Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1653_(argJ)_1866638_1867852
DateFri Aug 2 13:30:25 BST 2019
Unique Job ID2238ec346c49a61b
SequenceVTDLAGTTRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.704 Y:45.752 Z:66.644
Model (left) based on template d1vz6a_
Top template information
Fold:DmpA/ArgJ-like
Superfamily:DmpA/ArgJ-like
Family:ArgJ-like
Confidence and coverage
Confidence:100.0% Coverage: 93%
374 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1vz6a_
100.0 33
Fold:DmpA/ArgJ-like
Superfamily:DmpA/ArgJ-like
Family:ArgJ-like
2c1vraB_
100.0 35
PDB header:transferase
Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj;
PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
3c3it4B_
100.0 100
PDB header:transferase
Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj
PDBTitle: the crystal structure of ornithine acetyltransferase from2 mycobacterium tuberculosis (rv1653) at 1.7 a
4c2vzkD_
100.0 32
PDB header:transferase
Chain: D: PDB Molecule:glutamate n-acetyltransferase 2 beta chain;
PDBTitle: structure of the acyl-enzyme complex of an n-terminal nucleophile2 (ntn) hydrolase, oat2
5c3it4C_
100.0 100
PDB header:transferase
Chain: C: PDB Molecule:arginine biosynthesis bifunctional protein argj
PDBTitle: the crystal structure of ornithine acetyltransferase from2 mycobacterium tuberculosis (rv1653) at 1.7 a
6c1vraA_
100.0 39
PDB header:transferase
Chain: A: PDB Molecule:arginine biosynthesis bifunctional protein argj;
PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
7c2v4iA_
100.0 34
PDB header:transferase
Chain: A: PDB Molecule:glutamate n-acetyltransferase 2 alpha chain;
PDBTitle: structure of a novel n-acyl-enzyme intermediate of an n-2 terminal nucleophile (ntn) hydrolase, oat2
8d1ohua_
89.6 15
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
9c3s3uB_
82.9 24
PDB header:transferase
Chain: B: PDB Molecule:cysteine transferase;
PDBTitle: crystal structure of uncleaved thnt t282c
10d2ponb1
80.5 19
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
11d1k3ka_
80.3 38
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
12c3n5iC_
78.4 23
PDB header:hydrolase
Chain: C: PDB Molecule:beta-peptidyl aminopeptidase;
PDBTitle: crystal structure of the precursor (s250a mutant) of the n-terminal2 beta-aminopeptidase bapa
13c2vm6A_
77.8 29
PDB header:immune system
Chain: A: PDB Molecule:bcl-2-related protein a1;
PDBTitle: human bcl2-a1 in complex with bim-bh3 peptide
14d2jm6b1
75.0 40
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
15c2vofA_
74.2 24
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-related protein a1;
PDBTitle: structure of mouse a1 bound to the puma bh3-domain
16c5wddA_
73.0 24
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-related ovarian killer protein;
PDBTitle: crystal structure of chicken bok
17c2yv6A_
72.2 33
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2 homologous antagonist/killer;
PDBTitle: crystal structure of human bcl-2 family protein bak
18c3axgN_
71.8 9
PDB header:hydrolase
Chain: N: PDB Molecule:endotype 6-aminohexanoat-oligomer hydrolase;
PDBTitle: structure of 6-aminohexanoate-oligomer hydrolase
19d1b65a_
71.8 25
Fold:DmpA/ArgJ-like
Superfamily:DmpA/ArgJ-like
Family:DmpA-like
20c5tzbA_
71.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:d-aminopeptidase;
PDBTitle: burkholderia sp. beta-aminopeptidase
21d1pq1a_
not modelled 70.4 54
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
22c2kuaA_
not modelled 69.6 16
