Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1645c_(-)_1854406_1855461
DateFri Aug 2 13:30:24 BST 2019
Unique Job IDb84c43f150fbeae5
SequenceMTVASRTSAD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.135 Y:50.844 Z:52.733
Model (left) based on template c5o1mA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
Confidence and coverage
Confidence: 99.2% Coverage: 66%
231 residues ( 66% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o1mA_



99.2 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:rubber oxygenase;
PDBTitle: structure of latex clearing protein lcp in the closed state
2c2ru8A_



31.5 17
PDB header:replication
Chain: A: PDB Molecule:primosomal protein 1;
PDBTitle: dnat c-terminal domain
3c6akmA_



24.9 33
PDB header:protein binding
Chain: A: PDB Molecule:suppressor of ikbke 1;
PDBTitle: crystal structure of slmap-sike1 complex
4c2e8mA_



22.5 18
PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
5c5xazD_



20.7 12
PDB header:dna binding protein
Chain: D: PDB Molecule:gamma-butyrolactone receptor protein;
PDBTitle: crystal structure of full length native tylp, a tetr regulator from2 streptomyces fradiae
6c4ou6A_



17.5 13
PDB header:replication/dna
Chain: A: PDB Molecule:primosomal protein 1;
PDBTitle: crystal structure of dnat84-153-dt10 ssdna complex form 1
7c4wiuA_



17.0 18
PDB header:lyase,transferase
Chain: A: PDB Molecule:phosphoenolpyruvate carboxykinase [gtp];
PDBTitle: crystal structure of pepck (rv0211) from mycobacterium tuberculosis in2 complex with oxalate and mn2+
8d1g73a_



14.4 8
Fold:Spectrin repeat-like
Superfamily:Smac/diablo
Family:Smac/diablo
9c5fcmB_



13.7 30
PDB header:cell cycle
Chain: B: PDB Molecule:basal body protein;
PDBTitle: crbld10-n 1-70
10c1nexC_



13.4 17
PDB header:ligase, cell cycle
Chain: C: PDB Molecule:centromere dna-binding protein complex cbf3
PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
11c1unhD_



13.0 7
PDB header:cell cycle
Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1;
PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin.
12c2ovqA_



12.9 18
PDB header:transcription/cell cycle
Chain: A: PDB Molecule:s-phase kinase-associated protein 1a;
PDBTitle: structure of the skp1-fbw7-cyclinedegc complex
13d1unld_



12.7 7
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
14d1v7ba2



11.9 9
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
15c3m20A_



11.7 20
PDB header:isomerase
Chain: A: PDB Molecule:4-oxalocrotonate tautomerase, putative;
PDBTitle: crystal structure of dmpi from archaeoglobus fulgidus determined to2 2.37 angstroms resolution
16d1u7ka_



11.3 15
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
17c5cuvB_



10.8 18
PDB header:metal binding protein
Chain: B: PDB Molecule:acidocalcisomal pyrophosphatase;
PDBTitle: crystal structure of trypanosoma cruzi vacuolar soluble2 pyrophosphatases in apo form
18c4nk1B_



10.5 11
PDB header:oxygen binding
Chain: B: PDB Molecule:hemoglobin-like protein;
PDBTitle: crystal structure of phosphate-bound hell's gate globin iv
19c3ucsB_



10.4 5
PDB header:chaperone
Chain: B: PDB Molecule:chaperone-modulator protein cbpm;
PDBTitle: crystal structure of the complex between cbpa j-domain and cbpm
20d1fewa_



9.3 8
Fold:Spectrin repeat-like
Superfamily:Smac/diablo
Family:Smac/diablo
21d1gyxa_



not modelled 9.3 19
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
22c3mb2J_



not modelled 9.0 15
PDB header:isomerase
Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
23c2jspA_



not modelled 9.0 21
PDB header:gene regulation
Chain: A: PDB Molecule:transcriptional regulatory protein ros;
PDBTitle: the prokaryotic cys2his2 zinc finger adopts a novel fold as2 revealed by the nmr structure of a. tumefaciens ros dna3 binding domain
24c6alyA_



not modelled 8.4 14
PDB header:transcription
Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 15;
PDBTitle: solution structure of yeast med15 abd2 residues 277-368
25d16vpa_



not modelled 8.2 20
Fold:Conserved core of transcriptional regulatory protein vp16
Superfamily:Conserved core of transcriptional regulatory protein vp16
Family:Conserved core of transcriptional regulatory protein vp16
26c5wylD_



not modelled 7.7 50
PDB header:ribosomal protein/nuclear protein
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of chaetomium thermophilum utp10 n-terminal domain2 in complex with utp17 c-terminal helices
27c4fdxB_



not modelled 7.6 16
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
28c3ivuB_



not modelled 7.5 23
PDB header:transferase
Chain: B: PDB Molecule:homocitrate synthase, mitochondrial;
PDBTitle: homocitrate synthase lys4 bound to 2-og
29c5wylB_



not modelled 7.5 50
PDB header:ribosomal protein/nuclear protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of chaetomium thermophilum utp10 n-terminal domain2 in complex with utp17 c-terminal helices
30d1vfla1



not modelled 6.9 30
Fold:TIM beta/alpha-barrel
Superfamily:Metallo-dependent hydrolases
Family:Adenosine/AMP deaminase
31c6fviA_



