Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1724c_(-)_1950639_1951058
DateFri Aug 2 13:30:32 BST 2019
Unique Job ID18f7dddf6def9d01
SequenceMVGNEENELQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.883 Y:42.643 Z:24.421
Model (left) based on template c3j61G_
Top template information
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8e;
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
Confidence and coverage
Confidence: 78.3% Coverage: 22%
30 residues ( 22% of your sequence) have been modelled with 78.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3j61G_
78.3 33
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8e;
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
2c3j39G_
72.3 40
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
3c3u5iG_
68.1 33
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome b
4c3zf7x_
62.1 33
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l23a;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
5c4a1eF_
57.2 33
PDB header:ribosome
Chain: F: PDB Molecule:rpl7a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
6c3j3bG_
50.7 33
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the human 60s ribosomal proteins
7d2je8a2
37.2 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
8d2dy1a3
26.0 13
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
9d1j98a_
24.9 17
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
10c2kglA_
20.3 31
PDB header:chaperone
Chain: A: PDB Molecule:mesoderm development candidate 2;
PDBTitle: nmr solution structure of mesd
11d1sknp_
16.5 30
Fold:A DNA-binding domain in eukaryotic transcription factors
Superfamily:A DNA-binding domain in eukaryotic transcription factors
Family:A DNA-binding domain in eukaryotic transcription factors
12d1jw2a_
15.2 38
Fold:Open three-helical up-and-down bundle
Superfamily:Hemolysin expression modulating protein HHA
Family:Hemolysin expression modulating protein HHA
13d1vcpa_
15.1 27
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
14d2gy9s1
13.7 46
Fold:Ribosomal protein S19
Superfamily:Ribosomal protein S19
Family:Ribosomal protein S19
15d1vjea_
12.3 21
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
16c1bb1A_
11.4 42
PDB header:de novo protein design
Chain: A: PDB Molecule:designed, thermostable heterotrimeric coiled
PDBTitle: crystal structure of a designed, thermostable2 heterotrimeric coiled coil
17c2lxrA_
11.3 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh dehydrogenase i subunit e;
PDBTitle: solution structure of hp1264 from helicobacter pylori
18c4u5tB_
10.8 47
PDB header:transcription/transcription inhibitor
Chain: B: PDB Molecule:vbp leucine zipper;
PDBTitle: crystal structure of vbp leucine zipper with bound arylstibonic acid
19d2gnxa2
10.7 67
Fold:Gelsolin-like
Superfamily:FLJ32549 C-terminal domain-like
Family:FLJ32549 C-terminal domain-like
20c4a1bB_
10.7 67
PDB header:ribosome
Chain: B: PDB Molecule:rpl39;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3.
21c3okqA_
not modelled 10.1 44
PDB header:protein binding
Chain: A: PDB Molecule:bud site selection protein 6;
PDBTitle: crystal structure of a core domain of yeast actin nucleation cofactor2 bud6
22c2l42A_
not modelled 10.0 18
PDB header:protein binding
Chain: A: PDB Molecule:dna-binding protein rap1;
PDBTitle: the solution structure of rap1 brct domain from saccharomyces2 cerevisiae
23d1oeda_
not modelled 9.8 15
Fold:Neurotransmitter-gated ion-channel transmembrane pore
Superfamily:Neurotransmitter-gated ion-channel transmembrane pore
Family:Neurotransmitter-gated ion-channel transmembrane pore
24c3zf7q_
not modelled 9.8 83
PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l15;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
25c5xxuP_
not modelled 9.7 62
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein us19;
PDBTitle: small subunit of toxoplasma gondii ribosome
26c2mrlA_
not modelled 9.5 53
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein bth i2711;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments and nmr structure2 for potential drug target from burkholderia thailandensis e264
