Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1736c_(narX)_1962235_1964193
DateFri Aug 2 13:30:34 BST 2019
Unique Job ID9cabb749944431cd
SequenceVTVTPRTGSR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:91.636 Y:76.839 Z:60.977
Model (left) based on template d1y5ia2
Top template information
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
Confidence and coverage
Confidence:100.0% Coverage: 38%
245 residues ( 38% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
462 residues ( 71%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1y5ia2



100.0 60
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
2c1y5iA_



100.0 60
PDB header:oxidoreductase
Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain;
PDBTitle: the crystal structure of the narghi mutant nari-k86a
3c2ivfA_



100.0 34
PDB header:oxidoreductase
Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
4d1y5ic1



100.0 30
Fold:Heme-binding four-helical bundle
Superfamily:Respiratory nitrate reductase 1 gamma chain
Family:Respiratory nitrate reductase 1 gamma chain
5c5ch7E_



100.0 45
PDB header:oxidoreductase
Chain: E: PDB Molecule:dmso reductase family type ii enzyme, molybdopterin
PDBTitle: crystal structure of the perchlorate reductase pcrab - phe164 gate2 switch intermediate - from azospira suillum ps
6c1vlfQ_



100.0 22
PDB header:oxidoreductase
Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol transhydroxylase from2 pelobacter acidigallici complexed with inhibitor 1,2,4,5-3 tetrahydroxy-benzene
7c2nyaF_



100.0 21
PDB header:oxidoreductase
Chain: F: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli
8d1vlfm2



100.0 30
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
9c2v45A_



100.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand
10c6cz7C_



100.0 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:arra;
PDBTitle: the arsenate respiratory reductase (arr) complex from shewanella sp.2 ana-3
11d1ogya2



100.0 21
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
12d2iv2x2



100.0 23
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
13d2jioa2



100.0 27
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
14c1ogyA_



100.0 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides
15c2iv2X_



100.0 23
PDB header:oxidoreductase
Chain: X: PDB Molecule:formate dehydrogenase h;
PDBTitle: reinterpretation of reduced form of formate dehydrogenase h from e.2 coli
16d1h0ha2



100.0 21
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
17d1tmoa2



99.9 18
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
18c1eu1A_



99.9 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:dimethyl sulfoxide reductase;
PDBTitle: the crystal structure of rhodobacter sphaeroides dimethylsulfoxide2 reductase reveals two distinct molybdenum coordination environments.
19c1kqgA_



99.9 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit;
PDBTitle: formate dehydrogenase n from e. coli
20c1h0hA_



99.9 21
PDB header:electron transport
Chain: A: PDB Molecule:formate dehydrogenase subunit alpha;
PDBTitle: tungsten containing formate dehydrogenase from desulfovibrio gigas
21c2vpyE_



not modelled 99.9 30
PDB header:oxidoreductase
Chain: E: PDB Molecule:thiosulfate reductase;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
22c2e7zA_



not modelled 99.9 20
PDB header:lyase
Chain: A: PDB Molecule:acetylene hydratase ahy;
PDBTitle: acetylene hydratase from pelobacter acetylenicus
23c1tmoA_



not modelled 99.9 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:trimethylamine n-oxide reductase;
PDBTitle: trimethylamine n-oxide reductase from shewanella massilia
24c1h5nC_



not modelled 99.9 29
PDB header:oxidoreductase
Chain: C: PDB Molecule:dmso reductase;
PDBTitle: dmso reductase modified by the presence of dms and air
25d1eu1a2



not modelled 99.9 28
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
26d1kqfa2



not modelled 99.9 26
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
27d1dmra2



not modelled 99.9 29
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
28c4aayE_



not modelled 99.9 19
PDB header:oxidoreductase
Chain: E: PDB Molecule:aroa;
PDBTitle: crystal structure of the arsenite oxidase protein complex2 from rhizobium species strain nt-26
29c1g8jC_



not modelled 99.9 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:arsenite oxidase;
PDBTitle: crystal structure analysis of arsenite oxidase from2 alcaligenes faecalis
30c5lnk3_



not modelled 99.8 15
PDB header:oxidoreductase
Chain: 3: PDB Molecule:mitochondrial complex i, 75 kda subunit;
PDBTitle: entire ovine respiratory complex i
31d1g8ka2



not modelled 99.8 15
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
32d2fug32



not modelled 99.8 21
Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
33c6gcsA_



not modelled 99.8 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:75-kda protein (nuam);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
34c2fugC_



not modelled 99.7 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
35c6btmB_



not modelled 99.7 15
PDB header:membrane protein
Chain: B: PDB Molecule:alternative complex iii subunit b;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
36d2o9xa1



not modelled 99.6 26
Fold:TorD-like
Superfamily:TorD-like
Family:TorD-like
37c2o9xA_



not modelled 99.5 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:reductase, assembly protein;
PDBTitle: crystal structure of a putative redox enzyme maturation protein from2 archaeoglobus fulgidus
38c6f0kB_



not modelled 99.5 16
PDB header:membrane protein
Chain: B: PDB Molecule:fe-s-cluster-containing hydrogenase;
PDBTitle: alternative complex iii
39c5t5mB_



not modelled 99.4 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdb;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, trigonal form at 2.5 a.
40d1s9ua_



not modelled 98.4 16
Fold:TorD-like
Superfamily:TorD-like
Family:TorD-like
41d1n1ca_



