Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1709_(-)_1937320_1938156
DateFri Aug 2 13:30:31 BST 2019
Unique Job IDddb3b7cd916afd57
SequenceVNGLQNSLAN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:84.174 Y:47.445 Z:47.052
Model (left) based on template c4i98A_
Top template information
PDB header:cell cycle
Chain: A: PDB Molecule:segregation and condensation protein a;
PDBTitle: crystal structure of the complex between scpa(residues 1-160)-2 scpb(residues 1-183)
Confidence and coverage
Confidence:100.0% Coverage: 53%
146 residues ( 53% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
224 residues ( 81%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4i98A_



100.0 25
PDB header:cell cycle
Chain: A: PDB Molecule:segregation and condensation protein a;
PDBTitle: crystal structure of the complex between scpa(residues 1-160)-2 scpb(residues 1-183)
2c3w6jA_



100.0 32
PDB header:cell cycle
Chain: A: PDB Molecule:scpa;
PDBTitle: crystal structure of scpab core complex
3c3zgxZ_



99.9 40
PDB header:cell cycle
Chain: Z: PDB Molecule:segregation and condensation protein a;
PDBTitle: crystal structure of the kleisin-n smc interface in2 prokaryotic condensin
4c5h67C_



99.5 25
PDB header:dna binding protein/cell cycle
Chain: C: PDB Molecule:segregation and condensation protein a;
PDBTitle: crystal structure of the bacillus subtilis smc head domain complexed2 with the cognate scpa c-terminal domain and soaked atp
5c1w1wF_



98.6 18
PDB header:cell adhesion
Chain: F: PDB Molecule:sister chromatid cohesion protein 1;
PDBTitle: sc smc1hd:scc1-c complex, atpgs
6d1w1we_



98.6 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rad21/Rec8-like
7c4i99C_



98.3 32
PDB header:dna binding protein
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the smchead bound to the c-winged helix domain of2 scpa
8c6qj4E_



86.6 23
PDB header:cell cycle
Chain: E: PDB Molecule:condensin complex subunit 2;
PDBTitle: crystal structure of the c. thermophilum condensin ycs4-brn12 subcomplex bound to the smc4 atpase head in complex with the c-3 terminal domain of brn1
9c2l01A_



84.1 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bvu3908 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr153
10c2l02B_



62.8 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375
11c3f41B_



57.5 7
PDB header:hydrolase
Chain: B: PDB Molecule:phytase;
PDBTitle: structure of the tandemly repeated protein tyrosine2 phosphatase like phytase from mitsuokella multacida
12d1whqa_



34.5 22
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
13c2qdoC_



20.9 21
PDB header:photosynthesis
Chain: C: PDB Molecule:nbla protein;
PDBTitle: nbla protein from t. vulcanus
14c1u24A_



19.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:myo-inositol hexaphosphate phosphohydrolase;
PDBTitle: crystal structure of selenomonas ruminantium phytase
15c2bbrA_



19.9 17
PDB header:viral protein
Chain: A: PDB Molecule:viral casp8 and fadd-like apoptosis regulator;
PDBTitle: crystal structure of mc159 reveals molecular mechanism of2 disc assembly and vflip inhibition
16d2gf5a2



18.8 20
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH effector domain, DED
17c2bbzC_



18.1 17
PDB header:viral protein
Chain: C: PDB Molecule:viral casp8 and fadd-like apoptosis regulator;
PDBTitle: crystal structure of mc159 reveals molecular mechanism of2 disc assembly and vflip inhibition
18c2ls7A_



16.8 10
PDB header:apoptosis
Chain: A: PDB Molecule:astrocytic phosphoprotein pea-15;
PDBTitle: high definition solution structure of ped/pea-15 death effector domain
19d1ocka_



14.3 17
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
20d2ixma1



13.8 18
Fold:PTPA-like
Superfamily:PTPA-like
Family:PTPA-like
21c3mhvC_



not modelled 13.7 3
PDB header:protein transport
Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 4;
PDBTitle: crystal structure of vps4 and vta1
22d1h99a2



not modelled 10.4 18
Fold:PTS-regulatory domain, PRD
Superfamily:PTS-regulatory domain, PRD
Family:PTS-regulatory domain, PRD
23d1b34b_



not modelled 10.1 27
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:Sm motif of small nuclear ribonucleoproteins, SNRNP
24c1b34B_



not modelled 10.1 27
PDB header:rna binding protein
Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2);
PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain
25c2g62A_



not modelled 9.9 18
PDB header:hydrolase activator
Chain: A: PDB Molecule:protein phosphatase 2a, regulatory subunit b' (pr 53);
PDBTitle: crystal structure of human ptpa
26c5h6tB_



not modelled 9.6 13
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase from microbacterium sp. strain hm58-2
27c4xypA_



not modelled 9.5 15
PDB header:viral protein
Chain: A: PDB Molecule:fusion protein;
PDBTitle: crystal structure of a piscine viral fusion protein
28c1ydnA_



not modelled 9.3 17
PDB header:lyase
Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase;
PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35.
29d2ozza1



not modelled 9.0 38
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
30d1wg8a1



not modelled 8.7 23
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
31d1n3ka_



not modelled 8.5 10
Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH effector domain, DED
32c3r6uA_



not modelled 8.2 10
PDB header:transport protein
Chain: A: PDB Molecule:choline-binding protein;
PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis
33d1m6ya1



