Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1644_(tsnR)_1853613_1854395
DateFri Aug 2 13:30:24 BST 2019
Unique Job IDc976588e64144116
SequenceVLTERSARVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.510 Y:65.116 Z:46.656
Model (left) based on template c1ipaA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase;
PDBTitle: crystal structure of rna 2'-o ribose methyltransferase
Confidence and coverage
Confidence:100.0% Coverage: 97%
253 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1ipaA_



100.0 34
PDB header:transferase
Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase;
PDBTitle: crystal structure of rna 2'-o ribose methyltransferase
2c4x3mB_



100.0 36
PDB header:transferase
Chain: B: PDB Molecule:rna 2'-o ribose methyltransferase;
PDBTitle: crystal structure of ttha0275 from thermus thermophilus (hb8) in2 complex with adenosine in space group p212121
3c5kzkA_



100.0 32
PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna methyltransferase, trmh family;
PDBTitle: crystal structure of rrna methyltransferase from sinorhizobium2 meliloti
4c2i6dA_



100.0 30
PDB header:transferase
Chain: A: PDB Molecule:rna methyltransferase, trmh family;
PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis.
5c3gyqB_



100.0 23
PDB header:transferase
Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase;
PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex
6c1x7pB_



100.0 34
PDB header:transferase
Chain: B: PDB Molecule:rrna methyltransferase;
PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet
7c1gz0H_



100.0 23
PDB header:transferase
Chain: H: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
8c1gz0G_



100.0 23
PDB header:transferase
Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
9d1gz0a1



100.0 23
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
10c5co4A_



100.0 32
PDB header:transferase
Chain: A: PDB Molecule:putative trna (cytidine(34)-2'-o)-methyltransferase;
PDBTitle: structural insights into the 2-oh methylation of c/u34 on trna
11d1ipaa1



100.0 38
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
12c1zjrA_



100.0 25
PDB header:transferase
Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase;
PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme
13d1v2xa_



100.0 33
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
14c2ha8A_



100.0 23
PDB header:rna binding protein
Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein;
PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1
15c4pzkA_



100.0 20
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine(34)-2'-o)-methyltransferase;
PDBTitle: crystal strucrure of putative rna methyltransferase from bacillus2 anthracis.
16d1mxia_



100.0 21
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
17c3onpA_



100.0 24
PDB header:transferase
Chain: A: PDB Molecule:trna/rrna methyltransferase (spou);
PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides
18c3ic6A_



100.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative methylase family protein;
PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae
19c5gm8A_



100.0 26
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: methylation at position 32 of trna catalyzed by trmj alters oxidative2 stress response in pseudomonas aeruiginosa
20c4cngB_



100.0 22
PDB header:transferase
Chain: B: PDB Molecule:spou rrna methylase;
PDBTitle: crystal structure of sulfolobus acidocaldarius trmj in2 complex with s-adenosyl-l-homocysteine
21c3e5yB_



not modelled 100.0 27
PDB header:transferase
Chain: B: PDB Molecule:trmh family rna methyltransferase;
PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei
22c3l8uA_



not modelled 100.0 19
PDB header:transferase
Chain: A: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159
23c5graA_



not modelled 100.0 22
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of trmj from z. mobilis zm4
24c3ktyA_



not modelled 100.0 22
PDB header:transferase
Chain: A: PDB Molecule:probable methyltransferase;
PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i
25c4xboA_



not modelled 100.0 26
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of full length e.coli trmj in complex with sah
26c4cndB_



not modelled 100.0 25
PDB header:transferase
Chain: B: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of e.coli trmj
27c3ilkB_



not modelled 100.0 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380;
PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20
28c3dcmX_



not modelled 99.9 17
PDB header:transferase
Chain: X: PDB Molecule:uncharacterized protein tm_1570;
PDBTitle: crystal structure of the thermotoga maritima spout family rna-2 methyltransferase protein tm1570 in complex with s-adenosyl-l-3 methionine
29d1ipaa2



not modelled 99.9 27
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:RNA 2'-O ribose methyltransferase substrate binding domain
30c6ahwB_



not modelled 99.9 27
PDB header:transferase
Chain: B: PDB Molecule:circular-permutated trna (cytidine(34)-2'-o)-
PDBTitle: crystal structure of circular-permutated yibk methyltransferase from2 haemophilus influenzae
31d1gz0a2



not modelled 98.5 21
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:RNA 2'-O ribose methyltransferase substrate binding domain
32d1gz0f2



not modelled 98.4 22
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:RNA 2'-O ribose methyltransferase substrate binding domain
33c2yy8B_



