Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1733c_(-)_1959862_1960494
DateFri Aug 2 13:30:33 BST 2019
Unique Job ID512a88edd50837f5
SequenceMIATTRDREG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:17.403 Y:30.201 Z:12.863
Model (left) based on template c1hymB_
Top template information
PDB header:hydrolase (serine proteinase)
Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v;
PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr structure)
Confidence and coverage
Confidence: 61.6% Coverage: 9%
18 residues ( 9% of your sequence) have been modelled with 61.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1hymB_



61.6 44
PDB header:hydrolase (serine proteinase)
Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v;
PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr structure)
2d1dwma_



47.6 33
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
3c3rdyA_



45.5 50
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:bwi-1=protease inhibitor/trypsin inhibitor;
PDBTitle: crystal structure of buckwheat trypsin inhibitor rbti at 1.84 angstrom2 resolution
4c1vbwA_



45.0 41
PDB header:protein binding
Chain: A: PDB Molecule:trypsin inhibitor bgit;
PDBTitle: crystal structure of bitter gourd trypsin inhibitor
5d2snii_



43.8 35
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
6c2ci2I_



43.0 35
PDB header:proteinase inhibitor (chymotrypsin)
Chain: I: PDB Molecule:chymotrypsin inhibitor 2;
PDBTitle: crystal and molecular structure of the serine proteinase inhibitor ci-2 2 from barley seeds
7c2kncB_



41.3 22
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
8d1to2i_



41.3 35
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
9d1ypci_



40.7 35
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
10c1tinA_



38.8 44
PDB header:serine protease inhibitor
Chain: A: PDB Molecule:trypsin inhibitor v;
PDBTitle: three-dimensional structure in solution of cucurbita maxima trypsin2 inhibitor-v determined by nmr spectroscopy
11c1hjiB_



24.9 44
PDB header:bacteriophage hk022
Chain: B: PDB Molecule:nun-protein;
PDBTitle: bacteriophage hk022 nun-protein-nutboxb-rna complex
12c4tqvJ_



22.9 20
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
13d1csei_



20.9 18
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
14c3jt0B_



19.8 26
PDB header:structural protein
Chain: B: PDB Molecule:lamin-b1;
PDBTitle: crystal structure of the c-terminal fragment (426-558) lamin-b1 from2 homo sapiens, northeast structural genomics consortium target hr5546a
15d2byoa1



17.0 17
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:LppX-like
16c4qa8A_



16.8 17
PDB header:lipid transport
Chain: A: PDB Molecule:putative lipoprotein lprf;
PDBTitle: crystal structure of lprf from mycobacterium bovis
17d1em9a_



14.5 28
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
18d1egla_



13.9 18
Fold:CI-2 family of serine protease inhibitors
Superfamily:CI-2 family of serine protease inhibitors
Family:CI-2 family of serine protease inhibitors
19c1uv7A_



13.4 17
PDB header:transport
Chain: A: PDB Molecule:general secretion pathway protein m;
PDBTitle: periplasmic domain of epsm from vibrio cholerae
20d1uv7a_



13.4 17
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:General secretion pathway protein M, EpsM
Family:General secretion pathway protein M, EpsM
21d1p7na_



not modelled 13.1 28
Fold:Retrovirus capsid protein, N-terminal core domain
Superfamily:Retrovirus capsid protein, N-terminal core domain
Family:Retrovirus capsid protein, N-terminal core domain
22c2lllA_



not modelled 12.9 26
PDB header:structural protein
Chain: A: PDB Molecule:lamin-b2;
PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a
23d1oe1a2



not modelled 12.7 21
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
24c2e63A_



not modelled 12.0 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa1787 protein;
PDBTitle: solution structure of the neuz domain in kiaa1787 protein
25c2hbpA_



not modelled 11.9 33
PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1;
PDBTitle: solution structure of sla1 homology domain 1
26c3mhaB_



not modelled 11.2 21
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein lprg;
PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim
27c2bu8A_



