Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1659_(argH)_1872646_1874058
DateFri Aug 2 13:30:25 BST 2019
Unique Job ID014b28b1c3ca1caf
SequenceVSTNEGSLWG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.216 Y:69.160 Z:101.236
Model (left) based on template c6igaB_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of argininosuccinate lyase from mycobacterium2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 97%
455 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6igaB_
100.0 100
PDB header:lyase
Chain: B: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of argininosuccinate lyase from mycobacterium2 tuberculosis
2d1tj7a_
100.0 41
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
3d1i0aa_
100.0 40
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
4d1tjva_
100.0 40
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
5d1k62a_
100.0 42
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
6c6g3eA_
100.0 32
PDB header:lyase
Chain: A: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of edds lyase in complex with formate
7d1hy0a_
100.0 40
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
8c2e9fC_
100.0 43
PDB header:lyase
Chain: C: PDB Molecule:argininosuccinate lyase;
PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine
9c2pfmA_
100.0 18
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis
10d1c3ca_
100.0 16
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
11d1q5na_
100.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
12d1re5a_
100.0 20
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
13c5vkwB_
100.0 17
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase ade13 from candida2 albicans
14d1fuoa_
100.0 23
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
15c3c8tA_
100.0 21
PDB header:lyase
Chain: A: PDB Molecule:fumarate lyase;
PDBTitle: crystal structure of fumarate lyase from mesorhizobium sp. bnc1
16c5xnzA_
100.0 21
PDB header:lyase
Chain: A: PDB Molecule:cred;
PDBTitle: crystal structure of cred complex with fumarate
17c1yfmA_
100.0 19
PDB header:lyase
Chain: A: PDB Molecule:fumarase;
PDBTitle: recombinant yeast fumarase
18d1yfma_
100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
19d1j3ua_
100.0 20
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
20c2vd6B_
100.0 17
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: human adenylosuccinate lyase in complex with its substrate2 n6-(1,2-dicarboxyethyl)-amp, and its products amp and3 fumarate.
21c4nleB_
not modelled 100.0 18
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of apo adenylosuccinate lyase from mycobacterium2 smegmatis
22c3gtdA_
not modelled 100.0 19
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase class ii;
PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii
23c4hgvD_
not modelled 100.0 19
PDB header:lyase
Chain: D: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of a fumarate hydratase
24d1vdka_
not modelled 100.0 20
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
25c6n1mA_
not modelled 100.0 19
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of fumarate hydratase class ii from legionella2 pneumophila philadelphia 1
26c3no9C_
not modelled 100.0 21
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of apo fumarate hydratase from mycobacterium2 tuberculosis
27c4eeiA_
not modelled 100.0 15
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from francisella2 tularensis complexed with amp and succinate
28d1jswa_
not modelled 100.0 17
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
29c3ocfB_
not modelled 100.0 23
PDB header:lyase
Chain: B: PDB Molecule:fumarate lyase:delta crystallin;
PDBTitle: crystal structure of fumarate lyase:delta crystallin from brucella2 melitensis in native form
30c2qgaC_
not modelled 100.0 15
PDB header:lyase
Chain: C: PDB Molecule:adenylosuccinate lyase;
PDBTitle: plasmodium vivax adenylosuccinate lyase pv003765 with amp bound
31c3e04A_
not modelled 100.0 20
PDB header:lyase
Chain: A: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of human fumarate hydratase
32d1jswc_
not modelled 100.0 19
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
33c3bhgA_
not modelled 100.0 16
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from legionella2 pneumophila
34d1dofa_
not modelled 100.0 17
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
35c4hgvC_
not modelled 100.0 18
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase class ii;
PDBTitle: crystal structure of a fumarate hydratase
36c2ptsA_
not modelled 100.0 15
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of wild type escherichia coli adenylosuccinate lyase
37c3gtdB_
not modelled 100.0 19
PDB header:lyase
Chain: B: PDB Molecule:fumarate hydratase class ii;
PDBTitle: 2.4 angstrom crystal structure of fumarate hydratase from rickettsia2 prowazekii
38c3e04C_
not modelled 100.0 21
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of human fumarate hydratase
39c5eyvB_
not modelled 100.0 16
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from schistosoma mansoni2 in apo form.
