Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1682_(-)_1906410_1907327
DateFri Aug 2 13:30:28 BST 2019
Unique Job ID0698d50772f16874
SequenceVLPQRPNCTK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:371.859 Y:95.216 Z:148.796
Model (left) based on template c1c1gA_
Top template information
PDB header:contractile protein
Chain: A: PDB Molecule:tropomyosin;
PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution in the2 spermine-induced crystal form
Confidence and coverage
Confidence: 97.2% Coverage: 89%
272 residues ( 89% of your sequence) have been modelled with 97.2% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1c1gA_
97.2 11
PDB header:contractile protein
Chain: A: PDB Molecule:tropomyosin;
PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution in the2 spermine-induced crystal form
2c4cgkA_
96.8 9
PDB header:cell cycle
Chain: A: PDB Molecule:secreted 45 kda protein;
PDBTitle: crystal structure of the essential protein pcsb from streptococcus2 pneumoniae
3c3wuqA_
95.4 7
PDB header:motor protein
Chain: A: PDB Molecule:cytoplasmic dynein 1 heavy chain 1;
PDBTitle: structure of the entire stalk region of the dynein motor domain
4c6ewyA_
93.3 18
PDB header:structural protein
Chain: A: PDB Molecule:peptidoglycan endopeptidase ripa;
PDBTitle: ripa peptidoglycan hydrolase (rv1477, mycobacterium tuberculosis) n-2 terminal domain
5c3q8tB_
88.8 11
PDB header:apoptosis
Chain: B: PDB Molecule:beclin-1;
PDBTitle: crystal structure of the coiled coil domain of beclin 1, an essential2 autophagy protein
6c6gqaD_
88.7 30
PDB header:cell cycle
Chain: D: PDB Molecule:cell cycle protein gpsb;
PDBTitle: cell division regulator s. pneumoniae gpsb
7c3u59C_
88.6 14
PDB header:contractile protein
Chain: C: PDB Molecule:tropomyosin beta chain;
PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta
8c1ciiA_
87.1 14
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
9c6e2jB_
86.5 10
PDB header:protein fibril
Chain: B: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between human keratin 1 coil 1b2 containing s233l mutation and wild-type human keratin 10 coil 1b
10c3ojaB_
86.4 10
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
11c4ug1A_
86.0 31
PDB header:cell cycle
Chain: A: PDB Molecule:cell cycle protein gpsb;
PDBTitle: gpsb n-terminal domain
12c4zryA_
84.8 9
PDB header:protein fibril
Chain: A: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between coil 2b domains of2 human intermediate filament proteins keratin 1 (krt1) and keratin 103 (krt10)
13c3ghgK_
84.3 10
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
14c5xg2A_
84.0 12
PDB header:dna binding protein
Chain: A: PDB Molecule:chromosome partition protein smc;
PDBTitle: crystal structure of a coiled-coil segment (residues 345-468 and 694-2 814) of pyrococcus yayanosii smc
15c2wukD_
83.0 24
PDB header:cell cycle
Chain: D: PDB Molecule:septum site-determining protein diviva;
PDBTitle: diviva n-terminal domain, f17a mutant
16c2d3eD_
81.0 6
PDB header:contractile protein
Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain;
PDBTitle: crystal structure of the c-terminal fragment of rabbit skeletal alpha-2 tropomyosin
17c5lm2B_
80.4 7
PDB header:hydrolase
Chain: B: PDB Molecule:tyrosine-protein phosphatase non-receptor type 23;
PDBTitle: crystal structure of hd-ptp phosphatase
18c5wjbA_
79.9 13
PDB header:actin/dna binding protein
Chain: A: PDB Molecule:capsid assembly scaffolding protein,myosin-7;
PDBTitle: crystal structure of amino acids 1733-1797 of human beta cardiac2 myosin fused to gp7
19c3tnuB_
79.1 16
PDB header:cytosolic protein
Chain: B: PDB Molecule:keratin, type ii cytoskeletal 5;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
20c6djlE_
76.8 13
PDB header:signaling protein/protein transport
Chain: E: PDB Molecule:sh3 domain-binding protein 5;
PDBTitle: crystal structure of the rab11 gef sh3bp5 bound to nucleotide free2 rab11a
21c1deqO_
not modelled 75.0 13
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
22c2gl2B_
not modelled 71.6 7
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
