Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1721c_(-)_1947423_1947650
DateFri Aug 2 13:30:32 BST 2019
Unique Job ID1ece74e689376356
SequenceMSAMVQIRNV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.453 Y:26.815 Z:43.836
Model (left) based on template d2bsqe1
Top template information
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
Confidence and coverage
Confidence: 97.9% Coverage: 83%
62 residues ( 83% of your sequence) have been modelled with 97.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2bsqe1



97.9 26
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
2c2h1oH_



97.8 26
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
3c3h87D_



97.7 38
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
4c2an7A_



92.1 34
PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard
5c6gtsC_



90.1 26
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
6d1y9ba1



87.0 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:VCA0319-like
7c6ajnF_



86.8 21
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
8c6qeqD_



76.3 15
PDB header:dna binding protein
Chain: D: PDB Molecule:pcff;
PDBTitle: pcff from enterococcus faecalis pcf10
9c2k29A_



60.9 27
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
10c4q2uM_



58.5 25
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
11c4hv0B_



46.3 27
PDB header:transcription, viral protein
Chain: B: PDB Molecule:avtr;
PDBTitle: structure and function of avtr, a novel transcriptional regulator from2 a hyperthermophilic archaeal lipothrixvirus
12c2k5jB_



45.9 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
13c4fxeB_



45.1 26
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
14d1p94a_



42.5 23
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
15c2m2jA_



34.8 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative periplasmic protein;
PDBTitle: solution nmr structure of the n-terminal domain of stm1478 from2 salmonella typhimurium lt2: target str147a of the northeast3 structural genomics consortium (nesg), and apc101565 of the midwest4 center for structural genomics (mcsg).
16c4yy2A_



34.3 27
PDB header:de novo protein
Chain: A: PDB Molecule:dtor_3x33l;
PDBTitle: computationally designed left-handed alpha/alpha toroid with 3 repeats2 in space group p212121
17d1mnta_



33.6 31
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
18c2zmeB_



25.2 23
PDB header:protein transport
Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36;
PDBTitle: integrated structural and functional model of the human escrt-ii2 complex
19c1u9pA_



21.7 19
PDB header:unknown function
Chain: A: PDB Molecule:parc;
PDBTitle: permuted single-chain arc
20d1zj8a1



20.3 33
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
21d1myla_



not modelled 17.4 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
22d2bj7a1



not modelled 15.8 13
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
23c2ca9B_



not modelled 15.2 27
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
24c3fmtF_



not modelled 15.0 26
PDB header:replication inhibitor/dna
Chain: F: PDB Molecule:protein seqa;
PDBTitle: crystal structure of seqa bound to dna
25d1b28a_



not modelled 14.5 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
26c4b1yM_



not modelled 14.5 9
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel-3 bound to g-actin
27c6f0hD_



not modelled 14.1 21
PDB header:chaperone
Chain: D: PDB Molecule:ip4;
PDBTitle: crystal structure asf1-ip4
28c6f0hB_



not modelled 13.8 21
PDB header:chaperone
Chain: B: PDB Molecule:ip4;
PDBTitle: crystal structure asf1-ip4
29c3uoeB_



not modelled 13.6 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti
30c3i0pA_



not modelled 13.5 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of malate dehydrogenase from entamoeba histolytica
31c1vbiA_



not modelled 12.7 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase;
PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8
32c6a6xC_



not modelled 12.6 26
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
33d1rfma_



not modelled 11.9 16
Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
34c1v9nA_



not modelled 11.8 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3
35d1xrxa1



not modelled 11.5 30
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
36c1xrxD_



not modelled 11.5 30
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
37c3zzwA_



not modelled 11.1 29
PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase transmembrane receptor ror2;
PDBTitle: crystal structure of the kinase domain of ror2
38c3fdgA_



not modelled 10.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase ac. metallo peptidase. merops family m19;
PDBTitle: the crystal structure of the dipeptidase ac, metallo peptidase. merops2 family m19
39c2bj3D_



not modelled 10.2 13
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
40c1q5vB_



not modelled 10.2 18
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
41c2yjfM_



not modelled 9.8 17
PDB header:motor protein
Chain: M: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: oligomeric assembly of actin bound to mrtf-a
42c4f1oA_



not modelled 9.7 10
PDB header:transferase, signaling protein
Chain: A: PDB Molecule:serine/threonine-protein kinase roco4;
PDBTitle: crystal structure of the l1180t mutant roco4 kinase domain from d.2 discoideum bound to appcp
43c3rk6A_



not modelled 9.1 21
PDB header:translation regulator
Chain: A: PDB Molecule:polyadenylate-binding protein-interacting protein 1;
PDBTitle: crystal structure of the middle domain of human paip1
44c1z2iA_



not modelled 9.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of agrobacterium tumefaciens malate2 dehydrogenase, new york structural genomics consortium
45d2jnaa1