not modelled 97.1 25
PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
34d1vhka2



not modelled 96.9 13
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
35c1vhkA_



not modelled 96.1 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yqeu;
PDBTitle: crystal structure of an hypothetical protein
36c4l69A_



not modelled 95.8 18
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: rv2372c of mycobacterium tuberculosis is rsme like methyltransferse
37c5vm8A_



not modelled 95.7 14
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of a ribosomal rna small subunit methyltransferase e2 from neisseria gonorrhoeae bound to s-adenosyl methionine
38c3ai9X_



not modelled 95.5 16
PDB header:transferase
Chain: X: PDB Molecule:upf0217 protein mj1640;
PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase
39c1vhyB_



not modelled 94.7 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein hi0303;
PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558
40d2o3aa1



not modelled 94.1 20
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF0751-like
41c3kw2A_



not modelled 93.7 12
PDB header:transferase
Chain: A: PDB Molecule:probable r-rna methyltransferase;
PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis
42c5o96F_



not modelled 93.5 17
PDB header:transferase
Chain: F: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: structure of the putative methyltransferase lpg2936 from legionella2 pneumophila in complex with the bound cofactor sam
43d1nxza2



not modelled 93.5 17
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
44c2zkr6_



not modelled 91.4 9
PDB header:ribosomal protein/rna
Chain: 6: PDB Molecule:60s ribosomal protein l30e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
45c2cx8B_



not modelled 88.7 23
PDB header:transferase
Chain: B: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
46d2vgna3



not modelled 86.6 12
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:ERF1/Dom34 C-terminal domain-like
47c2vgmA_



not modelled 85.4 14
PDB header:cell cycle
Chain: A: PDB Molecule:dom34;
PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay.
48c3zf7g_



not modelled 84.7 11
PDB header:ribosome
Chain: G: PDB Molecule:
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
49c4j3cB_



not modelled 84.3 17
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s ribosomal rna methyltransferase rsme
50c1z85B_



not modelled 82.5 20
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein tm1380;
PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution
51d1x52a1



not modelled 82.1 13
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:ERF1/Dom34 C-terminal domain-like
52d1t0kb_



not modelled 81.1 12
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
53c4e8bA_



not modelled 81.0 20
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s rrna methyltransferase rsme from e.coli
54c4a1dG_



not modelled 80.4 14
PDB header:ribosome
Chain: G: PDB Molecule:rpl30;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4.
55d2qwva1



not modelled 80.2 13
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF1056-like
56c3cpqB_



not modelled 79.6 14
PDB header:ribosomal protein
Chain: B: PDB Molecule:50s ribosomal protein l30e;
PDBTitle: crystal structure of l30e a ribosomal protein from2 methanocaldococcus jannaschii dsm2661 (mj1044)
57c2cx8A_



not modelled 78.5 25
PDB header:transferase
Chain: A: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
58d1dt9a2



not modelled 78.2 18
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:ERF1/Dom34 C-terminal domain-like
59d2bo1a1



not modelled 78.2 12
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
60c3e20C_



not modelled 77.8 18
PDB header:translation
Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: crystal structure of s.pombe erf1/erf3 complex
61d2qi2a3



not modelled 77.3 13
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:ERF1/Dom34 C-terminal domain-like
62c3j21Z_



not modelled 76.9 13
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l30e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
63c3agjD_



not modelled 76.6 21
PDB header:translation/hydrolase
Chain: D: PDB Molecule:protein pelota homolog;
PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex
64d1v6za2



not modelled 74.3 23
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
65d1vqof1



not modelled 74.3 19
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
66c2ktvA_



not modelled 74.3 16
PDB header:translation
Chain: A: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: human erf1 c-domain, "open" conformer
67c3agjB_



not modelled 73.9 21
PDB header:translation/hydrolase
Chain: B: PDB Molecule:protein pelota homolog;
PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex
68c2egwB_



not modelled 73.2 14
PDB header:rna methyltransferase
Chain: B: PDB Molecule:upf0088 protein aq_165;
PDBTitle: crystal structure of rrna methyltransferase with sah ligand
69c3mcaB_



not modelled 72.5 18
PDB header:translation regulation/hydrolase
Chain: B: PDB Molecule:protein dom34;
PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay
70d1jj2f_



not modelled 71.9 20
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
71c3e20H_



not modelled 69.5 18
PDB header:translation
Chain: H: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: crystal structure of s.pombe erf1/erf3 complex
72c3ir9A_



not modelled 68.8 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:peptide chain release factor subunit 1;
PDBTitle: c-terminal domain of peptide chain release factor from methanosarcina2 mazei.
73c1dt9A_