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 10;
PDBTitle: solution structure of a divergent bcl-2 protein
23d1ysga1
not modelled 69.4 47
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
24c2drhD_
not modelled 69.2 15
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:361aa long hypothetical d-aminopeptidase;
PDBTitle: crystal structure of the ph0078 protein from pyrococcus horikoshii ot3
25d1bxla_
not modelled 69.1 47
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
26c4b4sA_
not modelled 68.9 27
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein 10;
PDBTitle: crystal structure of a pro-survival bcl-2:bim bh3 complex
27c2xa0A_
not modelled 68.8 47
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide
28d1q59a_
not modelled 68.6 47
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
29c2a5yA_
not modelled 67.6 23
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator ced-9;
PDBTitle: structure of a ced-4/ced-9 complex
30c3qbrA_
not modelled 67.4 44
PDB header:apoptosis
Chain: A: PDB Molecule:sjchgc06286 protein;
PDBTitle: bakbh3 in complex with sja
31c2jvfA_
not modelled 66.0 33
PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
32c5wosA_
not modelled 65.6 24
PDB header:viral protein
Chain: A: PDB Molecule:cnpv058 bcl-2 like protein;
PDBTitle: structural and functional insights into canarypox virus cnp0582 regulation of apoptosis
33d1f16a_
not modelled 62.9 54
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
34c5ua4A_
not modelled 62.0 47
PDB header:apoptosis
Chain: A: PDB Molecule:5-hl;
PDBTitle: crystal structure of a179l:bid bh3 complex
35c2o2fA_
not modelled 61.6 47
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand
36d1g5ma_
not modelled 61.3 47
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
37d1o0la_
not modelled 61.3 53
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
38c3pk1A_
not modelled 60.4 38
PDB header:apoptosis/apoptosis regulator
Chain: A: PDB Molecule:induced myeloid leukemia cell differentiation protein mcl-
PDBTitle: crystal structure of mcl-1 in complex with the baxbh3 domain
39c5tzpA_
not modelled 59.9 29
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein fpv039;
PDBTitle: crystal structure of fpv039:bik bh3 complex
40c6h1nA_
not modelled 59.4 47
PDB header:apoptosis
Chain: A: PDB Molecule:bcl2-like 10 (apoptosis facilitator);
PDBTitle: crystal structure of a zebra-fish pro-survival protein nrz-apo
41d1zy3a1
not modelled 58.2 53
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
42c1qysA_
not modelled 57.1 33
PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
43c4bduC_
not modelled 56.3 86
PDB header:apoptosis
Chain: C: PDB Molecule:green fluorescent protein, apoptosis regulator bax;
PDBTitle: bax bh3-in-groove dimer (gfp)
44c4wgiA_
not modelled 53.2 38
PDB header:apoptosis/inhibitor
Chain: A: PDB Molecule:maltose-binding periplasmic protein,induced myeloid
PDBTitle: a single diastereomer of a macrolactam core binds specifically to2 myeloid cell leukemia 1 (mcl1)
45c2du4B_
not modelled 48.8 22
PDB header:ligase/rna
Chain: B: PDB Molecule:o-phosphoseryl-trna synthetase;
PDBTitle: crystal structure of archaeoglobus fulgidus o-phosphoseryl-2 trna synthetase complexed with trnacys
46c5w63A_
not modelled 46.5 54
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bax;
PDBTitle: crystal structure of channel catfish bax
47c1eiyA_
not modelled 43.4 33
PDB header:ligase/rna
Chain: A: PDB Molecule:phenylalanyl-trna synthetase;
