Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1728c_(-)_1953871_1954641
DateFri Aug 2 13:30:33 BST 2019
Unique Job IDfb6bb3be37d7afcd
SequenceMSVNGLPGAH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.205 Y:34.419 Z:31.850
Model (left) based on template d1lbua2
Top template information
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:Muramoyl-pentapeptide carboxypeptidase
Confidence and coverage
Confidence: 95.9% Coverage: 29%
75 residues ( 29% of your sequence) have been modelled with 95.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1lbua2
95.9 29
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:Muramoyl-pentapeptide carboxypeptidase
2c4ox3A_
95.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative carboxypeptidase yodj;
PDBTitle: structure of the ldcb ld-carboxypeptidase reveals the molecular basis2 of peptidoglycan recognition
3c5hnmC_
94.7 27
PDB header:hydrolase
Chain: C: PDB Molecule:d-alanyl-d-alanine carboxypeptidase;
PDBTitle: crystal structure of vancomycin resistance d,d-pentapeptidase vany2 e175a mutant from vanb-type resistance cassette in complex with3 zn(ii)
4c4murA_
94.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:d,d-dipeptidase/d,d-carboxypeptidase;
PDBTitle: crystal structure of vancomycin resistance d,d-dipeptidase/d,d-2 pentapeptidase vanxyc d59s mutant
5c4ox5A_
94.2 27
PDB header:hydrolase
Chain: A: PDB Molecule:ldcb ld-carboxypeptidase;
PDBTitle: structure of the ldcb ld-carboxypeptidase reveals the molecular basis2 of peptidoglycan recognition
6c1lbuA_
94.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:muramoyl-pentapeptide carboxypeptidase;
PDBTitle: hydrolase metallo (zn) dd-peptidase
7d2vo9a1
93.2 23
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:VanY-like
8c2vo9C_
91.2 22
PDB header:hydrolase
Chain: C: PDB Molecule:l-alanyl-d-glutamate peptidase;
PDBTitle: crystal structure of the enzymatically active domain of the listeria2 monocytogenes bacteriophage 500 endolysin ply500
9c4jidA_
88.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:d-alanyl-d-alanine carboxypeptidase family protein;
PDBTitle: crystal structure of baldcb / vany-like l,d-carboxypeptidase zinc(ii)-2 free
10c4f78A_
87.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:d,d-dipeptidase/d,d-carboxypeptidase;
PDBTitle: crystal structure of vancomycin resistance d,d-dipeptidase vanxyg
11d1tzpa_
87.3 17
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:MepA-like
12c5opzB_
86.4 24
PDB header:hydrolase
Chain: B: PDB Molecule:chix;
PDBTitle: crystal structure of serratia marcescens l-ala d-glu endopeptidase2 chix
13c2mxzA_
82.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:l-alanyl-d-glutamate peptidase;
PDBTitle: bacteriophage t5 l-alanoyl-d-glutamate peptidase comlpex with zn2+2 (endo t5-zn2+)
14d3d1ma1
78.3 22
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:Hedgehog (development protein), N-terminal signaling domain
15c3m1nB_
61.5 22
PDB header:signaling protein
Chain: B: PDB Molecule:sonic hedgehog protein;
PDBTitle: crystal structure of human sonic hedgehog n-terminal domain
16d2ibge1
46.6 19
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:Hedgehog (development protein), N-terminal signaling domain
17d1pbaa_
38.6 7
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
18c3rcnA_
29.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: crystal structure of beta-n-acetylhexosaminidase from arthrobacter2 aurescens
19c5h4uB_
26.6 45
PDB header:hydrolase
Chain: B: PDB Molecule:endo-beta-1,4-glucanase;
PDBTitle: crystal structure of cellulase from antarctic springtail, cryptopygus2 antarcticus
20d1kwma2
24.4 10
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
21d1nsaa2
not modelled 22.8 7
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
22c2zhhA_
not modelled 19.2 23
PDB header:transcription
Chain: A: PDB Molecule:redox-sensitive transcriptional activator soxr;
PDBTitle: crystal structure of soxr
23c6q63B_
not modelled 15.7 15
PDB header:hydrolase
Chain: B: PDB Molecule:beta-hexosaminidase;
PDBTitle: bt0459
24d1o6xa_
not modelled 15.6 20
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
25d1ayea2
not modelled 15.2 20
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
26c4i8oA_
