Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1702c_(-)_1927218_1928582
DateFri Aug 2 13:30:30 BST 2019
Unique Job IDfa34f5f4b2935643
SequenceMYSSSREEAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.660 Y:29.574 Z:35.806
Model (left) based on template c2qgpA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
Confidence and coverage
Confidence: 99.1% Coverage: 14%
65 residues ( 14% of your sequence) have been modelled with 99.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qgpA_



99.1 12
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
2c6ghcA_



98.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:5-methylcytosine-specific restriction enzyme a;
PDBTitle: modification dependent ecokmcra restriction endonuclease
3c5mkwA_



98.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:dna annealing helicase and endonuclease zranb3;
PDBTitle: crystal structure of the human zranb3 hnh domain
4c5x1hS_



98.6 15
PDB header:protein transport
Chain: S: PDB Molecule:icmj (dotn);
PDBTitle: structure of legionella pneumophila dotn
5c5vgbA_



98.2 21
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of nmecas9 hnh domain bound to anti-crispr acriic1
6c5h0mA_



98.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: crystal structure of deep-sea thermophilic bacteriophage gve2 hnh2 endonuclease with zinc ion
7c5zmmD_



97.8 24
PDB header:dna binding protein
Chain: D: PDB Molecule:uncharacterized protein mcra;
PDBTitle: structure of the type iv phosphorothioation-dependent restriction2 endonuclease scomcra
8c4ogeA_



97.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease domain protein;
PDBTitle: crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
9c5axwA_



96.9 13
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
10c6ghsA_



94.8 12
PDB header:hydrolase
Chain: A: PDB Molecule:tagi restriction endonuclease;
PDBTitle: modification dependent tagi restriction endonuclease
11c4cmqB_



85.8 14
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endonuclease cas9/csn1;
PDBTitle: crystal structure of mn-bound s.pyogenes cas9
12d2gykb1



85.1 24
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
13d2jb0b1



77.6 19
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
14c4qkoH_



56.1 19
PDB header:antimicrobial protein
Chain: H: PDB Molecule:pyocin-s2;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
15c5g2xC_



54.7 22
PDB header:transferase
Chain: C: PDB Molecule:group ii intron-encoded protein ltra;
PDBTitle: structure a of group ii intron complexed with its reverse2 transcriptase
16c7ceiB_



52.2 19
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
17c5ew5C_



51.7 22
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
18c4uhpA_



51.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
19d2dlka1



47.7 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
20c3mkzU_



47.7 24
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
21c3mkyP_



not modelled 44.6 23
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
22d1a1ga1



not modelled 38.7 21
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
23d1zfda_



not modelled 37.7 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
24c1va1A_



not modelled 34.8 25
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1)
25d1a1ia1



not modelled 33.9 21
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
26d1ncsa_



not modelled 33.4 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
27c2b8tA_



not modelled 31.9 14
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: crystal structure of thymidine kinase from u.urealyticum in complex2 with thymidine
28c3plwA_



not modelled 31.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:recombination enhancement function protein;
PDBTitle: ref protein from p1 bacteriophage
29d2glia4



not modelled 31.2 22
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
30d1u86a1



not modelled 28.3 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
31d1vz0a1



not modelled 28.0 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
32d1a1ha1



not modelled 27.2 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
33d1tf3a2



not modelled 27.1 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
34d1ubdc3



not modelled 26.0 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
35d1f2ig1



not modelled 25.6 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
36d1aaya1



not modelled 25.5 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
37d1sp2a_



not modelled 25.2 17
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
38d2glia3



not modelled 24.4 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
39d1ejga_



not modelled 23.1 18
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
40d2b8ta2



not modelled 23.0 21
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
41d2dlka2



not modelled 23.0 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
42c1pxeA_



not modelled 22.3 36
PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1
43d1bhia_



not modelled 21.9 21
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
44d1jmna_



not modelled 20.6 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
45d1ubdc4



not modelled 20.2 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
46d1w6ga1



not modelled 19.4 22
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
47d2glia5



not modelled 19.0 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
48c3cwbQ_



not modelled 18.0 16
PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
49d2ysca1



not modelled 17.9 29
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
50d1tf6a1



not modelled 17.2 44
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
51c1nbwA_



not modelled 17.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit;
PDBTitle: glycerol dehydratase reactivase
52d1tf3a1



not modelled 16.2 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
53c4ttnA_



not modelled 15.0 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
54c4ttoA_



not modelled 14.9 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
55c4ttmA_



not modelled 14.8 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
56d1pt4a_



not modelled 14.8 33
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
57d1n1ua_



not modelled 14.7 22
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
58c1n1uA_