not modelled 8.2 30
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
34c2l2iB_



not modelled 8.2 86
PDB header:transcription
Chain: B: PDB Molecule:krueppel-like factor 1;
PDBTitle: nmr structure of the complex between the tfb1 subunit of tfiih and the2 activation domain of eklf
35c3pcqX_



not modelled 7.9 44
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: femtosecond x-ray protein nanocrystallography
36c5j0fA_



not modelled 7.8 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:superoxide dismutase [cu-zn],oxidoreductase,superoxide
PDBTitle: monomeric human cu,zn superoxide dismutase, loops iv and vii deleted,2 apo form, circular permutant p4/5
37c5ganm_



not modelled 7.6 20
PDB header:transcription
Chain: M: PDB Molecule:
PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
38c1jb0X_



not modelled 7.2 44
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i subunit psax;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
39c4fe1X_



not modelled 7.2 44
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: improving the accuracy of macromolecular structure refinement at 7 a2 resolution
40d1jb0x_



not modelled 7.2 44
Fold:Single transmembrane helix
Superfamily:Subunit PsaX of photosystem I reaction centre
Family:Subunit PsaX of photosystem I reaction centre
41d2pt0a1



not modelled 7.2 15
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Myo-inositol hexaphosphate phosphohydrolase (phytase) PhyA
42c4z7eB_



not modelled 7.1 10
PDB header:transport protein
Chain: B: PDB Molecule:lmo1422 protein;
PDBTitle: soluble binding domain of lmo1422 abc-transporter
43c4tvvA_



not modelled 6.9 10
PDB header:hydrolase
Chain: A: PDB Molecule:tyrosine phosphatase ii superfamily protein;
PDBTitle: crystal structure of lppa from legionella pneumophila
44d2azeb1



not modelled 6.8 35
Fold:E2F-DP heterodimerization region
Superfamily:E2F-DP heterodimerization region
Family:E2F dimerization segment
45d1v2za_



not modelled 6.8 15
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
46c1xhoB_



not modelled 6.7 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: chorismate mutase from clostridium thermocellum cth-682
47d1xhoa_



not modelled 6.7 18
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
48c2gppD_



not modelled 6.5 36
PDB header:transcription
Chain: D: PDB Molecule:nuclear receptor-interacting protein 1;
PDBTitle: estrogen related receptor-gamma ligand binding domain2 complexed with a rip140 peptide and synthetic ligand3 gsk4716
49c4ljoA_



not modelled 6.5 39
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf31;
PDBTitle: structure of an active ligase (hoip)/ubiquitin transfer complex
50c3l6gA_



not modelled 6.3 27
PDB header:glycine betaine-binding protein
Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding
PDBTitle: crystal structure of lactococcal opuac in its open conformation
51c5jqeA_



not modelled 6.3 10
PDB header:hydrolase
Chain: A: PDB Molecule:sugar abc transporter substrate-binding protein,caspase-8
PDBTitle: crystal structure of caspase8 tded
52d1fnja_



not modelled 6.3 24
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
53c5ir0B_



not modelled 6.3 33
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein orf19;
PDBTitle: crystal structure of protein of unknown function orf19 from vibrio2 cholerae o1 pici-like element, c57s i109m mutant
54c2do5A_



not modelled 6.2 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:splicing factor 3b subunit 2;
PDBTitle: solution structure of the sap domain of human splicing2 factor 3b subunit 2
55d1sv1a_



not modelled 6.0 15
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Circadian clock protein KaiA, C-terminal domain
56c5gveA_



not modelled 5.7 16
PDB header:isomerase/protein binding
Chain: A: PDB Molecule:dna topoisomerase 3-beta-1;
PDBTitle: human top3b-tdrd3 complex
57d2iboa1



not modelled 5.7 33
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
58c2v6xA_



not modelled 5.7 14
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 4;
PDBTitle: stractural insight into the interaction between escrt-iii and vps4
59c5jwrE_



not modelled 5.7 15
PDB header:transcription regulator
Chain: E: PDB Molecule:circadian clock protein kaia;
PDBTitle: crystal structure of foldswitch-stabilized kaib in complex with the n-2 terminal ci domain of kaic and a dimer of kaia c-terminal domains3 from thermosynechococcus elongatus
60c5j2yA_



not modelled 5.6 26
PDB header:gene regulation/dna
Chain: A: PDB Molecule:regulatory protein;
PDBTitle: molecular insight into the regulatory mechanism of the quorum-sensing2 repressor rsal in pseudomonas aeruginosa
61d1yqha1



not modelled 5.6 33
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
62c3d7aB_



not modelled 5.5 19
PDB header:unknown function
Chain: B: PDB Molecule:upf0201 protein ph1010;
PDBTitle: crystal structure of duf54 family protein ph1010 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
63d1lxna_



not modelled 5.4 27
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
64d1dbfa_



not modelled 5.4 24
Fold:Bacillus chorismate mutase-like
Superfamily:YjgF-like
Family:Chorismate mutase
65d1pdza1



not modelled 5.2 27
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:Enolase
66c3bw1A_



not modelled 5.2 33
PDB header:rna binding protein
Chain: A: PDB Molecule:u6 snrna-associated sm-like protein lsm3;
PDBTitle: crystal structure of homomeric yeast lsm3 exhibiting novel octameric2 ring organisation
67d1g8fa3



not modelled 5.1 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ATP sulfurylase C-terminal domain

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