40c4efcA_
not modelled 100.0 16
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from trypanosoma brucei,2 tb427tmp.160.5560
41c1yisA_
not modelled 100.0 16
PDB header:lyase
Chain: A: PDB Molecule:adenylosuccinate lyase;
PDBTitle: structural genomics of caenorhabditis elegans: adenylosuccinate lyase
42c4mx2C_
not modelled 100.0 18
PDB header:lyase
Chain: C: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from leishmania donovani
43c2fenA_
not modelled 100.0 20
PDB header:isomerase
Chain: A: PDB Molecule:3-carboxy-cis,cis-muconate lactonizing enzyme;
PDBTitle: 3-carboxy-cis,cis-muconate lactonizing enzyme from agrobacterium2 radiobacter s2
44c3r6yG_
not modelled 100.0 18
PDB header:lyase
Chain: G: PDB Molecule:aspartase;
PDBTitle: crystal structure of chymotrypsin-treated aspartase from bacillus sp.2 ym55-1
45d1f1oa_
not modelled 100.0 18
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
46d1yqga1
not modelled 64.8 24
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
47c1x5bA_
not modelled 49.2 25
PDB header:protein binding
Chain: A: PDB Molecule:signal transducing adaptor molecule 2;
PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2
48c2rcyB_
not modelled 45.9 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyrroline carboxylate reductase;
PDBTitle: crystal structure of plasmodium falciparum pyrroline carboxylate2 reductase (mal13p1.284) with nadp bound
49d1u5ta1
not modelled 26.1 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
50c2ctoA_
not modelled 26.0 58
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:novel protein;
PDBTitle: solution structure of the hmg box like domain from human2 hypothetical protein flj14904
51d2di4a1
not modelled 19.9 24
Fold:FtsH protease domain-like
Superfamily:FtsH protease domain-like
Family:FtsH protease domain-like
52c2dd4H_
not modelled 18.9 12
PDB header:hydrolase
Chain: H: PDB Molecule:thiocyanate hydrolase beta subunit;
PDBTitle: thiocyanate hydrolase (scnase) from thiobacillus thioparus recombinant2 apo-enzyme
53c5eulY_
not modelled 18.5 16
PDB header:protein transport
Chain: Y: PDB Molecule:protein translocase subunit secy;
PDBTitle: structure of the seca-secy complex with a translocating polypeptide2 substrate
54c2ag8A_
not modelled 18.1 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrroline-5-carboxylate reductase;
PDBTitle: nadp complex of pyrroline-5-carboxylate reductase from neisseria2 meningitidis
55c1p74B_
not modelled 17.5 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate 5-dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from haemophilus2 influenzae
56c6e8dA_
not modelled 17.4 18
PDB header:dna binding protein
Chain: A: PDB Molecule:beta sliding clamp,dna mismatch repair protein mutl;
PDBTitle: crystal structure of the bacillus subtilis sliding clamp-mutl complex.
57c3exmA_
not modelled 17.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:phosphatase sc4828;
PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp
58c6iczX_
not modelled 16.6 46
PDB header:splicing
Chain: X: PDB Molecule:prkr-interacting protein 1;
PDBTitle: cryo-em structure of a human post-catalytic spliceosome (p complex) at2 3.0 angstrom
59c4omuA_
not modelled 15.7 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from pseudomonas2 putida
60c5z4yB_
not modelled 15.7 7
PDB header:dna binding protein
Chain: B: PDB Molecule:cys regulon transcriptional activator;
PDBTitle: crystal structure of pacysb ntd domain with space group p4
61c3o8qB_
not modelled 15.0 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha;
PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae
62c2xznC_
not modelled 14.9 21
PDB header:ribosome
Chain: C: PDB Molecule:kh domain containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
63c3pgjB_
not modelled 14.0 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate dehydrogenase;
PDBTitle: 2.49 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. n169613 in complex with shikimate
64d1nvta2
not modelled 13.6 14
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
65d2ahra1
not modelled 12.9 23
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
66c2zmeA_
not modelled 12.9 21
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
67c2nloA_
not modelled 12.7 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate dehydrogenase;
PDBTitle: crystal structure of the quinate dehydrogenase from corynebacterium2 glutamicum
68c3fbtB_
not modelled 12.6 14
PDB header:oxidoreductase, lyase
Chain: B: PDB Molecule:chorismate mutase and shikimate 5-dehydrogenase fusion
PDBTitle: crystal structure of a chorismate mutase/shikimate 5-dehydrogenase2 fusion protein from clostridium acetobutylicum
69c3bbnC_
not modelled 12.5 63
PDB header:ribosome
Chain: C: PDB Molecule:ribosomal protein s3;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
70d1vi2a2
not modelled 12.0 15