23c1ei3E_
not modelled 70.9 4
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
24c5ew5C_
not modelled 70.4 7
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
25c6gapB_
not modelled 70.3 9
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t3d reovirus sigma1 coiled coil tail and body
26c3swkB_
not modelled 69.2 9
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1b fragment
27c5mg8B_
not modelled 66.8 15
PDB header:recombination
Chain: B: PDB Molecule:structural maintenance of chromosomes protein 6;
PDBTitle: crystal structure of the s.pombe smc5/6 hinge domain
28c5bu8A_
not modelled 65.7 11
PDB header:viral protein
Chain: A: PDB Molecule:dna stabilization protein;
PDBTitle: hk620 tail needle crystallized at ph 7.5 and derivatized with xenon
29c4xa1D_
not modelled 65.3 7
PDB header:motor protein
Chain: D: PDB Molecule:gp7-myh7(1173-1238)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 1 of myh7
30c5nnvD_
not modelled 65.2 9
PDB header:cell cycle
Chain: D: PDB Molecule:chromosome partition protein smc,chromosome partition
PDBTitle: structure of a bacillus subtilis smc coiled coil middle fragment
31c3tnuA_
not modelled 64.7 23
PDB header:cytosolic protein
Chain: A: PDB Molecule:keratin, type i cytoskeletal 14;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
32c6a9pD_
not modelled 64.4 9
PDB header:structural protein
Chain: D: PDB Molecule:glial fibrillary acidic protein;
PDBTitle: crystal structure of the human glial fibrillary acidic protein 1b2 domain
33c3wolB_
not modelled 63.5 8
PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidyl aminopeptidase bii;
PDBTitle: crystal structure of the dap bii dipeptide complex i
34c3ojaA_
not modelled 62.6 13
PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex
35c6f1tx_
not modelled 62.5 14
PDB header:motor protein
Chain: X: PDB Molecule:bicd family-like cargo adapter 1,bicd family-like cargo
PDBTitle: cryo-em structure of two dynein tail domains bound to dynactin and2 bicdr1
36c6f1tX_
not modelled 61.3 9
PDB header:motor protein
Chain: X: PDB Molecule:bicd family-like cargo adapter 1,bicd family-like cargo
PDBTitle: cryo-em structure of two dynein tail domains bound to dynactin and2 bicdr1
37c1deqF_
not modelled 60.6 5
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
38c3hnwB_
not modelled 60.3 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750
39c1yvlB_
not modelled 59.8 7
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
40c6ianA_
not modelled 58.1 9
PDB header:cytosolic protein
Chain: A: PDB Molecule:intraflagellar transport protein 74;
PDBTitle: t. brucei ift22/74/81 gtp-bound crystal structure
41c3ol1A_
not modelled 58.1 11
PDB header:structural protein
Chain: A: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b
42c3na7A_
not modelled 55.6 9
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
43c5oi7A_
not modelled 54.1 15
PDB header:protein binding
Chain: A: PDB Molecule:centrosomal protein of 85 kda;
PDBTitle: human cep85 - coiled coil domain 4
44c6ec0A_
not modelled 54.1 7
PDB header:protein fibril
Chain: A: PDB Molecule:keratin 1;
PDBTitle: crystal structure of the wild-type heterocomplex between coil 1b2 domains of human intermediate filament proteins keratin 1 (krt1) and3 keratin 10 (krt10)
45c6gajA_
not modelled 53.6 9
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
46c5cj1B_
not modelled 53.5 14
PDB header:motor protein
Chain: B: PDB Molecule:gp7-myh7-(1526-1571) chimera protein;
PDBTitle: crystal structure of the coiled coil of myh7 residues 1526 to 15712 fused to gp7
47c4ug3C_
not modelled 53.4 26
PDB header:cell cycle
Chain: C: PDB Molecule:cell cycle protein gpsb;
PDBTitle: b. subtilis gpsb n-terminal domain
48c4ll8E_
not modelled 51.4 8
PDB header:motor protein/transport protein
Chain: E: PDB Molecule:swi5-dependent ho expression protein 3;
PDBTitle: complex of carboxy terminal domain of myo4p and she3p middle fragment
49c2qa7C_
not modelled 51.2 13
PDB header:actin binding
Chain: C: PDB Molecule:huntingtin-interacting protein 1;
PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi)