not modelled 13.5 12
PDB header:toxin
Chain: A: PDB Molecule:toxin rnla;
PDBTitle: crystal structure of the toxin rnla from escherichia coli
27d1pyta_
not modelled 13.5 23
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
28d1yloa2
not modelled 13.4 19
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Bacterial dinuclear zinc exopeptidases
29c2fvgA_
not modelled 13.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:endoglucanase;
PDBTitle: crystal structure of endoglucanase (tm1049) from thermotoga maritima2 at 2.01 a resolution
30c2k5kA_
not modelled 12.8 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein rhr2;
PDBTitle: solution structure of rhr2 from rhodobacter sphaeroides.2 northeast structural genomics consortium
31d2fhfa2
not modelled 12.6 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
32d1pcaa1
not modelled 12.2 27
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
33d1jqga2
not modelled 11.7 20
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
34c5j4aA_
not modelled 11.6 16
PDB header:toxin
Chain: A: PDB Molecule:trna nuclease cdia;
PDBTitle: cdia-ct toxin from burkholderia pseudomallei e479 in complex with2 cognate cdii immunity protein
35d1l8fa_
not modelled 10.5 40
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:Eng V-like
36d2boaa2
not modelled 9.3 16
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
37c3rpcD_
not modelled 9.1 40
PDB header:hydrolase
Chain: D: PDB Molecule:possible metal-dependent hydrolase;
PDBTitle: the crystal structure of a possible metal-dependent hydrolase from2 veillonella parvula dsm 2008
38c1qbaA_
not modelled 8.7 26
PDB header:glycosyl hydrolase
Chain: A: PDB Molecule:chitobiase;
PDBTitle: bacterial chitobiase, glycosyl hydrolase family 20
39c9rubB_
not modelled 8.5 26
PDB header:lyase(carbon-carbon)
Chain: B: PDB Molecule:ribulose-1,5-bisphosphate carboxylase;
PDBTitle: crystal structure of activated ribulose-1,5-bisphosphate carboxylase2 complexed with its substrate, ribulose-1,5-bisphosphate
40c6ezrA_
not modelled 8.5 21
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylglucosaminidase nag2;
PDBTitle: crystal structure of gh20 exo beta-n-acetylglucosaminidase from vibrio2 harveyi
41d1wiga2
not modelled 8.3 38
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
42d2cg7a1
not modelled 8.3 63
Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
43c5c5zA_
not modelled 8.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:glutamyl-trna amidotransferase;
PDBTitle: crystal structure analysis of c4763, a uropathogenic e. coli-specific2 protein
44c4jo0A_
not modelled 7.9 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:cmla;
PDBTitle: crystal structure of cmla, a diiron beta-hydroxylase from streptomyces2 venezuelae
45c4qn9A_
not modelled 7.7 50
PDB header:hydrolase
Chain: A: PDB Molecule:n-acyl-phosphatidylethanolamine-hydrolyzing phospholipase
PDBTitle: structure of human nape-pld
46c4hlmD_
not modelled 7.6 45
PDB header:transferase
Chain: D: PDB Molecule:tankyrase-2;
PDBTitle: crystal structure of tankyrase 2 in complex with 3',4'-2 dihydroxyflavone
47c6b4hB_
not modelled 7.6 40
PDB header:transport protein
Chain: B: PDB Molecule:nucleoporin amo1;
PDBTitle: crystal structure of chaetomium thermophilum gle1 ctd-nup42 gbm-ip62 complex
48c2rkzD_
not modelled 7.5 63
PDB header:cell adhesion
Chain: D: PDB Molecule:fibronectin;
PDBTitle: crystal structure of the second and third fibronectin f1 modules in2 complex with a fragment of staphylococcus aureus fnbpa-1
49d1r44a_
not modelled 7.4 24
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:VanX-like
50c3k44D_
not modelled 7.3 50
PDB header:nucleic acid binding protein
Chain: D: PDB Molecule:purine-rich binding protein-alpha, isoform b;
PDBTitle: crystal structure of drosophila melanogaster pur-alpha
51d1nowa1
not modelled 6.9 16
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
52c2fekA_
not modelled 6.6 33
PDB header:hydrolase
Chain: A: PDB Molecule:low molecular weight protein-tyrosine-
PDBTitle: structure of a protein tyrosine phosphatase
53c5fgoA_
not modelled 6.3 40
PDB header:dna binding protein
Chain: A: PDB Molecule:cg1507-pb, isoform b;
PDBTitle: crystal structure of d. melanogaster pur-alpha repeat iii.
