Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1700_(-)_1925589_1926212
DateFri Aug 2 13:30:30 BST 2019
Unique Job IDb9e8e2ea0a2cadbc
SequenceVAEHDFETIS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.954 Y:49.994 Z:62.760
Model (left) based on template d1mqea_
Top template information
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
Confidence and coverage
Confidence:100.0% Coverage: 90%
187 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1mqea_



100.0 97
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
2c5c7tB_



100.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:nudf protein;
PDBTitle: crystal structure of the bdellovibrio bacteriovorus nucleoside2 diphosphate sugar hydrolase in complex with adp-ribose
3d1vhza_



100.0 18
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
4d1g0sa_



100.0 24
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
5c2yvoA_



100.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8
6d1viua_



100.0 23
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
7c3bm4B_



100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:adp-sugar pyrophosphatase;
PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt5 in complex2 with magnesium and ampcpr
8d1v8ya_



100.0 38
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
9c2w4eA_



100.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans
10c3q91D_



100.0 18
PDB header:hydrolase
Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase;
PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14)
11d1sjya_



99.9 18
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
12c6o3pA_



99.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:peroxisomal nadh pyrophosphatase nudt12;
PDBTitle: crystal structure of the catalytic domain of mouse nudt12 in complex2 with amp and 3 mg2+ ions
13c5gg7A_



99.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family protein;
PDBTitle: crystal structure of mycobacterium smegmatis mutt1 in complex with 8-2 oxo-dgtp, 8-oxo-dgmp and pyrophosphate (i)
14c3fjyB_



99.8 18
PDB header:hydrolase
Chain: B: PDB Molecule:probable mutt1 protein;
PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis
15d2fkba1



99.8 17
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
16d1vk6a2



99.8 20
Fold:Nudix
Superfamily:Nudix
Family:NADH pyrophosphatase
17d2o5fa1



99.8 15
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
18d2b0va1



99.8 15
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
19c5lopA_



99.8 15
PDB header:rna binding protein
Chain: A: PDB Molecule:klla0f23980p;
PDBTitle: structure of the active form of /k. lactis/ dcp1-dcp2-edc3 decapping2 complex bound to m7gdp
20c2jvbA_



99.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2;
PDBTitle: solution structure of catalytic domain of ydcp2
21c5mp0D_



not modelled 99.8 22
PDB header:hydrolase
Chain: D: PDB Molecule:m7gpppn-mrna hydrolase;
PDBTitle: human m7gpppn-mrna hydrolase (dcp2, nudt20) catalytic domain
22c4jztA_



not modelled 99.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:dgtp pyrophosphohydrolase;
PDBTitle: crystal structure of the bacillus subtilis pyrophosphohydrolase bsrpph2 (e68a mutant) bound to gtp
23c2gb5B_



not modelled 99.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
24c3dkuB_



not modelled 99.8 21
PDB header:hydrolase
Chain: B: PDB Molecule:putative phosphohydrolase;
PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from escherichia2 coli k-1
25c4kyxA_



not modelled 99.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribose pyrophosphatase mutt;
PDBTitle: crystal structure of adp-ribose pyrophosphatase mutt from rickettsia2 felis
26c2rrkA_



not modelled 99.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:ctp pyrophosphohydrolase;
PDBTitle: solution structure of the e. coli orf135 protein
27c3gg6A_



not modelled 99.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18;
PDBTitle: crystal structure of the nudix domain of human nudt18
28c4zbpC_



not modelled 99.8 22
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase 7;
PDBTitle: crystal structure of the ampcpr-bound atnudt7
29d1nqza_



not modelled 99.8 22
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
30c2r5wA_



not modelled 99.8 21
PDB header:hydrolase, transferase
Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase;
PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis
31c2kdvA_



not modelled 99.8 26
PDB header:hydrolase
Chain: A: PDB Molecule:rna pyrophosphohydrolase;
PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli
32c3h95A_



not modelled 99.8 24
PDB header:gene regulation
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6;
PDBTitle: crystal structure of the nudix domain of nudt6
33c2fvvA_



not modelled 99.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase 1;
PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1
34d2fvva1



not modelled 99.8 20
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
35c3hhjA_



not modelled 99.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: crystal structure of mutator mutt from bartonella henselae
36c3grnB_



not modelled 99.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:mutt related protein;
PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1
37d1vcda1



not modelled 99.7 21
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
38c4dywA_



not modelled 99.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt nudix hydrolase from burkholderia2 pseudomallei
39d1ryaa_



not modelled 99.7 16
Fold:Nudix
Superfamily:Nudix
Family:GDP-mannose mannosyl hydrolase NudD
40d1jkna_



not modelled 99.7 20
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
41c5zrhA_