50c6o7xa_
not modelled 50.2 8
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
51c4iloA_
not modelled 48.8 7
PDB header:unknown function
Chain: A: PDB Molecule:ct398;
PDBTitle: 2.12a resolution structure of ct398 from chlamydia trachomatis
52c5t58B_
not modelled 48.2 13
PDB header:cell cycle
Chain: B: PDB Molecule:klla0e05809p;
PDBTitle: structure of the mind complex shows a regulatory focus of yeast2 kinetochore assembly
53c4fmyE_
not modelled 47.4 11
PDB header:viral protein
Chain: E: PDB Molecule:dna stabilization protein;
PDBTitle: hk620 tail needle crystal form i
54c2eqbC_
not modelled 47.2 18
PDB header:endocytosis/exocytosis
Chain: C: PDB Molecule:rab guanine nucleotide exchange factor sec2;
PDBTitle: crystal structure of the rab gtpase sec4p, the sec2p gef2 domain, and phosphate complex
55c1bf5A_
not modelled 46.2 7
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
56c1bg1A_
not modelled 45.9 7
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
57c5yz0C_
not modelled 43.1 10
PDB header:cell cycle
Chain: C: PDB Molecule:atr-interacting protein;
PDBTitle: cryo-em structure of human atr-atrip complex
58c3ghgI_
not modelled 40.6 4
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
59c3vkgA_
not modelled 40.5 10
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of an mtbd truncation mutant of dynein motor domain
60c1hciB_
not modelled 40.3 9
PDB header:triple-helix coiled coil
Chain: B: PDB Molecule:alpha-actinin 2;
PDBTitle: crystal structure of the rod domain of alpha-actinin
61c5nmoA_
not modelled 39.9 11
PDB header:cell cycle
Chain: A: PDB Molecule:chromosome partition protein smc,chromosome partition
PDBTitle: structure of the bacillus subtilis smc joint domain
62c4l1bB_
not modelled 39.4 23
PDB header:signaling protein/transferase/inhibitor
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha;
PDBTitle: crystal structure of p110alpha complexed with nish2 of p85alpha
63c5j1iA_
not modelled 38.9 12
PDB header:structural protein
Chain: A: PDB Molecule:plectin;
PDBTitle: structure of the spectrin repeats 7, 8, and 9 of the plakin domain of2 plectin
64c2fxmB_
not modelled 37.5 6
PDB header:contractile protein
Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform;
PDBTitle: structure of the human beta-myosin s2 fragment
65c4a7fB_
not modelled 37.4 14
PDB header:structural protein/hydrolase
Chain: B: PDB Molecule:tropomyosin 1 alpha;
PDBTitle: structure of the actin-tropomyosin-myosin complex (rigor atm 3)
66c6o7ua_
not modelled 36.6 7
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
67c2xdjC_
not modelled 34.5 9
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein ybgf;
PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf
68c5cwsC_
not modelled 33.1 10
PDB header:protein transport
Chain: C: PDB Molecule:nucleoporin nsp1;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
69c4xa3A_
not modelled 32.9 10
PDB header:motor protein
Chain: A: PDB Molecule:gp7-myh7(1361-1425)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 2 of myh7
70c5ijnT_
not modelled 31.4 5
PDB header:transport protein
Chain: T: PDB Molecule:nuclear pore glycoprotein p62;
PDBTitle: composite structure of the inner ring of the human nuclear pore2 complex (32 copies of nup205)
71c2jeeA_
not modelled 29.7 19
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein zapb;
PDBTitle: xray structure of e. coli yiiu
72c3o0zD_
not modelled 28.5 9
PDB header:transferase
Chain: D: PDB Molecule:rho-associated protein kinase 1;
PDBTitle: crystal structure of a coiled-coil domain from human rock i
73c4jzlA_
not modelled 27.8 16
PDB header:apoptosis, transport protein
Chain: A: PDB Molecule:b-cell receptor-associated protein 31;
PDBTitle: crystal structure of bap31 vded at alkaline ph
74c1sjjB_
not modelled 26.9 10
PDB header:contractile protein
Chain: B: PDB Molecule:actinin;
PDBTitle: cryo-em structure of chicken gizzard smooth muscle alpha-actinin
75c1deqD_
not modelled 25.4 8
PDB header:blood clotting
Chain: D: PDB Molecule:fibrinogen (alpha chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
