Phyre 2 Results for RVBD1651c_(PE_PGRS30)_1862354

Email	mdejesus@rockefeller.edu
Description	RVBD1651c_(PE_PGRS30)_1862354_1865389
Date	Fri Aug 2 13:30:24 BST 2019
Unique Job ID	55bfdb7964374cac
Sequence	MSFLLVEPDL ... Download FASTA
Job Type	normal
Job Expiry

Summary

Top model

Image coloured by rainbow N → C terminus

Model dimensions (Å):

X:55.477 Y:47.074 Z:2358.894

Model (left) based on template c1ygvA_

Top template information

PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Confidence and coverage

Confidence:

99.6%

Coverage:

61%

616 residues ( 61% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.

Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.

720 residues ( 71%) could be modelled at >90% confidence using multiple-templates.

You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.

Warning: 73% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.

3D viewing

Interactive 3D view in JSmol

For other options to view your downloaded structure offline see the FAQ

Sequence analysis

Download FASTA version

Secondary structure and disorder prediction [Show]

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60

Sequence M S F L L V E P D L V T A A A A N L A G I R S A L S E A A A A A S T P T T A L A S A G A D E V S A A V S R L F G A Y G Q

Secondary structure

SS confidence

Disorder ? ? ?
? ?
? ? ? ? ?
?
? ?

Disorder confidence

. . . . . . . . . 70 . . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120

Sequence Q F Q A L N A R A A T F H A E F V S L L N G G A A A Y T G A E A A S V S S M Q A L L D A V N A P T Q T L L G R P L I G N

Secondary structure

SS confidence

Disorder
? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 130 . . . . . . . . . 140 . . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence G A D G V A G T G S N A G G N G G P G G I L Y G N G G N G G A G G N G G A A G L I G N G G A G G A G G A G G A G G A G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence A G G T G G L L Y G N G G A G G N G G S A A A A G G A G G N A L L F G N G G N G G S G A S G G A A G H A G T I F G N G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280 . . . . . . . . . 290 . . . . . . . . . 300

Sequence N A G A G S G L A G A D G G L F G N G G D G G S S T S K A G G A G G N A L F G N G G D G G S S T V A A G G A G G N T L V

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350 . . . . . . . . . 360

Sequence G N G G A G G A G G T S G L T G S G V A G G A G G S V G L W G S G G A G G D G G A A T S L L G V G M N A G A G G A G G N

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence A G L L Y G N G G A G G A G G N G G D T T V P L F D S G V G G A G G A G G N A S L F G N G G T G G V G G K G G T S S D L

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480

Sequence A S A T S G A G G A G G A G G V G G L L Y G N G G N G G A G G I G G A A I N I L A N A G A G G A G G A A G S S F I G N G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 490 . . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540

Sequence G N G G A G G A G G A A A L F S S G V G G A G G S G G T A L L L G S G G A G G N G G T G G A N S G S L F A S P G G T G G

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 550 . . . . . . . . . 560 . . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600

Sequence A G G H G G A G G L I W G N G G A G G N G G N G G T T A D G A L E G G T G G I G G T G G S A I A F G N G G Q G G A G G T

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630 . . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660

Sequence G G D H S G G N G I G G K G G A S G N G G N A G Q V F G D G G T G G T G G A G G A G S G T K A G G T G S D G G H G G N A

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700 . . . . . . . . . 710 . . . . . . . . . 720

Sequence T L I G N G G D G G A G G A G G A G S P A G A P G N G G T G G T G G V L F G Q S G S S G P P G A A A L A F P S L S S S V

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770 . . . . . . . . . 780

Sequence P I L G P Y E D L I A N T V A N L A S I G N T W L A D P A P F L Q Q Y L A N Q F G Y G Q L T L T A L T D A T R D F A I G

Secondary structure

SS confidence

Disorder ? ?
? ? ? ?
?

Disorder confidence

. . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence L A G I P P S L Q S A L Q A L A A G D V S G A V T D V L G A V V K V F V S G V D A S D L S N I L L L G P V G D L F P I L

Secondary structure

SS confidence

Disorder
?
? ? ? ?
? ? ? ?
? ?
? ?

Disorder confidence

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900

Sequence S I P G A M S Q N F T N V V M T V T D T T I A F S I D T T N L T G V M T F G L P L A M T L N A V G S P I T T A I A F A E

Secondary structure

SS confidence

Disorder ? ? ? ? ? ? ? ?
?
? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 910 . . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960

Sequence S T T A F V S A V Q A G N L Q A A A A A L V G A P A N V A N G F L N G E A R L P L A L P T S A T G G I P V T V E V P V G

Secondary structure

SS confidence

Disorder
? ? ?
?
? ? ? ? ? ? ? ? ? ? ? ?

Disorder confidence

. . . . . . . . . 970 . . . . . . . . . 980 . . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 .