not modelled 6.8 46
PDB header:cell cycle
Chain: A: PDB Molecule:centrosomal protein of 192 kda;
PDBTitle: ash / papd-like domain of human cep192 (papd-like domain 7)
32d1iwma_



not modelled 6.5 33
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:Outer membrane lipoprotein receptor LolB
33c5yo8B_



not modelled 6.3 15
PDB header:lyase
Chain: B: PDB Molecule:tetraprenyl-beta-curcumene synthase;
PDBTitle: crystal structure of beta-c25/c30/c35-prene synthase
34c2ormA_



not modelled 6.2 23
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase hp0924;
PDBTitle: crystal structure of the 4-oxalocrotonate tautomerase homologue dmpi2 from helicobacter pylori.
35c4plaA_



not modelled 6.2 23
PDB header:transferase,hydrolase
Chain: A: PDB Molecule:chimera protein of phosphatidylinositol 4-kinase type 2-
PDBTitle: crystal structure of phosphatidyl inositol 4-kinase ii alpha in2 complex with atp
36c2glwA_



not modelled 6.1 23
PDB header:transcription
Chain: A: PDB Molecule:92aa long hypothetical protein;
PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
37c5hwiA_



not modelled 5.9 56
PDB header:transferase
Chain: A: PDB Molecule:glutathione-specific gamma-glutamylcyclotransferase;
PDBTitle: crystal structure of selenomethionine labelled gama glutamyl2 cyclotransferease specific to glutathione from yeast
38d2gica1



not modelled 5.9 26
Fold:Rhabdovirus nucleoprotein-like
Superfamily:Rhabdovirus nucleoprotein-like
Family:Rhabdovirus nucleocapsid protein
39c3kmiB_



not modelled 5.7 19
PDB header:membrane protein
Chain: B: PDB Molecule:putative membrane protein cog4129;
PDBTitle: crystal structure of putative membrane protein from clostridium2 difficile 630
40c2op8A_



not modelled 5.5 23
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
41c3bpjD_



not modelled 5.5 27
PDB header:translation
Chain: D: PDB Molecule:eukaryotic translation initiation factor 3 subunit j;
PDBTitle: crystal structure of human translation initiation factor 3, subunit 12 alpha
42d1lj8a3



not modelled 5.5 22
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Mannitol 2-dehydrogenase
43c6fskA_



not modelled 5.4 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:dyp-type peroxidase;
PDBTitle: f194y mutant of the dye-decolorizing peroxidase (dyp) from pleurotus2 ostreatus
44c4lkbA_



not modelled 5.4 19
PDB header:isomerase
Chain: A: PDB Molecule:hypothetical protein alr4568/putative 4-oxalocrotonate
PDBTitle: crystal structure of a putative 4-oxalocrotonate tautomerase from2 nostoc sp. pcc 7120
45c6j9eF_



not modelled 5.4 15
PDB header:transcription
Chain: F: PDB Molecule:transcription termination/antitermination protein nusa;
PDBTitle: cryo-em structure of xanthomonos oryzae transcription elongation2 complex with nusa and the bacteriophage protein p7
46c4umoB_



not modelled 5.4 26
PDB header:signaling protein
Chain: B: PDB Molecule:potassium voltage-gated channel subfamily kqt member 1;
PDBTitle: crystal structure of the kv7.1 proximal c-terminal domain in complex2 with calmodulin
47c2rpsA_



not modelled 5.4 50
PDB header:immune system
Chain: A: PDB Molecule:chemokine;
PDBTitle: solution structure of a novel insect chemokine isolated from2 integument
48c6ogdB_



not modelled 5.4 10
PDB header:toxin
Chain: B: PDB Molecule:toxin subunit yena2;
PDBTitle: cryo-em structure of yentca in its prepore state
49c3df0C_



not modelled 5.4 27
PDB header:hydrolase
Chain: C: PDB Molecule:calpastatin;
PDBTitle: calcium-dependent complex between m-calpain and calpastatin
50d1o4ua2



not modelled 5.4 9
Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:NadC N-terminal domain-like
51c4pagA_



not modelled 5.4 15
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein;
PDBTitle: abc transporter solute binding protein from sulfurospirillum2 deleyianum dsm 6946
52c4fazB_



not modelled 5.3 23
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate isomerase protein;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
53c5uifC_



not modelled 5.3 28
PDB header:hydrolase
Chain: C: PDB Molecule:ps01740;
PDBTitle: crystal structure of native ps01740
54c3zs9D_



not modelled 5.3 53
PDB header:hydrolase/transport protein
Chain: D: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment
55c5lhxA_



not modelled 5.2 30
PDB header:structural protein
Chain: A: PDB Molecule:serine/threonine-protein kinase plk4;
PDBTitle: pb3 domain of drosophila melanogaster plk4 (sak)
56c1mk2B_



not modelled 5.1 29
PDB header:transcription
Chain: B: PDB Molecule:madh-interacting protein;
PDBTitle: smad3 sbd complex
57c6hwwA_



not modelled 5.1 15
PDB header:viral protein
Chain: A: PDB Molecule:putative gag polyprotein;
PDBTitle: immature mlv capsid hexamer structure in intact virus particles
58d2aala1



not modelled 5.1 21
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MSAD-like
59d1lmia_



not modelled 5.1 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Antigen MPT63/MPB63 (immunoprotective extracellular protein)
Family:Antigen MPT63/MPB63 (immunoprotective extracellular protein)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below