not modelled 8.7 25
Fold:Dodecin subunit-like
Superfamily:YdgH-like
Family:YdgH-like
46d1aopa2



not modelled 8.6 17
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
47c5abxB_



not modelled 8.3 18
PDB header:translation
Chain: B: PDB Molecule:4e-binding protein mextli;
PDBTitle: complex of c. elegans eif4e-3 with the 4e-binding protein2 mextli and cap analog
48c6em3J_



not modelled 8.2 31
PDB header:ribosome
Chain: J: PDB Molecule:rrna-processing protein ebp2;
PDBTitle: state a architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
49c3zbeA_



not modelled 7.9 31
PDB header:toxin-antitoxin
Chain: A: PDB Molecule:paaa2;
PDBTitle: e. coli o157 pare2-associated antitoxin 2 (paaa2)
50c2k9iB_



not modelled 7.9 24
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
51c4rqoB_



not modelled 7.7 11
PDB header:lyase
Chain: B: PDB Molecule:l-serine dehydratase;
PDBTitle: crystal structure of l-serine dehydratase from legionella pneumophila
52c5uv4A_



not modelled 7.7 27
PDB header:transferase
Chain: A: PDB Molecule:putative leucine-rich repeat protein kinase family protein;
PDBTitle: crystal structure of maize sirk1 (sucrose-induced receptor kinase 1)2 kinase domain bound to amp-pnp
53d2bcqa3



not modelled 7.4 27
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
54c5waiC_



not modelled 7.2 20
PDB header:transcription
Chain: C: PDB Molecule:zinc finger protein aebp2;
PDBTitle: crystal structure of a suz12-rbbp4-jarid2-aebp2 heterotetrameric2 complex
55d1jqra_



not modelled 7.0 18
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
56d1mylb_



not modelled 6.9 24
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
57c4p4oA_



not modelled 6.5 9
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: crystal structure of leishmania infantum polymerase beta: ternary gap2 complex
58d4croa_



not modelled 6.4 44
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
59c1odpA_



not modelled 6.3 50
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.6, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
60c1odrA_



not modelled 6.3 50
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:dpc mole ratio3 of 1:40
61c1odqA_



not modelled 6.3 50
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 3.7, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
62c2oidA_



not modelled 6.2 19
PDB header:transferase
Chain: A: PDB Molecule:interleukin-1 receptor-associated kinase 4;
PDBTitle: crystal structure of irak4 kinase domain complexed with2 amppnp
63d2hzab1



not modelled 6.2 19
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
64c2kl8A_



not modelled 6.1 30
PDB header:de novo protein
Chain: A: PDB Molecule:or15;
PDBTitle: solution nmr structure of de novo designed ferredoxin-like fold2 protein, northeast structural genomics consortium target or15
65d2fmpa3



not modelled 5.9 14
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
66d1rh5b_



not modelled 5.7 23
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
67d1d1la_



not modelled 5.6 44
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
68c4b1zM_



not modelled 5.5 9
PDB header:structural protein
Chain: M: PDB Molecule:phosphatase and actin regulator 1;
PDBTitle: structure of the phactr1 rpel domain bound to g-actin
69d1srqa_



not modelled 5.5 17
Fold:Rap/Ran-GAP
Superfamily:Rap/Ran-GAP
Family:Rap/Ran-GAP
70c5fd2B_



not modelled 5.5 20
PDB header:transferase/transferase inhibitor
Chain: B: PDB Molecule:serine/threonine-protein kinase b-raf;
PDBTitle: b-raf wild-type kinase domain in complex with a purinylpyridinylamino-2 based inhibitor
71d1u9da_



not modelled 5.5 26
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:VC0714-like
72c3v5qB_



not modelled 5.4 15
PDB header:transferase/transferase inhibitor
Chain: B: PDB Molecule:nt-3 growth factor receptor;
PDBTitle: discovery of a selective trk inhibitor with efficacy in rodent cancer2 tumor models
73c2bcuA_



not modelled 5.3 27
PDB header:transferase, lyase/dna
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
74d2noca1



not modelled 5.3 12
Fold:Dodecin subunit-like
Superfamily:YdgH-like
Family:YdgH-like
75c5xd6A_



not modelled 5.3 20
PDB header:transferase
Chain: A: PDB Molecule:protein kinase superfamily protein;
PDBTitle: cark1 phosphorylates aba receptors
76c2pijB_



not modelled 5.2 33
PDB header:transcription
Chain: B: PDB Molecule:prophage pfl 6 cro;
PDBTitle: structure of the cro protein from prophage pfl 6 in pseudomonas2 fluorescens pf-5
77c2g8yB_



not modelled 5.2 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:malate/l-lactate dehydrogenases;
PDBTitle: the structure of a putative malate/lactate dehydrogenase from e. coli.

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