Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1678_(-)_1902404_1903306
DateFri Aug 2 13:30:27 BST 2019
Unique Job IDe07df2ea22d1f2e1
SequenceMARVRRGTEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.143 Y:22.275 Z:20.359
Model (left) based on template c3k2kA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:putative carboxypeptidase;
PDBTitle: crystal structure of putative carboxypeptidase (yp_103406.1) from2 burkholderia mallei atcc 23344 at 2.49 a resolution
Confidence and coverage
Confidence: 23.0% Coverage: 7%
20 residues ( 7% of your sequence) have been modelled with 23.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3k2kA_



23.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative carboxypeptidase;
PDBTitle: crystal structure of putative carboxypeptidase (yp_103406.1) from2 burkholderia mallei atcc 23344 at 2.49 a resolution
2c3l2nA_



21.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase m14, carboxypeptidase a;
PDBTitle: crystal structure of putative carboxypeptidase a (yp_562911.1) from2 shewanella denitrificans os-217 at 2.39 a resolution
3c5lnkn_



21.8 25
PDB header:oxidoreductase
Chain: N: PDB Molecule:mitochondrial complex i, nd2 subunit;
PDBTitle: entire ovine respiratory complex i
4c5t2xC_



18.7 22
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein lpg1670;
PDBTitle: crystal structure of uncharacterised protein lpg1670
5c2hntC_



14.7 43
PDB header:serine protease
Chain: C: PDB Molecule:gamma-thrombin;
PDBTitle: crystallographic structure of human gamma-thrombin
6c4ywcA_



14.4 20
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription factor myc3;
PDBTitle: crystal structure of myc3(5-242) fragment in complex with jaz9(218-2 239) peptide
7c4xe4A_



14.1 29
PDB header:blood clotting
Chain: A: PDB Molecule:coagulation factor xii;
PDBTitle: coagulation factor xii protease domain crystal structure
8c4er8A_



13.5 17
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:tnparep for protein;
PDBTitle: structure of the rep associates tyrosine transposase bound to a rep2 hairpin
9c2lcyA_



11.9 10
PDB header:viral protein
Chain: A: PDB Molecule:virion spike glycoprotein;
PDBTitle: nmr structure of the complete internal fusion loop from ebolavirus gp22 at ph 5.5
10c5uqyB_



11.8 12
PDB header:viral protein/immune system
Chain: B: PDB Molecule:envelope glycoprotein gp2;
PDBTitle: crystal structure of marburg virus gp in complex with the human2 survivor antibody mr78
11c2asuB_



11.0 57
PDB header:hydrolase
Chain: B: PDB Molecule:hepatocyte growth factor-like protein;
PDBTitle: crystal structure of the beta-chain of hgfl/msp
12c1q90G_



10.6 75
PDB header:photosynthesis
Chain: G: PDB Molecule:cytochrome b6f complex subunit petg;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
13d1q90g_



10.6 75
Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex
14c5e4vA_



9.8 64
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein,phosphoprotein;
PDBTitle: crystal structure of measles n0-p complex
15d2bs2c1



9.5 18
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Fumarate reductase respiratory complex cytochrome b subunit, FrdC
16c4uftB_



9.3 64
PDB header:rna binding protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: structure of the helical measles virus nucleocapsid
17c4v1lC_



9.2 83
PDB header:sugar binding protein
Chain: C: PDB Molecule:carbohydrate binding module;
PDBTitle: high resolution structure of a novel carbohydrate binding module from2 glycoside hydrolase family 9 (cel9a) from ruminococcus flavefaciens3 fd-1
18c5dz7A_



9.2 18
PDB header:transferase
Chain: A: PDB Molecule:polyketide biosynthesis protein pkse;
PDBTitle: structural basis of acyl transfer in a trans-at polyketide synthase
19d1qmha2



8.8 17
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:RNA 3'-terminal phosphate cyclase, RPTC
20c4o9pC_



8.7 33
PDB header:membrane protein
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit alpha 2;
PDBTitle: crystal structure of thermus thermophilis transhydrogeanse domain ii2 dimer semet derivative
21d1r44a_



not modelled 8.6 14
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:VanX-like
22c5lpeB_



not modelled 8.5 43
PDB header:hydrolase
Chain: B: PDB Molecule:kallikrein-10;
PDBTitle: kallikrein-related peptidase 10 complex with zn2+
23c1eptA_



not modelled 8.5 14
PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:porcine e-trypsin;
PDBTitle: refined 1.8 angstroms resolution crystal structure of2 porcine epsilon-trypsin
24c4o8jB_



not modelled 8.0 13
PDB header:ligase/rna
Chain: B: PDB Molecule:rna 3'-terminal phosphate cyclase;
PDBTitle: crystal structure of rtca, the rna 3'-terminal phosphate cyclase from2 pyrococcus horikoshii, in complex with racaaa3'phosphate and adenine.
25c3csyJ_



not modelled 8.0 11
PDB header:immune system/viral protein
Chain: J: PDB Molecule:envelope glycoprotein gp2;
PDBTitle: crystal structure of the trimeric prefusion ebola virus glycoprotein2 in complex with a neutralizing antibody from a human survivor
26c6hwhX_



not modelled 7.4 25
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
27c4a37A_



not modelled 7.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:metallo-carboxypeptidase;
PDBTitle: metallo-carboxypeptidase from pseudomonas aeruginosa
28c1hiaX_