not modelled 99.7 26
PDB header:hydrolase
Chain: A: PDB Molecule:putative mutator protein mutt2/nudix hydrolase;
PDBTitle: m. smegmatis antimutator protein mutt2 in complex with cmp
42c2o1cB_



not modelled 99.7 18
PDB header:hydrolase
Chain: B: PDB Molecule:datp pyrophosphohydrolase;
PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase
43c2pq1B_



not modelled 99.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:ap4a hydrolase;
PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5
44c5gp0F_



not modelled 99.7 25
PDB header:hydrolase
Chain: F: PDB Molecule:nudix hydrolase 1;
PDBTitle: crystal structure of geraniol-nudx1 complex
45c3id9B_



not modelled 99.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis
46c3exqA_



not modelled 99.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:nudix family hydrolase;
PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis
47c3cngC_



not modelled 99.7 15
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
48c3gwyA_



not modelled 99.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase;
PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis
49c5bonC_



not modelled 99.7 20
PDB header:hydrolase
Chain: C: PDB Molecule:probable 8-oxo-dgtp diphosphatase nudt15;
PDBTitle: crystal structure of human nudt15 (mth2)
50c3o8sA_



not modelled 99.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:adp-ribose pyrophosphatase;
PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution
51d2a6ta2



not modelled 99.7 19
Fold:Nudix
Superfamily:Nudix
Family:mRNA decapping enzyme-like
52c5x1xA_



not modelled 99.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: solution nmr structure of dna mismatch repair protein mutt (family2 nudix hydrolase) from methicillin resistant staphylococcus aureus 252
53d1ppva_



not modelled 99.7 12
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
54d1ktga_



not modelled 99.7 20
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
55c3sonB_



not modelled 99.7 15
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical nudix hydrolase;
PDBTitle: crystal structure of a putativel nudix hydrolase (lmof2365_2679) from2 listeria monocytogenes str. 4b f2365 at 1.70 a resolution
56c3ef5A_



not modelled 99.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:probable pyrophosphohydrolase;
PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp
57c2qkmF_



not modelled 99.7 21
PDB header:hydrolase
Chain: F: PDB Molecule:spac19a8.12 protein;
PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex
58d1hzta_



not modelled 99.7 12
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
59d2azwa1



not modelled 99.7 17
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
60d1puna_



not modelled 99.7 18
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
61d1irya_



not modelled 99.7 22
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
62c2qjoB_



not modelled 99.7 17
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase;
PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp.
63c4v14A_



not modelled 99.7 28
PDB header:hydrolase
Chain: A: PDB Molecule:mutator mutt protein;
PDBTitle: structure and function analysis of mutt from the2 psychrofile fish pathogen aliivibrio salmonicida and the3 mesophile vibrio cholerae
64c3gz8C_



not modelled 99.7 19
PDB header:dna binding protein
Chain: C: PDB Molecule:mutt/nudix family protein;
PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis nrtr2 complexed with adp ribose
65d2b06a1



not modelled 99.7 17
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
66c3i9xA_



not modelled 99.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua
67d1xsba_



not modelled 99.7 19
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
68c5lf8A_



not modelled 99.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 17;
PDBTitle: human nucleoside diphosphate-linked moiety x motif 17 (nudt17)
69d2fb1a2



not modelled 99.7 15
Fold:Nudix
Superfamily:Nudix
Family:BT0354 N-terminal domain-like
70c5cfiC_



not modelled 99.7 21
PDB header:hydrolase
Chain: C: PDB Molecule:bis(5'-nucleosyl)-tetraphosphatase (diadenosine
PDBTitle: structural and functional attributes of malaria parasite ap4a2 hydrolase
71c2pqvA_



not modelled 99.7 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae
72c3q4iA_



not modelled 99.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein);
PDBTitle: crystal structure of cdp-chase in complex with gd3+
73c3r03B_



not modelled 99.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:nudix hydrolase;
PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum
74c4hfqB_



not modelled 99.6 19
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of udp-x diphosphatase
75c3e57A_



not modelled 99.6 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein tm1382;
PDBTitle: crystal structure of tm1382, a putative nudix hydrolase
76c4ilqA_



not modelled 99.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:ct771;
PDBTitle: 2.60a resolution structure of ct771 from chlamydia trachomatis
77c2yyhC_



not modelled 99.6 22
PDB header:hydrolase
Chain: C: PDB Molecule:8-oxo-dgtpase domain;
PDBTitle: crystal structure of nudix family protein from aquifex aeolicus
78c3n77B_



not modelled 99.6 15
PDB header:hydrolase
Chain: B: PDB Molecule:nucleoside triphosphatase nudi;
PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2
79c3fk9B_



not modelled 99.6 19
PDB header:hydrolase
Chain: B: PDB Molecule:mutator mutt protein;
PDBTitle: crystal structure of mmutator mutt protein from bacillus halodurans
80c3fcmA_