PDBTitle: the crystal structure of phenylalanyl-trna synthetase from thermus2 thermophilus complexed with cognate trnaphe
48c3v7nA_
not modelled 43.3 24
PDB header:lyase
Chain: A: PDB Molecule:threonine synthase;
PDBTitle: crystal structure of threonine synthase (thrc) from from burkholderia2 thailandensis
49d1qnaa1
not modelled 38.7 45
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
50c2odrD_
not modelled 38.1 22
PDB header:ligase
Chain: D: PDB Molecule:phosphoseryl-trna synthetase;
PDBTitle: methanococcus maripaludis phosphoseryl-trna synthetase
51c2du3A_
not modelled 37.6 22
PDB header:ligase/rna
Chain: A: PDB Molecule:o-phosphoseryl-trna synthetase;
PDBTitle: crystal structure of archaeoglobus fulgidus o-phosphoseryl-2 trna synthetase complexed with trnacys and o-phosphoserine
52d1aisa1
not modelled 36.6 35
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
53d1cdwa2
not modelled 36.2 30
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
54c5twaA_
not modelled 36.0 41
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-x homologous protein, bhp2;
PDBTitle: crystal structure of geodia cydonium bhp2 in complex with lubomirskia2 baicalensis bak-2
55d1cdwa1
not modelled 35.8 40
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
56d1nh2a1
not modelled 34.9 50
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
57c5wcoC_
not modelled 34.6 56
PDB header:viral protein
Chain: C: PDB Molecule:ns2;
PDBTitle: matrix protein (m1) of infectious salmon anaemia virus
58c2odrC_
not modelled 34.1 22
PDB header:ligase
Chain: C: PDB Molecule:phosphoseryl-trna synthetase;
PDBTitle: methanococcus maripaludis phosphoseryl-trna synthetase
59d1kl7a_
not modelled 33.6 28
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
60c4b0aA_
not modelled 31.8 52
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 1, linker,
PDBTitle: the high-resolution structure of ytbp-ytaf1 identifies2 conserved and competing interaction surfaces in3 transcriptional activation
61c2du7C_
not modelled 31.7 13
PDB header:ligase
Chain: C: PDB Molecule:o-phosphoseryl-trna synthetase;
PDBTitle: crystal structure of methanococcus jannacshii o-phosphoseryl-trna2 synthetase
62d1aisa2
not modelled 31.4 35
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
63c2odrA_
not modelled 29.7 13
PDB header:ligase
Chain: A: PDB Molecule:phosphoseryl-trna synthetase;
PDBTitle: methanococcus maripaludis phosphoseryl-trna synthetase
64c5vmnA_
not modelled 29.7 40
PDB header:viral protein
Chain: A: PDB Molecule:bak protein;
PDBTitle: crystal structure of grouper iridovirus giv66
65d2fiqa1
not modelled 28.6 18
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:GatZ-like
66d1nh2a2
not modelled 27.7 25
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
67c3pcoC_
not modelled 27.5 27
PDB header:ligase
Chain: C: PDB Molecule:phenylalanyl-trna synthetase, alpha subunit;
PDBTitle: crystal structure of e. coli phenylalanine-trna synthetase complexed2 with phenylalanine and amp
68d1mp9a2
not modelled 26.9 35
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
69d1mp9a1
not modelled 26.5 35
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
70c3l4gI_
not modelled 24.5 22
PDB header:ligase
Chain: I: PDB Molecule:phenylalanyl-trna synthetase alpha chain;
PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase
71c4onxB_
not modelled 24.1 15
PDB header:transferase
Chain: B: PDB Molecule:sensor histidine kinase;
PDBTitle: 2.8 angstrom crystal structure of sensor domain of histidine kinase2 from clostridium perfringens.