27c5e68A_
not modelled 9.4 22
PDB header:lyase
Chain: A: PDB Molecule:s-ribosylhomocysteine lyase;
PDBTitle: high resolution crystal structure of luxs - quorum sensor molecular2 complex from salmonella typhi at 1.58 angstroms
28d1jeqa1
not modelled 9.4 67
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
29d2uubs1
not modelled 9.2 62
Fold:Ribosomal protein S19
Superfamily:Ribosomal protein S19
Family:Ribosomal protein S19
30d3eipa_
not modelled 9.1 31
Fold:FKBP-like
Superfamily:Colicin E3 immunity protein
Family:Colicin E3 immunity protein
31c5xyiP_
not modelled 9.1 38
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein s19, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
32c2xzmS_
not modelled 9.1 46
PDB header:ribosome
Chain: S: PDB Molecule:rps15e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
33c2zkr3_
not modelled 9.1 44
PDB header:ribosomal protein/rna
Chain: 3: PDB Molecule:60s ribosomal protein l39e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
34c3izso_
not modelled 8.8 67
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein rpl28 (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
35c2vxaL_
not modelled 8.6 33
PDB header:flavoprotein
Chain: L: PDB Molecule:dodecin;
PDBTitle: h.halophila dodecin in complex with riboflavin
36c3bbnS_
not modelled 8.5 31
PDB header:ribosome
Chain: S: PDB Molecule:ribosomal protein s19;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
37c5o5jS_
not modelled 8.3 23
PDB header:ribosome
Chain: S: PDB Molecule:30s ribosomal protein s19;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
38c4xchB_
not modelled 8.3 19
PDB header:lyase
Chain: B: PDB Molecule:s-ribosylhomocysteine lyase;
PDBTitle: s-ribosylhomocysteinase from streptococcus suis
39c3j20T_
not modelled 8.2 38
PDB header:ribosome
Chain: T: PDB Molecule:30s ribosomal protein s19p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
40d2i0ka1
not modelled 8.2 19
Fold:Ferredoxin-like
Superfamily:FAD-linked oxidases, C-terminal domain
Family:Cholesterol oxidase
41d2ux9a1
not modelled 8.1 22
Fold:Dodecin subunit-like
Superfamily:Dodecin-like
Family:Dodecin-like
42c6r1eC_
not modelled 8.0 39
PDB header:flavoprotein
Chain: C: PDB Molecule:dodecin;
PDBTitle: structure of dodecin from streptomyces coelicolor
43c3c9dB_
not modelled 8.0 32
PDB header:chaperone
Chain: B: PDB Molecule:vacuolar protein sorting-associated protein 75;
PDBTitle: crystal structure of vps75
44c6ehtE_
not modelled 7.9 56
PDB header:dna binding protein
Chain: E: PDB Molecule:pcna-associated factor;
PDBTitle: modulation of pcna sliding surface by p15paf suggests a suppressive2 mechanism for cisplatin-induced dna lesion bypass by pol eta3 holoenzyme
45c2zkqs_
not modelled 7.7 46
PDB header:ribosomal protein/rna
Chain: S: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
46c3zeyI_
not modelled 7.6 46
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s15, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
47c2rqmA_
not modelled 7.5 54
PDB header:chaperone
Chain: A: PDB Molecule:mesoderm development candidate 2;
PDBTitle: nmr solution structure of mesoderm development (mesd) - open2 conformation
48c1s1hS_
not modelled 7.5 38
PDB header:ribosome
Chain: S: PDB Molecule:40s ribosomal protein s15;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
49c5lutK_
not modelled 7.5 67
PDB header:transferase
Chain: K: PDB Molecule:blm helicase;
PDBTitle: structures of dhbn domain of gallus gallus blm helicase
50c3bxwB_
not modelled 7.3 28
PDB header:hydrolase
Chain: B: PDB Molecule:chitinase domain-containing protein 1;
PDBTitle: crystal structure of stabilin-1 interacting chitinase-like protein,2 si-clp
51d1wi1a_
not modelled 7.3 32
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Pleckstrin-homology domain (PH domain)
52c6gwsE_
not modelled 7.3 56
PDB header:replication
Chain: E: PDB Molecule:pcna-associated factor;
PDBTitle: crystal structure of human pcna in complex with three p15 peptides
53c6ehtD_
not modelled 7.3 56
PDB header:dna binding protein
Chain: D: PDB Molecule:pcna-associated factor;