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
71c2xgvA_
not modelled 11.8 24
PDB header:viral protein
Chain: A: PDB Molecule:psiv capsid n-terminal domain;
PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik)
72c5zdnA_
not modelled 11.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:fomd;
PDBTitle: the complex structure of fomd with cdp
73c3ke2A_
not modelled 11.7 24
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_928783.1;
PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution
74c2digA_
not modelled 11.7 67
PDB header:dna binding protein
Chain: A: PDB Molecule:lamin-b receptor;
PDBTitle: solusion structure of the todor domain of human lamin-b2 receptor
75c3egqB_
not modelled 11.7 11
PDB header:transcription
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (af_1817)2 from archaeoglobus fulgidus at 2.55 a resolution
76c5l3xB_
not modelled 11.5 17
PDB header:transcription
Chain: B: PDB Molecule:negative elongation factor c/d;
PDBTitle: crystal structure of negative elongation factor subcomplex nelf-ac
77d1g3pa2
not modelled 11.0 20
Fold:N-terminal domains of the minor coat protein g3p
Superfamily:N-terminal domains of the minor coat protein g3p
Family:N-terminal domains of the minor coat protein g3p
78c3zeyX_
not modelled 10.8 21
PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein s3, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
79d1npya2
not modelled 10.7 21
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Shikimate dehydrogenase-like
80c2ev9B_
not modelled 10.6 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate 5-dehydrogenase;
PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from thermus2 thermophilus hb8 in complex with nadp(h) and shikimate
81c3gt0A_
not modelled 10.5 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyrroline-5-carboxylate reductase;
PDBTitle: crystal structure of pyrroline 5-carboxylate reductase from bacillus2 cereus. northeast structural genomics consortium target bcr38b
82c3w0kA_
not modelled 10.4 6
PDB header:hydrolase
Chain: A: PDB Molecule:bifunctional endomannanase/endoglucanase;
PDBTitle: crystal structure of a glycoside hydrolase
83c2izzE_
not modelled 10.4 22
PDB header:oxidoreductase
Chain: E: PDB Molecule:pyrroline-5-carboxylate reductase 1;
PDBTitle: crystal structure of human pyrroline-5-carboxylate reductase
84d1dlja1
not modelled 10.3 17
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
85c1u5tA_
not modelled 10.3 19
PDB header:transport protein
Chain: A: PDB Molecule:appears to be functionally related to snf7;
PDBTitle: structure of the escrt-ii endosomal trafficking complex
86c3cuqA_
not modelled 10.2 22
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar-sorting protein snf8;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
87c5dzsA_
not modelled 10.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate dehydrogenase (nadp(+));
PDBTitle: 1.5 angstrom crystal structure of shikimate dehydrogenase 1 from2 peptoclostridium difficile.
88c3izbB_
not modelled 9.7 19
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein rps3 (s3p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
89c1nvtA_
not modelled 9.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate 5'-dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase (aroe or2 mj1084) in complex with nadp+
90c3m1eA_
not modelled 9.6 15
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of benm_dbd
91d1k6ya1
not modelled 9.6 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
92c1nytC_
not modelled 9.3 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:shikimate 5-dehydrogenase;
PDBTitle: shikimate dehydrogenase aroe complexed with nadp+
93d1e8ga1
not modelled 9.2 11
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Vanillyl-alcohol oxidase-like
94d1e0ea_
not modelled 9.1 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
95c2hk8B_
not modelled 8.9 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:shikimate dehydrogenase;
PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution
96c2wukD_
not modelled 8.9 20
PDB header:cell cycle
Chain: D: PDB Molecule:septum site-determining protein diviva;
PDBTitle: diviva n-terminal domain, f17a mutant
97d1wjfa_
not modelled 8.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:N-terminal Zn binding domain of HIV integrase
Family:N-terminal Zn binding domain of HIV integrase
98c3tozA_
not modelled 8.6 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:shikimate dehydrogenase;
PDBTitle: 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from2 listeria monocytogenes in complex with nad.
99c5ybxA_
not modelled 8.6 27
PDB header:dna binding protein
Chain: A: PDB Molecule:bouquet formation protein 4;
PDBTitle: crystal structure of the n-terminal domain of bqt4 in s.pombe

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