54d1ug0a_
not modelled 6.2 6
Fold:Surp module (SWAP domain)
Superfamily:Surp module (SWAP domain)
Family:Surp module (SWAP domain)
55c3qb8A_
not modelled 6.1 12
PDB header:transferase
Chain: A: PDB Molecule:a654l protein;
PDBTitle: paramecium chlorella bursaria virus1 putative orf a654l is a polyamine2 acetyltransferase
56d2rkya2
not modelled 6.1 63
Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
57c2wylF_
not modelled 6.0 44
PDB header:hydrolase
Chain: F: PDB Molecule:l-ascorbate-6-phosphate lactonase ulag;
PDBTitle: apo structure of a metallo-b-lactamase
58c2imuA_
not modelled 5.8 44
PDB header:viral protein
Chain: A: PDB Molecule:structural polyprotein (pp) p1;
PDBTitle: nmr structure of pep46 from the infectious bursal disease2 virus (ibdv) in dodecylphosphocholin (dpc).
59d1y1la_
not modelled 5.8 63
Fold:Phosphotyrosine protein phosphatases I-like
Superfamily:Phosphotyrosine protein phosphatases I
Family:Low-molecular-weight phosphotyrosine protein phosphatases
60d2rkya1
not modelled 5.7 50
Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
61c2rkyA_
not modelled 5.7 63
PDB header:cell adhesion
Chain: A: PDB Molecule:fibronectin;
PDBTitle: crystal structure of the fourth and fifth fibronectin f1 modules in2 complex with a fragment of staphylococcus aureus fnbpa-1
62c2k89A_
not modelled 5.7 40
PDB header:protein binding
Chain: A: PDB Molecule:phospholipase a-2-activating protein;
PDBTitle: solution structure of a novel ubiquitin-binding domain from2 human plaa (pfuc, gly76-pro77 cis isomer)
63c5i8iD_
not modelled 5.5 27
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
64c4lrqC_
not modelled 5.5 56
PDB header:hydrolase
Chain: C: PDB Molecule:phosphotyrosine protein phosphatase;
PDBTitle: crystal structure of a low molecular weight phosphotyrosine2 phosphatase from vibrio choleraeo395
65c3w36A_
not modelled 5.4 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:naph1;
PDBTitle: crystal structure of holo-type bacterial vanadium-dependent2 chloroperoxidase
66c3pb6X_
not modelled 5.4 12
PDB header:transferase
Chain: X: PDB Molecule:glutaminyl-peptide cyclotransferase-like protein;
PDBTitle: crystal structure of the catalytic domain of human golgi-resident2 glutaminyl cyclase at ph 6.5
67c3bv6D_
not modelled 5.3 33
PDB header:hydrolase
Chain: D: PDB Molecule:metal-dependent hydrolase;
PDBTitle: crystal structure of uncharacterized metallo protein from vibrio2 cholerae with beta-lactamase like fold
68d1t1ua1
not modelled 5.1 26
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase

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