not modelled 10.7 15
PDB header:transferase
Chain: A: PDB Molecule:pyruvate dehydrogenase kinase isoenzyme 2;
PDBTitle: crystal structures of human pyruvate dehydrogenase kinase 2 containing2 physiological and synthetic ligands
28c2yueA_



not modelled 10.4 19
PDB header:rna binding protein
Chain: A: PDB Molecule:protein neuralized;
PDBTitle: solution structure of the neuz (nhr) domain in neuralized2 from drosophila melanogaster
29d1qvpa_



not modelled 10.1 30
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
30c6d0gA_



not modelled 8.4 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:pirin family protein;
PDBTitle: 1.78 angstrom resolution crystal structure of quercetin 2,3-2 dioxygenase from acinetobacter baumannii
31c5lrvA_



not modelled 8.2 27
PDB header:hydrolase
Chain: A: PDB Molecule:otu domain-containing protein 7b;
PDBTitle: structure of cezanne/otud7b otu domain bound to lys11-linked2 diubiquitin
32d1ivta_



not modelled 8.0 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Lamin A/C globular tail domain
Family:Lamin A/C globular tail domain
33c4kf9A_



not modelled 7.9 21
PDB header:transferase
Chain: A: PDB Molecule:glutathione s-transferase protein;
PDBTitle: crystal structure of a glutathione transferase family member from2 ralstonia solanacearum, target efi-501780, with bound gsh coordinated3 to a zinc ion, ordered active site
34c1wq6A_



not modelled 7.8 20
PDB header:oncoprotein
Chain: A: PDB Molecule:aml1-eto;
PDBTitle: the tetramer structure of the nervy homolgy two (nhr2) domain of aml1-2 eto is critical for aml1-eto's activity
35c2jmbA_



not modelled 7.4 55
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu4866;
PDBTitle: solution structure of the protein atu4866 from agrobacterium2 tumefaciens
36c3ic8D_



not modelled 7.0 38
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized gst-like proteinprotein;
PDBTitle: the crystal structure of a gst-like protein from pseudomonas syringae2 to 2.4a
37c4ardA_



not modelled 7.0 20
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: structure of the immature retroviral capsid at 8a resolution by cryo-2 electron microscopy
38c5nv8A_



not modelled 7.0 50
PDB header:transferase
Chain: A: PDB Molecule:ef-p arginine 32 rhamnosyl-transferase;
PDBTitle: structural basis for earp-mediated arginine glycosylation of2 translation elongation factor ef-p
39d1gvia2



not modelled 6.9 21
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
40c3vgxD_



not modelled 6.9 25
PDB header:membrane protein
Chain: D: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: structure of gp41 t21/cp621-652
41c2vfjA_



not modelled 6.9 30
PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor;
PDBTitle: structure of the a20 ovarian tumour (otu) domain
42c6cp8B_



not modelled 6.8 25
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:cdia;
PDBTitle: contact-dependent growth inhibition toxin-immunity protein complex2 from from e. coli 3006
43c2kgfA_



not modelled 6.7 20
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: n-terminal domain of capsid protein from the mason-pfizer2 monkey virus
44c2v4xA_



not modelled 6.5 16
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein p27;
PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain
45d1ufga_



not modelled 6.1 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Lamin A/C globular tail domain
Family:Lamin A/C globular tail domain
46c3dkbA_



not modelled 6.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3;
PDBTitle: crystal structure of a20, 2.5 angstrom
47c5xywD_



not modelled 5.5 13
PDB header:protein binding
Chain: D: PDB Molecule:gd21652;
PDBTitle: crystal structure of drosophila simulans rhino chromoshadow domain in2 complex with n-terminal domain
48c1ep3B_



not modelled 5.3 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit);
PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.
49c3zv0D_



not modelled 5.3 15
PDB header:cell cycle
Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4;
PDBTitle: structure of the shq1p-cbf5p complex
50d1ifra_



not modelled 5.3 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Lamin A/C globular tail domain
Family:Lamin A/C globular tail domain

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Transmembrane helix prediction 

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