76c5jxpA_
not modelled 24.6 8
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
77c2efrB_
not modelled 24.5 14
PDB header:contractile protein
Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain;
PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution
78c6flnE_
not modelled 22.5 9
PDB header:protein binding
Chain: E: PDB Molecule:e3 ubiquitin/isg15 ligase trim25;
PDBTitle: crystal structure of the human trim25 coiled-coil and pryspry domains
79c5lskB_
not modelled 22.4 12
PDB header:cell cycle
Chain: B: PDB Molecule:polyamine-modulated factor 1;
PDBTitle: crystal structure of the human kinetochore mis12-cenp-c complex
80c1gd2G_
not modelled 22.3 10
PDB header:transcription/dna
Chain: G: PDB Molecule:transcription factor pap1;
PDBTitle: crystal structure of bzip transcription factor pap1 bound2 to dna
81c3a7pB_
not modelled 22.3 21
PDB header:protein transport
Chain: B: PDB Molecule:autophagy protein 16;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg16
82c2b9cA_
not modelled 21.8 15
PDB header:contractile protein
Chain: A: PDB Molecule:striated-muscle alpha tropomyosin;
PDBTitle: structure of tropomyosin's mid-region: bending and binding sites for2 actin
83c1jchC_
not modelled 21.7 9
PDB header:ribosome inhibitor, hydrolase
Chain: C: PDB Molecule:colicin e3;
PDBTitle: crystal structure of colicin e3 in complex with its immunity protein
84c6gaoC_
not modelled 21.5 8
PDB header:viral protein
Chain: C: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail and body
85c3u1aC_
not modelled 21.2 10
PDB header:contractile protein
Chain: C: PDB Molecule:smooth muscle tropomyosin alpha;
PDBTitle: n-terminal 81-aa fragment of smooth muscle tropomyosin alpha
86c5k7bA_
not modelled 20.2 10
PDB header:apoptosis
Chain: A: PDB Molecule:beclin-2;
PDBTitle: beclin 2 ccd homodimer
87c1ei3C_
not modelled 19.3 8
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
88c4pxjB_
not modelled 18.7 20
PDB header:protein binding
Chain: B: PDB Molecule:c-jun-amino-terminal kinase-interacting protein 3;
PDBTitle: crystallographic structure of the lzii fragment (anti-parallel2 orientation) from jip3
89c3cveC_
not modelled 18.4 23
PDB header:signaling protein
Chain: C: PDB Molecule:homer protein homolog 1;
PDBTitle: crystal structure of the carboxy terminus of homer1
90c3m9bK_
not modelled 17.9 12
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
91c4rsiB_
not modelled 17.1 15
PDB header:cell cycle
Chain: B: PDB Molecule:structural maintenance of chromosomes protein 4;
PDBTitle: yeast smc2-smc4 hinge domain with extended coiled coils
92c2v71A_
not modelled 16.8 11
PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear distribution protein nude-like 1;
PDBTitle: coiled-coil region of nudel
93c2no2A_
not modelled 16.2 14
PDB header:cell adhesion
Chain: A: PDB Molecule:huntingtin-interacting protein 1;
PDBTitle: crystal structure of the dllrkn-containing coiled-coil2 domain of huntingtin-interacting protein 1
94c4h22A_
not modelled 16.1 12
PDB header:transcription
Chain: A: PDB Molecule:leucine-rich repeat flightless-interacting protein 1;
PDBTitle: crystal structure of the dimeric coiled-coil domain of the cytosolic2 nucleic acid sensor lrrfip1
95c3m06F_
not modelled 14.9 11
PDB header:protein binding
Chain: F: PDB Molecule:tnf receptor-associated factor 2;
PDBTitle: crystal structure of traf2
96c2qa7B_
not modelled 14.9 20
PDB header:actin binding
Chain: B: PDB Molecule:huntingtin-interacting protein 1;
PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi)
97c5tvbB_
not modelled 14.8 8
PDB header:transferase
Chain: B: PDB Molecule:nucleoprotein tpr;
PDBTitle: structure of the tpr oligomerization domain
98c2xdjF_
not modelled 14.4 10
PDB header:unknown function
Chain: F: PDB Molecule:uncharacterized protein ybgf;
PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf
99d1an2a_
not modelled 14.0 24
Fold:HLH-like
Superfamily:HLH, helix-loop-helix DNA-binding domain
Family:HLH, helix-loop-helix DNA-binding domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite