Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1720c_(-)_1947037_1947426
DateFri Aug 2 13:30:32 BST 2019
Unique Job ID101fa08956153f70
SequenceVIVLDASAAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.633 Y:47.702 Z:47.885
Model (left) based on template d1v8pa_
Top template information
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
Confidence and coverage
Confidence: 99.9% Coverage: 93%
120 residues ( 93% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1v8pa_



99.9 18
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
2c1v8pK_



99.9 18
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
3d2fe1a1



99.8 27
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c2fe1A_



99.8 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
5c4xgrG_



99.7 13
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
6c3zvkC_



99.6 13
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
7c3tndC_



99.5 13
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
8c6nklA_



99.5 14
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
9c5l6mC_



99.5 16
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
10c5wzfB_



99.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
11d2h1ca1



99.4 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
12c3h87B_



99.4 19
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
13c5x3tD_



99.4 14
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
14c4chgC_



99.4 16
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
15c6a7vG_



99.3 23
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
16c5sv2A_



99.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
17c3dboB_



99.2 15
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
18d1v96a1



99.1 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19d1y82a1



99.0 17
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c3i8oA_



98.5 11
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from methanocaldococcus2 jannaschii dsm 2661.
21c3ix7A_



not modelled 98.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
22c5ywwA_



not modelled 98.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
23d1w8ia_



not modelled 98.1 14
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
24c5f4hF_



not modelled 98.1 16
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
25c2lcqA_



not modelled 97.6 13
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
26d1o4wa_



not modelled 97.4 16
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
27c2hwwC_



not modelled 96.5 14
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c6g5iy_



not modelled 87.9 22
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
29c5jpqd_



not modelled 79.6 11
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c2mdtA_



not modelled 75.1 13
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
31c2hwyB_



not modelled 73.8 24
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c5yz4A_



not modelled 71.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
33c3v33A_



not modelled 58.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
34c3v32B_



not modelled 48.6 25
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
35d2gpra_



not modelled 9.2 17
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
36c3iz5t_



not modelled 8.9 19
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
37d1glaf_



not modelled 8.2 21
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
38c1jqsB_



not modelled 7.9 6
PDB header:ribosome
Chain: B: PDB Molecule:elongation factor g;
PDBTitle: fitting of l11 protein and elongation factor g (domain g'2 and v) in the cryo-em map of e. coli 70s ribosome bound3 with ef-g and gmppcp, a nonhydrolysable gtp analog
39c4mj7B_



not modelled 7.5 13
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
40c4behA_



not modelled 6.8 29
PDB header:translation
Chain: A: PDB Molecule:60s acidic ribosomal protein p1;
PDBTitle: solution structure of human ribosomal protein p1.p2 heterodimer
41d2f3ga_



not modelled 6.4 21
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
42d1cmwa2



not modelled 6.2 30
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
43c3izct_



not modelled 6.1 19
PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein rpl19 (l19e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
44c2lbfA_



not modelled 5.9 29
PDB header:ribosomal protein
Chain: A: PDB Molecule:60s acidic ribosomal protein p1;
PDBTitle: solution structure of the dimerization domain of human ribosomal2 protein p1/p2 heterodimer
45d1gxja_



not modelled 5.9 27
Fold:Smc hinge domain
Superfamily:Smc hinge domain
Family:Smc hinge domain
46d1gpra_



not modelled 5.9 17
Fold:Barrel-sandwich hybrid
Superfamily:Duplicated hybrid motif
Family:Glucose permease-like
47c2wd5A_



not modelled 5.4 27
PDB header:cell cycle
Chain: A: PDB Molecule:structural maintenance of chromosomes protein 1a;
PDBTitle: smc hinge heterodimer (mouse)
48c3l51B_



not modelled 5.4 17
PDB header:cell cycle
Chain: B: PDB Molecule:structural maintenance of chromosomes protein 4;
PDBTitle: crystal structure of the mouse condensin hinge domain
49d1gxla_



not modelled 5.2 27
Fold:Smc hinge domain
Superfamily:Smc hinge domain
Family:Smc hinge domain

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