Sequence G I L A P L Q P F Q A T A V I P V I G P V T V T L E G T P A G G I V P A L V N Y A P T Q L A Q A I A P

Secondary structure

SS confidence

Disorder
?
? ? ?
? ? ? ? ? ? ? ?
?
?
? ? ? ?

Disorder confidence

Confidence Key
High(9) Low (0)

? Disordered ( 73%)

Alpha helix ( 26%)

Beta strand ( 3%)

Domain analysis [Show]

Rank Aligned region

PDB 1ygv chain A

3D model

Region: 100 - 721
Aligned: 616
Modelled: 622
Confidence: 99.6%
Identity: 31%
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment

Phyre2

PDB 1y0f chain B

3D model

Region: 123 - 717
Aligned: 584
Modelled: 595
Confidence: 99.0%
Identity: 25%
PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule

Phyre2

PDB 2zj6 chain A

3D model

Region: 3 - 193
Aligned: 191
Modelled: 191
Confidence: 98.9%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase

Phyre2

PDB 3hqv chain B

Region: 98 - 721
Aligned: 621
Modelled: 624
Confidence: 98.9%
Identity: 24%
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement

Phyre2

PDB 2qub chain G

3D model

Region: 9 - 188
Aligned: 180
Modelled: 180
Confidence: 98.8%
Identity: 14%
PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens

Phyre2

PDB 1k7q chain A

3D model

Region: 290 - 694
Aligned: 391
Modelled: 391
Confidence: 98.7%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant

Phyre2

PDB 1jiw chain P

Region: 1 - 173
Aligned: 165
Modelled: 173
Confidence: 98.2%
Identity: 19%
PDB header:hydrolase/hyrolase inhibitor
Chain: P: PDB Molecule:alkaline metalloproteinase;
PDBTitle: crystal structure of the apr-aprin complex

Phyre2

PDB 1kap chain P domain 1

3D model

Region: 26 - 173
Aligned: 136
Modelled: 136
Confidence: 98.2%
Identity: 18%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 2ml3 chain A

Region: 118 - 300
Aligned: 178
Modelled: 183
Confidence: 98.0%
Identity: 19%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r3 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase

Phyre2

PDB 1sat chain A domain 1

3D model

Region: 26 - 173
Aligned: 140
Modelled: 140
Confidence: 97.9%
Identity: 19%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 1k7i chain A domain 1

Region: 34 - 173
Aligned: 140
Modelled: 140
Confidence: 97.8%
Identity: 17%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 1sat chain A

3D model

Region: 9 - 163
Aligned: 133
Modelled: 133
Confidence: 97.8%
Identity: 10%
PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:serratia protease;
PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens

Phyre2

PDB 1g9k chain A domain 1

3D model

Region: 26 - 173
Aligned: 140
Modelled: 148
Confidence: 97.7%
Identity: 21%
Fold: Single-stranded right-handed beta-helix
Superfamily: beta-Roll
Family: Serralysin-like metalloprotease, C-terminal domain

Phyre2

PDB 2agm chain A

Region: 119 - 184
Aligned: 66
Modelled: 66
Confidence: 97.7%
Identity: 21%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4

Phyre2

PDB 1om8 chain A

3D model

Region: 94 - 173
Aligned: 80
Modelled: 80
Confidence: 97.6%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:serralysin;
PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta

Phyre2

PDB 2ml2 chain A

3D model

Region: 109 - 177
Aligned: 69
Modelled: 69
Confidence: 97.6%
Identity: 26%
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r2 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase

Phyre2

PDB 3p4g chain D

3D model

Region: 403 - 656
Aligned: 254
Modelled: 254
Confidence: 97.1%
Identity: 17%
PDB header:antifreeze protein
Chain: D: PDB Molecule:antifreeze protein;
PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium

Phyre2

PDB 2pne chain A

3D model

Region: 614 - 693
Aligned: 80
Modelled: 80
Confidence: 96.9%
Identity: 35%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein

Phyre2

PDB 3boi chain B

3D model

Region: 614 - 693
Aligned: 80
Modelled: 80
Confidence: 96.9%
Identity: 35%
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

PDB 3boi chain A

3D model

Region: 614 - 693
Aligned: 80
Modelled: 80
Confidence: 96.9%
Identity: 35%
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate

Phyre2

1
c1ygvA_

2
c1y0fB_

3
c2zj6A_

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c3hqvB_

5
c2qubG_

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c1k7qA_

7
c1jiwP_

8
d1kapp1

9
c2ml3A_

10
d1sata1

11
d1k7ia1

12
c1satA_

13
d1g9ka1

14
c2agmA_

15
c1om8A_

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c2ml2A_

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c3p4gD_

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c2pneA_

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c3boiB_

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c3boiA_

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