not modelled 66.9 18
PDB header:translation
Chain: A: PDB Molecule:protein (eukaryotic peptide chain release factor
PDBTitle: the crystal structure of human eukaryotic release factor2 erf1-mechanism of stop codon recognition and peptidyl-trna3 hydrolysis
74d2qmma1



not modelled 65.8 19
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF1056-like
75d2fc3a1



not modelled 64.7 29
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
76d1rlga_



not modelled 64.7 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
77c1t9hA_



not modelled 61.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:probable gtpase engc;
PDBTitle: the crystal structure of yloq, a circularly permuted gtpase.
78c3agkA_



not modelled 56.8 25
PDB header:translation
Chain: A: PDB Molecule:peptide chain release factor subunit 1;
PDBTitle: crystal structure of archaeal translation termination factor, arf1
79c3obyB_



not modelled 56.8 12
PDB header:hydrolase
Chain: B: PDB Molecule:protein pelota homolog;
PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity
80d1w41a1



not modelled 56.5 16
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
81c3v7qB_



not modelled 54.3 15
PDB header:rna binding protein
Chain: B: PDB Molecule:probable ribosomal protein ylxq;
PDBTitle: crystal structure of b. subtilis ylxq at 1.55 a resolution
82d2czwa1



not modelled 53.2 22
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
83d1jvna2



not modelled 52.8 10
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
84d2aifa1



not modelled 49.8 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
85d1k3ra2



not modelled 49.6 19
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:Hypothetical protein MTH1 (MT0001), dimerisation domain
86c1k3rA_



not modelled 48.4 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein mt0001;
PDBTitle: crystal structure of the methyltransferase with a knot from2 methanobacterium thermoautotrophicum
87c2qi2A_



not modelled 47.6 13
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein pelota related protein;
PDBTitle: crystal structure of the thermoplasma acidophilum pelota2 protein
88c2lbwA_



not modelled 47.2 17
PDB header:rna binding protein
Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2;
PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant
89d2ozba1



not modelled 45.4 18
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
90c3obwA_



not modelled 44.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:protein pelota homolog;
PDBTitle: crystal structure of two archaeal pelotas reveal inter-domain2 structural plasticity
91c4rg1A_



not modelled 43.5 12
PDB header:transferase
Chain: A: PDB Molecule:c9orf114;
PDBTitle: methyltransferase domain of c9orf114
92c4af1A_



not modelled 43.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:peptide chain release factor subunit 1;
PDBTitle: archeal release factor arf1
93c2yv5A_



not modelled 43.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:yjeq protein;
PDBTitle: crystal structure of yjeq from aquifex aeolicus
94c5ewrA_



not modelled 42.2 19
PDB header:rna binding protein
Chain: A: PDB Molecule:box c/d snornp and u4 snrnp component snu13p;
PDBTitle: c merolae u4 snrnp protein snu13
95c3on1A_



not modelled 38.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2414 protein;
PDBTitle: the structure of a protein with unknown function from bacillus2 halodurans c
96c3o85A_



not modelled 27.7 17
PDB header:ribosomal protein
Chain: A: PDB Molecule:ribosomal protein l7ae;
PDBTitle: giardia lamblia 15.5kd rna binding protein
97c4crnX_



not modelled 26.3 28
PDB header:translation
Chain: X: PDB Molecule:erf1 in ribosome-bound erf1-erf3-gdpnp complex;
PDBTitle: cryo-em of a pretermination complex with erf1 and erf3
98c2v3jA_



not modelled 25.9 13
PDB header:ribosomal protein
Chain: A: PDB Molecule:essential for mitotic growth 1;
PDBTitle: the yeast ribosome synthesis factor emg1 alpha beta knot2 fold methyltransferase
99d1o6da_



not modelled 25.9 31
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YbeA-like
100c3e1yD_



not modelled 25.8 18
PDB header:translation
Chain: D: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: crystal structure of human erf1/erf3 complex
101c4a2iV_



not modelled 23.1 15
PDB header:ribosome/hydrolase
Chain: V: PDB Molecule:putative ribosome biogenesis gtpase rsga;
PDBTitle: cryo-electron microscopy structure of the 30s subunit in complex with2 the yjeq biogenesis factor
102c2rcnA_



not modelled 22.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:probable gtpase engc;
PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium.
103c5xyiM_



not modelled 21.6 16
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein l7ae, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
104c2y0fD_



not modelled 20.6 35
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: structure of gcpe (ispg) from thermus thermophilus hb27

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