PDBTitle: modulation of pcna sliding surface by p15paf suggests a suppressive2 mechanism for cisplatin-induced dna lesion bypass by pol eta3 holoenzyme
54c6gwsD_
not modelled 7.2 56
PDB header:replication
Chain: D: PDB Molecule:pcna-associated factor;
PDBTitle: crystal structure of human pcna in complex with three p15 peptides
55c1sb3D_
not modelled 7.2 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
56c4d2gE_
not modelled 7.2 56
PDB header:transcription
Chain: E: PDB Molecule:p15;
PDBTitle: crystal structure of human pcna in complex with p15 peptide
57c4d2gD_
not modelled 7.2 56
PDB header:transcription
Chain: D: PDB Molecule:p15;
PDBTitle: crystal structure of human pcna in complex with p15 peptide
58c2auhB_
not modelled 7.2 33
PDB header:transferase/signaling protein
Chain: B: PDB Molecule:growth factor receptor-bound protein 14;
PDBTitle: crystal structure of the grb14 bps region in complex with2 the insulin receptor tyrosine kinase
59c2wj8N_
not modelled 7.2 41
PDB header:rna binding protein/rna
Chain: N: PDB Molecule:nucleoprotein;
PDBTitle: respiratory syncitial virus ribonucleoprotein
60c3izbR_
not modelled 7.0 38
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein rps15 (s19p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
61c3oqtP_
not modelled 6.7 17
PDB header:flavoprotein
Chain: P: PDB Molecule:rv1498a protein;
PDBTitle: crystal structure of rv1498a protein from mycobacterium tuberculosis
62c3onrI_
not modelled 6.7 21
PDB header:metal binding protein
Chain: I: PDB Molecule:protein transport protein sece2;
PDBTitle: crystal structure of the calcium chelating immunodominant antigen,2 calcium dodecin (rv0379),from mycobacterium tuberculosis with a novel3 calcium-binding site
63d1t3qb2
not modelled 6.6 22
Fold:Molybdenum cofactor-binding domain
Superfamily:Molybdenum cofactor-binding domain
Family:Molybdenum cofactor-binding domain
64c3j38P_
not modelled 6.6 54
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s15, isoform a;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
65c4gh9A_
not modelled 6.5 50
PDB header:viral protein,rna binding protein
Chain: A: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of marburg virus vp35 rna binding domain
66c4uebF_
not modelled 6.4 60
PDB header:translation
Chain: F: PDB Molecule:designed 4e-bp;
PDBTitle: complex of d. melanogaster eif4e with a designed 4e-binding protein2 (form ii)
67c1ueoA_
not modelled 6.1 86
PDB header:antibiotic
Chain: A: PDB Molecule:penaeidin-3a;
PDBTitle: solution structure of the [t8a]-penaeidin-3
68c3gyvA_
not modelled 6.1 31
PDB header:chaperone
Chain: A: PDB Molecule:nucleosome assembly protein 1, putative;
PDBTitle: crystal structure of nucleosome assembly protein from plasmodium2 falciparum
69d1g2qa_
not modelled 5.9 26
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
70c1jjrA_
not modelled 5.8 67
PDB header:dna binding protein
Chain: A: PDB Molecule:thyroid autoantigen;
PDBTitle: the three-dimensional structure of the c-terminal dna2 binding domain of human ku70
71c2ww9O_
not modelled 5.8 44
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l39;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the yeast2 80s ribosome
72d1euvb_
not modelled 5.8 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
73c3j21f_
not modelled 5.7 67
PDB header:ribosome
Chain: F: PDB Molecule:50s ribosomal protein l6p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
74d2gr8a1
not modelled 5.7 17
Fold:Pili subunits
Superfamily:Pili subunits
Family:YadA C-terminal domain-like
75d2d8xa1
not modelled 5.6 54
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
76c3ks8D_
not modelled 5.3 70
PDB header:viral protein/rna
Chain: D: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of reston ebolavirus vp35 rna binding domain in2 complex with 18bp dsrna
77c4axgC_
not modelled 5.3 60
PDB header:translation
Chain: C: PDB Molecule:protein cup;
PDBTitle: structure of eif4e-cup complex
78c2yewG_
not modelled 5.2 19
PDB header:virus
Chain: G: PDB Molecule:capsid protein;
PDBTitle: modeling barmah forest virus structural proteins

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