72c1mp9B_
not modelled 23.2 33
PDB header:dna binding protein
Chain: B: PDB Molecule:tata-binding protein;
PDBTitle: tbp from a mesothermophilic archaeon, sulfolobus acidocaldarius
73d1vb3a1
not modelled 23.0 33
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
74d1qnaa2
not modelled 22.2 30
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
75d1gnta_
not modelled 22.0 16
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Hybrid cluster protein (prismane protein)
76d2i5ua1
not modelled 20.5 22
Fold:DnaD domain-like
Superfamily:DnaD domain-like
Family:DnaD domain
77c5aca1_
not modelled 20.5 33
PDB header:virus
Chain: 1: PDB Molecule:vp1;
PDBTitle: structure-based energetics of protein interfaces guide foot-and-mouth2 disease virus vaccine design
78d1osya_
not modelled 20.3 60
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fungal immunomodulatory protein, FIP
Family:Fungal immunomodulatory protein, FIP
79c3f3hA_
not modelled 19.8 53
PDB header:antitumor protein
Chain: A: PDB Molecule:immunomodulatory protein ling zhi-8;
PDBTitle: crystal structure and anti-tumor activity of lz-8 from the fungus2 ganoderma lucidium
80c5t58N_
not modelled 18.9 11
PDB header:cell cycle
Chain: N: PDB Molecule:klla0c15939p;
PDBTitle: structure of the mind complex shows a regulatory focus of yeast2 kinetochore assembly
81c6pi9A_
not modelled 18.8 20
PDB header:transferase
Chain: A: PDB Molecule:16s rrna (guanine(1405)-n(7))-methyltransferase;
PDBTitle: crystal structure of 16s rrna methylase rmtf in complex with s-2 adenosyl-l-homocysteine
82c3l4gC_
not modelled 18.8 13
PDB header:ligase
Chain: C: PDB Molecule:phenylalanyl-trna synthetase alpha chain;
PDBTitle: crystal structure of homo sapiens cytoplasmic phenylalanyl-trna2 synthetase
83c5xyiB_
not modelled 18.8 7
PDB header:ribosome
Chain: B: PDB Molecule:ribosomal protein s3ae, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
84c1b70A_
not modelled 18.3 33
PDB header:ligase
Chain: A: PDB Molecule:phenylalanyl-trna synthetase;
PDBTitle: phenylalanyl trna synthetase complexed with phenylalanine
85c3eikB_
not modelled 18.2 33
PDB header:transcription
Chain: B: PDB Molecule:tata-box-binding protein;
PDBTitle: double stranded dna binding protein
86c4guaB_
not modelled 17.2 9
PDB header:hydrolase
Chain: B: PDB Molecule:non-structural polyprotein;
PDBTitle: alphavirus p23pro-zbd
87d1yzha1
not modelled 17.0 28
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:TrmB-like
88c2z8uQ_
not modelled 16.4 33
PDB header:transcription
Chain: Q: PDB Molecule:tata-box-binding protein;
PDBTitle: methanococcus jannaschii tbp
89d1r4qa_
not modelled 15.8 21
Fold:Ribosome inactivating proteins (RIP)
Superfamily:Ribosome inactivating proteins (RIP)
Family:Shiga toxin, A-chain
90d1s4ka_
not modelled 15.7 25
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like
91c2odrB_
not modelled 15.4 13
PDB header:ligase
Chain: B: PDB Molecule:phosphoseryl-trna synthetase;
PDBTitle: methanococcus maripaludis phosphoseryl-trna synthetase
92c5fg3A_
not modelled 15.2 30
PDB header:translation
Chain: A: PDB Molecule:probable translation initiation factor if-2;
PDBTitle: crystal structure of gdp-bound aif5b from aeropyrum pernix
93c2r9qD_
not modelled 15.1 9
PDB header:hydrolase
Chain: D: PDB Molecule:2'-deoxycytidine 5'-triphosphate deaminase;
PDBTitle: crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from2 agrobacterium tumefaciens
94c2mvaA_
not modelled 15.1 43
PDB header:toxin
Chain: A: PDB Molecule:rhtx toxin;
PDBTitle: solution structure of the toxin, rhtx
95c3q5xA_
not modelled 15.0 29
PDB header:cell cycle
Chain: A: PDB Molecule:protein cut8;
PDBTitle: structure of proteasome tether
96c1xc0A_
not modelled 15.0 42
PDB header:signaling protein
Chain: A: PDB Molecule:pardaxin p-4;
PDBTitle: twenty lowest energy structures of pa4 by solution nmr
97c4f9dA_
not modelled 15.0 10
PDB header:hydrolase
Chain: A: PDB Molecule:poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase;
PDBTitle: structure of escherichia coli pgab 42-655 in complex with nickel
98d1fmd1_
not modelled 14.6 33
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
99c2wd5B_
not modelled 14.3 27
PDB header:cell cycle
Chain: B: PDB Molecule:structural maintenance of chromosomes protein 3;
PDBTitle: smc hinge heterodimer (mouse)

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