not modelled 99.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family;
PDBTitle: crystal structure of a nudix hydrolase from clostridium perfringens
81c3edsA_



not modelled 99.6 28
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis
82c5t3pB_



not modelled 99.6 18
PDB header:hydrolase
Chain: B: PDB Molecule:peroxisomal coenzyme a diphosphatase nudt7;
PDBTitle: crystal structure of human peroxisomal coenzyme a diphosphatase nudt7
83c3f6aA_



not modelled 99.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family;
PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens
84c3gz6A_



not modelled 99.5 18
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of shewanella oneidensis nrtr complexed with a 27mer2 dna
85d1k2ea_



not modelled 99.5 17
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
86c2fb1A_



not modelled 99.5 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron
87c2i6kA_



not modelled 99.5 12
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1;
PDBTitle: crystal structure of human type i ipp isomerase complexed with a2 substrate analog
88d2fmla2



not modelled 99.5 17
Fold:Nudix
Superfamily:Nudix
Family:BT0354 N-terminal domain-like
89c3f13A_



not modelled 99.5 24
PDB header:hydrolase
Chain: A: PDB Molecule:putative nudix hydrolase family member;
PDBTitle: crystal structure of putative nudix hydrolase family member from2 chromobacterium violaceum
90c3rh7A_



not modelled 99.4 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution
91c2pnyA_



not modelled 99.4 15
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2;
PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2
92c2fmlB_



not modelled 99.4 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis
93d1x51a1



not modelled 99.3 14
Fold:Nudix
Superfamily:Nudix
Family:MutY C-terminal domain-like
94c3dupB_



not modelled 99.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:mutt/nudix family protein;
PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170
95c1rrqA_



not modelled 99.3 23
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
96c3qsjA_



not modelled 99.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius
97d1q33a_



not modelled 99.2 16
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
98d1rrqa2



not modelled 99.1 21
Fold:Nudix
Superfamily:Nudix
Family:MutY C-terminal domain-like
99d1u20a1



not modelled 99.1 17
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
100c4v1aj_



not modelled 99.1 19
PDB header:ribosome
Chain: J: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
101c2j8qB_



not modelled 99.0 17
PDB header:nuclear protein
Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5;
PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion.
102c5lf9A_



not modelled 99.0 13
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 22;
PDBTitle: crystal structure of human nudt22
103c3couA_



not modelled 98.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16;
PDBTitle: crystal structure of human nudix motif 16 (nudt16)
104c3kvhA_



not modelled 97.8 16
PDB header:rna binding protein
Chain: A: PDB Molecule:protein syndesmos;
PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein)
105c1vw46_



not modelled 95.7 26
PDB header:ribosome
Chain: 6: PDB Molecule:54s ribosomal protein l17, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
106c3p5tE_



not modelled 90.9 22
PDB header:rna binding protein
Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5;
PDBTitle: cfim25-cfim68 complex
107c4ktbA_



not modelled 81.2 17
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of posible asymmetric diadenosine tetraphosphate2 (ap(4)a) hydrolases from jonesia denitrificans dsm 20603
108c5mu7B_



not modelled 49.7 11
PDB header:protein transport
Chain: B: PDB Molecule:coatomer subunit delta-like protein;
PDBTitle: crystal structure of the beta/delta-copi core complex
109c5a1vP_



not modelled 47.1 16
PDB header:transport protein
Chain: P: PDB Molecule:coatomer subunit delta;
PDBTitle: the structure of the copi coat linkage i
110c1w63T_



not modelled 34.9 14
PDB header:endocytosis
Chain: T: PDB Molecule:adapter-related protein complex 1 sigma 1a subunit;
PDBTitle: ap1 clathrin adaptor core
111d1gw5s_



not modelled 31.3 16
Fold:Profilin-like
Superfamily:SNARE-like
Family:Clathrin coat assembly domain
112c5nzvN_



not modelled 29.4 16
PDB header:transport protein
Chain: N: PDB Molecule:coatomer subunit delta;
PDBTitle: the structure of the copi coat linkage iv
113c2hf6A_



not modelled 26.0 30
PDB header:protein transport
Chain: A: PDB Molecule:coatomer subunit zeta-1;
PDBTitle: solution structure of human zeta-cop
114d2dexx3



not modelled 24.2 18
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain
115c6ce1A_



not modelled 22.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:protein-arginine deiminase type-3;
PDBTitle: crystal structure of peptidyl arginine deiminase type iii (padi3)
116c5a1yH_



not modelled 21.8 17
PDB header:transport protein
Chain: H: PDB Molecule:coatomer subunit delta;
PDBTitle: the structure of the copi coat linkage iv

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