not modelled 7.2 33
PDB header:complex (protease/inhibitor)
Chain: X: PDB Molecule:kallikrein;
PDBTitle: kallikrein complexed with hirustasin
29c6dexB_



not modelled 7.1 35
PDB header:recombination
Chain: B: PDB Molecule:suppressor of hydroxyurea sensitivity protein 2;
PDBTitle: structure of eremothecium gossypii shu1:shu2 complex
30c1mtnB_



not modelled 7.0 71
PDB header:complex (hydrolase/inhibitor)
Chain: B: PDB Molecule:alpha-chymotrypsin;
PDBTitle: bovine alpha-chymotrypsin:bpti crystallization
31c6cumA_



not modelled 6.9 52
PDB header:transferase
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of a c-terminal proteolytic fragment of a protein2 annotated as an lao/ao transport system atpase but likely meab and3 mmaa-like gtpase from mycobacterium smegmatis
32c4bxsA_



not modelled 6.7 57
PDB header:blood clotting
Chain: A: PDB Molecule:factor x-like protease;
PDBTitle: crystal structure of the prothrombinase complex from the2 venom of pseudonaja textilis
33c2laqA_



not modelled 6.6 100
PDB header:signaling protein
Chain: A: PDB Molecule:accessory gland-specific peptide 70a;
PDBTitle: solution structure of the sex peptide from drosophila melanogaster
34d1q3xa1



not modelled 6.6 57
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Eukaryotic proteases
35c2k9pA_



not modelled 6.6 30
PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles
36d1luaa2



not modelled 6.5 36
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Methylene-tetrahydromethanopterin dehydrogenase
37c3s88J_



not modelled 6.5 13
PDB header:immune system/viral protein
Chain: J: PDB Molecule:envelope glycoprotein;
PDBTitle: crystal structure of sudan ebolavirus glycoprotein (strain gulu) bound2 to 16f6
38d2d8xa2



not modelled 6.5 86
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
39d1kigh_



not modelled 6.4 57
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Eukaryotic proteases
40c3f1sB_



not modelled 6.4 33
PDB header:hydrolase inhibitor/hydrolase
Chain: B: PDB Molecule:vitamin k-dependent protein z;
PDBTitle: crystal structure of protein z complexed with protein z-dependent2 inhibitor
41c5f34A_



not modelled 6.3 25
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannoside acyltransferase;
PDBTitle: crystal structure of membrane associated pata from mycobacterium2 smegmatis in complex with s-hexadecyl coenzyme a - p21 space group
42d1os8a_



not modelled 6.1 43
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Prokaryotic proteases
43c5ldwf_



not modelled 5.8 18
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 1,
PDBTitle: structure of mammalian respiratory complex i, class1
44c5lc5f_



not modelled 5.8 18
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 1,
PDBTitle: structure of mammalian respiratory complex i, class2
45c5yimC_



not modelled 5.7 41
PDB header:transferase
Chain: C: PDB Molecule:sdea;
PDBTitle: structure of a legionella effector
46c6ijo9_



not modelled 5.6 19
PDB header:photosynthesis
Chain: 9: PDB Molecule:lhca9;
PDBTitle: photosystem i of chlamydomonas reinhardtii
47c3w94B_



not modelled 5.5 57
PDB header:hydrolase
Chain: B: PDB Molecule:enteropeptidase-1;
PDBTitle: structure of oryzias latipes enteropeptidase light chain
48c2iu6B_



not modelled 5.5 20
PDB header:transferase
Chain: B: PDB Molecule:dihydroxyacetone kinase;
PDBTitle: regulation of the dha operon of lactococcus lactis
49c2x4yB_



not modelled 5.4 75
PDB header:transcription
Chain: B: PDB Molecule:histone h3.2;
PDBTitle: molecular basis of histone h3k36me3 recognition by the pwwp domain of2 brpf1.
50c1w0zU_



not modelled 5.4 29
PDB header:hydrolase
Chain: U: PDB Molecule:urokinase-type plasminogen activator;
PDBTitle: urokinase type plasminogen activator
51d2hlca_



not modelled 5.4 29
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Eukaryotic proteases
52d2p81a1



not modelled 5.3 60
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
53c2k9iB_



not modelled 5.2 60
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
54c2b9lA_



not modelled 5.2 67
PDB header:immune system/protein binding
Chain: A: PDB Molecule:prophenoloxidase activating factor;
PDBTitle: crystal structure of prophenoloxidase activating factor-ii from the2 beetle holotrichia diomphalia
55c1fiwA_



not modelled 5.2 57
PDB header:hydrolase
Chain: A: PDB Molecule:beta-acrosin heavy chain;
PDBTitle: three-dimensional structure of beta-acrosin from ram spermatozoa
56d1h4wa_



not modelled 5.1 14
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Eukaryotic proteases
57c1bhxB_



not modelled 5.1 43
PDB header:serine protease
Chain: B: PDB Molecule:alpha thrombin;
PDBTitle: x-ray structure of the complex of human alpha thrombin with the2 inhibitor sdz 229-357
58c4u4cB_



not modelled 5.0 43
PDB header:hydrolase
Chain: B: PDB Molecule:protein air2,poly(a) rna polymerase protein 2;
PDBTitle: the molecular architecture of the tramp complex reveals the2 organization and interplay of its two catalytic activities
59c5fcrA_



not modelled 5.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:complement factor d;
PDBTitle: mouse complement factor d

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below