not modelled 14.7 22
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
59c2khbA_



not modelled 14.6 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
60c2f2iA_



not modelled 14.5 33
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
61c2mn1A_



not modelled 14.4 33
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
62d1nbla_



not modelled 13.9 30
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
63c5yixB_



not modelled 13.8 23
PDB header:dna binding protein
Chain: B: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra sigma-interacting domain (sid) in complex2 with domain 2 of sigma 70
64d1orla_



not modelled 13.5 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
65d1w2za1



not modelled 13.5 16
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
66c6dhrA_



not modelled 13.4 33
PDB header:plant protein
Chain: A: PDB Molecule:rivi3;
PDBTitle: nmr solution structure of rivi3
67d1okha_



not modelled 13.4 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
68c1nb1A_



not modelled 13.3 33
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
69d1nb1a_



not modelled 13.3 33
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
70d1xx6a2



not modelled 13.2 17
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
71c2pncB_



not modelled 12.5 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase, liver isozyme;
PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine
72d1jmpa_



not modelled 12.1 10
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
73c1orxA_



not modelled 12.1 20
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
74c2lamA_



not modelled 11.9 33
PDB header:antiviral protein
Chain: A: PDB Molecule:cyclotide cter m;
PDBTitle: three-dimensional structure of the cyclotide cter m
75c3e4hA_



not modelled 11.8 22
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
76d1d6za1



not modelled 11.7 9
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
77d2bvya1



not modelled 11.5 31
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
78d2ho2a1



not modelled 11.3 25
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
79c2o01N_



not modelled 11.1 40
PDB header:photosynthesis
Chain: N: PDB Molecule:photosystem i-n subunit;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
80c2wsfN_



not modelled 11.1 40
PDB header:photosynthesis
Chain: N: PDB Molecule:photosystem i-n subunit;
PDBTitle: improved model of plant photosystem i
81c1kalA_



not modelled 10.9 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: elucidation of the primary and three-dimensional structure2 of the uterotonic polypeptide kalata b1
82d2oqea1



not modelled 10.7 9
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
83c2k7gA_



not modelled 10.4 22
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: solution structure of varv f
84d2cxha1



not modelled 10.4 23
Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Brix domain
85c2cxhA_



not modelled 10.4 23
PDB header:rna binding protein
Chain: A: PDB Molecule:probable brix-domain ribosomal biogenesis protein;
PDBTitle: crystal structure of probable ribosomal biogenesis protein from2 aeropyrum pernix k1
86c2jydA_



not modelled 10.3 50
PDB header:metal binding protein
Chain: A: PDB Molecule:f5 domain of myelin transcription factor 1;
PDBTitle: structure of the fifth zinc finger of myelin transcription2 factor 1
87c2c10D_



not modelled 10.1 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:membrane copper amine oxidase;
PDBTitle: the structure of a truncated, soluble version of semicarbazide-2 sensitive amine oxidase
88c1ui7A_



not modelled 10.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylethylamine oxidase;
PDBTitle: site-directed mutagenesis of his433 involved in binding of2 copper ion in arthrobacter globiformis amine oxidase
89c2lurA_



not modelled 10.0 38
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
90c3higB_



not modelled 9.9 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:amiloride-sensitive amine oxidase;
PDBTitle: crystal structure of human diamine oxidase in complex with the2 inhibitor berenil
91c2kukA_



not modelled 9.9 22
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
92c5sydA_



not modelled 9.8 60
PDB header:oxidoreductase
Chain: A: PDB Molecule:azurin, chimeric construct;
PDBTitle: circularly permutated azurin (cpaz) based on p. aeruginosa azurin2 sequence
93c1zw8A_



not modelled 9.8 27
PDB header:transcription
Chain: A: PDB Molecule:zinc-responsive transcriptional regulator zap1;
PDBTitle: solution structure of a zap1 zinc-responsive domain2 provides insights into metalloregulatory transcriptional3 repression in saccharomyces cerevisiae
94c2gj0A_



not modelled 9.8 33
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o14;
PDBTitle: cycloviolacin o14
95c2msoA_



not modelled 9.8 38
PDB header:toxin
Chain: A: PDB Molecule:conotoxin gm9.1;
PDBTitle: solution study of cgm9a
96c1d6uB_



not modelled 9.2 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of e. coli amine oxidase anaerobically reduced with2 beta-phenylethylamine
97c2m9oA_



not modelled 9.0 22
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: solution structure of kalata b7
98c2f2jA_



not modelled 9.0 20
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1
99c1ekmC_



not modelled 8.9 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure at 2.5 a resolution of zinc-substituted2 copper amine oxidase of hansenula polymorpha expressed in3 escherichia coli

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