking enzyme;
PDBTitle: molecular basis of vancomycin resistance transfer in staphylococcus2 aureus
31c2ee7A_



not modelled 16.2 22
PDB header:structural protein
Chain: A: PDB Molecule:sperm flagellar protein 1;
PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1
32d1etob_



not modelled 16.1 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
33c2k5eA_



not modelled 16.0 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of putative uncharacterized protein2 gsu1278 from methanocaldococcus jannaschii, northeast3 structural genomics consortium (nesg) target gsr195
34c2e1cA_



not modelled 15.9 16
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
35c2p9xB_



not modelled 14.7 33
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ph0832;
PDBTitle: crystal structure of ph0832 from pyrococcus horikoshii ot3
36d1etxa_



not modelled 13.6 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
37d2cg4a1



not modelled 13.3 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
38c4fx0A_



not modelled 13.2 11
PDB header:transcription regulator
Chain: A: PDB Molecule:probable transcriptional repressor protein;
PDBTitle: crystal structure of m. tuberculosis transcriptional regulator mosr
39c2ijlB_



not modelled 12.2 38
PDB header:transcription
Chain: B: PDB Molecule:molybdenum-binding transcriptional repressor;
PDBTitle: the structure of a putative mode from agrobacterium tumefaciens.
40d2cyya1



not modelled 12.0 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
41c2muyA_



not modelled 11.9 19
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: the solution structure of the ftsh periplasmic n-domain
42c3g3rA_



not modelled 11.7 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:vacuolar transporter chaperone 4;
PDBTitle: crystal structure of a eukaryotic polyphosphate polymerase2 in complex with appnhp-mn2+
43c6bqcA_



not modelled 11.3 23
PDB header:transferase
Chain: A: PDB Molecule:cyclopropane-fatty-acyl-phospholipid synthase;
PDBTitle: cyclopropane fatty acid synthase from e. coli
44c6nd4M_



not modelled 11.1 2
PDB header:ribosome
Chain: M: PDB Molecule:utp10;
PDBTitle: conformational switches control early maturation of the eukaryotic2 small ribosomal subunit
45c1i1gA_



not modelled 10.7 20
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
46c2ia0A_



not modelled 10.7 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative hth-type transcriptional regulator pf0864;
PDBTitle: transcriptional regulatory protein pf0864 from pyrococcus furiosus a2 member of the asnc family (pf0864)
47d2cfxa1



not modelled 10.4 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
48c2xa0A_



not modelled 10.2 15
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide
49c2l4aA_



not modelled 10.0 17
PDB header:dna binding protein
Chain: A: PDB Molecule:leucine responsive regulatory protein;
PDBTitle: nmr structure of the dna-binding domain of e.coli lrp
50d1y0ua_



not modelled 9.7 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ArsR-like transcriptional regulators
51c3jw4C_



not modelled 9.1 9
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator, marr/emrr family;
PDBTitle: the structure of a putative marr family transcriptional regulator from2 clostridium acetobutylicum
52c3g3oA_



not modelled 9.1 16
PDB header:biosynthetic protein
Chain: A: PDB Molecule:vacuolar transporter chaperone 2;
PDBTitle: crystal structure of the cytoplasmic tunnel domain in yeast2 vtc2p
53c5i9eE_



not modelled 8.6 17
PDB header:hydrolase
Chain: E: PDB Molecule:helicase swr1;
PDBTitle: crystal structure of a nuclear actin ternary complex
54c1umqA_



not modelled 7.9 17
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
55d1umqa_



not modelled 7.9 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
56c2cg4B_



not modelled 7.8 20
PDB header:transcription
Chain: B: PDB Molecule:regulatory protein asnc;
PDBTitle: structure of e.coli asnc
57c3vn0D_



not modelled 7.7 31
PDB header:membrane protein
Chain: D: PDB Molecule:voltage-gated hydrogen channel 1;
PDBTitle: crystal structure of a parallel coiled-coil dimerization domain from2 the voltage-gated proton channel (mutation/c245s)
58c4leuA_



not modelled 7.6 17
PDB header:rna binding protein
Chain: A: PDB Molecule:pentatricopeptide repeat-containing protein at3g46870;
PDBTitle: crystal structure of tha8-like protein from arabidopsis thaliana
59d1i1ga1



not modelled 7.3 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
60d2fbia1



not modelled 7.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
61d1g2ha_



not modelled 7.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
62c1g2hA_



not modelled 7.1 16
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
63c2vbzA_



not modelled 7.1 24
PDB header:dna-binding protein
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: feast or famine regulatory protein (rv3291c)from m.2 tuberculosis complexed with l-tryptophan
64c5td6A_



not modelled 6.9 11
PDB header:rna binding protein
Chain: A: PDB Molecule:fog-3 protein;
PDBTitle: c. elegans fog-3 btg/tob domain - h47n, c117a
65c5i9eH_



not modelled 6.9 17
PDB header:hydrolase
Chain: H: PDB Molecule:helicase swr1;
PDBTitle: crystal structure of a nuclear actin ternary complex
66d1pc6a_



not modelled 6.7 13
Fold:NinB
Superfamily:NinB
Family:NinB
67c2cfxD_



not modelled 6.6 8
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
68d1z91a1



not modelled 6.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
69d2hepa1



not modelled 6.4 67
Fold:Long alpha-hairpin
Superfamily:YnzC-like
Family:YznC-like
70c2hepA_



not modelled 6.4 67
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0291 protein ynzc;
PDBTitle: solution nmr structure of the upf0291 protein ynzc from2 bacillus subtilis. northeast structural genomics target3 sr384.
71d2cpta1



not modelled 6.4 19
Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
72c2kgfA_



not modelled 6.3 19
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: n-terminal domain of capsid protein from the mason-pfizer2 monkey virus
73c4b8xB_



not modelled 6.2 15
PDB header:transcription
Chain: B: PDB Molecule:possible marr-transcriptional regulator;
PDBTitle: near atomic resolution crystal structure of sco5413, a marr family2 transcriptional regulator from streptomyces coelicolor
74c2e7xA_



not modelled 6.2 12
PDB header:transcription regulator
Chain: A: PDB Molecule:150aa long hypothetical transcriptional regulator;
PDBTitle: structure of the lrp/asnc like transcriptional regulator from2 sulfolobus tokodaii 7 complexed with its cognate ligand
75d1b9ma1



not modelled 5.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:N-terminal domain of molybdate-dependent transcriptional regulator ModE
76c6a6xC_



not modelled 5.5 33
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
77c5l33A_



not modelled 5.4 28
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
78d2d5ra1



not modelled 5.3 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
79c2gqqB_



not modelled 5.3 17
PDB header:transcription
Chain: B: PDB Molecule:leucine-responsive regulatory protein;
PDBTitle: crystal structure of e. coli leucine-responsive regulatory protein2 (lrp)
80c3cdhB_



not modelled 5.3 12
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, marr family;
PDBTitle: crystal structure of the marr family transcriptional regulator spo14532 from silicibacter pomeroyi dss-3
81c3m03B_



not modelled 5.2 21
PDB header:dna binding protein
Chain: B: PDB Molecule:origin recognition complex subunit 6;
PDBTitle: crystal structure of human orc6 fragment

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