not modelled 98.3 15
Fold:TorD-like
Superfamily:TorD-like
Family:TorD-like
42d2idga1



not modelled 93.2 11
Fold:TorD-like
Superfamily:TorD-like
Family:TorD-like
43c5oc0A_



not modelled 70.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome b561;
PDBTitle: structure of e. coli superoxide oxidase
44d1kqfc_



not modelled 68.1 15
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Formate dehydrogenase N, cytochrome (gamma) subunit
45c2kluA_



not modelled 64.7 21
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4
46c5iydN_



not modelled 62.3 41
PDB header:transcription, transferase/dna/rna
Chain: N: PDB Molecule:transcription initiation factor iia subunit 1;
PDBTitle: human core-pic in the initial transcribing state (no iis)
47c5n0cB_



not modelled 61.1 12
PDB header:toxin
Chain: B: PDB Molecule:tetanus toxin;
PDBTitle: crystal structure of the tetanus neurotoxin in complex with gm1a
48c1h3oA_



not modelled 61.0 23
PDB header:transcription/tbp-associated factors
Chain: A: PDB Molecule:transcription initiation factor tfiid 135 kda subunit;
PDBTitle: crystal structure of the human taf4-taf12 (tafii135-tafii20) complex
49d1h3oa_



not modelled 61.0 23
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
50c3kdpH_



not modelled 56.7 19
PDB header:hydrolase
Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
51c3kdpG_



not modelled 56.7 19
PDB header:hydrolase
Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the sodium-potassium pump
52c2uuiA_



not modelled 51.2 22
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
53c2jo1A_



not modelled 50.3 26
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
54c5gasN_



not modelled 50.3 15
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
55d1ytfc_



not modelled 49.6 50
Fold:Transcription factor IIA (TFIIA), beta-barrel domain
Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain
Family:Transcription factor IIA (TFIIA), beta-barrel domain
56d1nvpc_



not modelled 49.6 41
Fold:Transcription factor IIA (TFIIA), beta-barrel domain
Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain
Family:Transcription factor IIA (TFIIA), beta-barrel domain
57c1nvpC_



not modelled 49.6 41
PDB header:transcription/dna
Chain: C: PDB Molecule:transcription initiation factor iia beta chain;
PDBTitle: human tfiia/tbp/dna complex
58c2mkvA_



not modelled 48.8 26
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
59c2jp3A_



not modelled 46.7 11
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
60c1nh2C_



not modelled 46.6 41
PDB header:transcription/dna
Chain: C: PDB Molecule:transcription initiation factor iia large chain;
PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex
61d1nh2c_



not modelled 46.6 41
Fold:Transcription factor IIA (TFIIA), beta-barrel domain
Superfamily:Transcription factor IIA (TFIIA), beta-barrel domain
Family:Transcription factor IIA (TFIIA), beta-barrel domain
62c1rm1C_



not modelled 45.8 41
PDB header:transcription/dna
Chain: C: PDB Molecule:transcription initiation factor iia large chain;
PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex
63c3ffzA_



not modelled 45.8 28
PDB header:hydrolase
Chain: A: PDB Molecule:botulinum neurotoxin type e;
PDBTitle: domain organization in clostridium butulinum neurotoxin2 type e is unique: its implication in faster translocation
64c5ir6B_



not modelled 45.4 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
65c2bp7F_



not modelled 44.4 36
PDB header:oxidoreductase
Chain: F: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit;
PDBTitle: new crystal form of the pseudomonas putida branched-chain2 dehydrogenase (e1)
66c5yk7A_



not modelled 42.9 32
PDB header:lipid transport
Chain: A: PDB Molecule:maintenance of mitochondrial morphology protein 1;
PDBTitle: crystal structure of mdm12-mmm1 complex
67c1olsB_



not modelled 38.6 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:2-oxoisovalerate dehydrogenase beta subunit;
PDBTitle: roles of his291-alpha and his146-beta' in the reductive acylation2 reaction catalyzed by human branched-chain alpha-ketoacid3 dehydrogenase
68d1z05a2



not modelled 38.0 12
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
69c5kteA_



not modelled 37.1 14
PDB header:transport protein/immune system
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of deinococcus radiodurans mnth, an nramp-family2 transition metal transporter
70c2kncA_



not modelled 36.8 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
71c3s2xB_



not modelled 34.7 19
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha;
PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain
72d2ozlb1



not modelled 34.3 32
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase Pyr module
73c3hfxA_



not modelled 31.1 8
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
74c6ithA_



not modelled 29.9 26
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
75d2r6gf1



not modelled 29.7 16
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
76d1qs0b1



not modelled 28.8 33
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase Pyr module
77c2kncB_



not modelled 28.6 25
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
78d1umdb1



not modelled 27.2 42
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase Pyr module
79c5h92A_



not modelled 27.1 17
PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:sulfite reductase [ferredoxin], chloroplastic;
PDBTitle: crystal structure of the complex between maize sulfite reductase and2 ferredoxin in the form-3 crystal
80d2cmda1



not modelled 26.4 23
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
81c3e4hA_



not modelled 26.2 47
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
82d1prtb1



not modelled 25.6 27
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
83c1fftG_



not modelled 24.7 13
PDB header:oxidoreductase
Chain: G: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
84c2zxeG_



not modelled 23.9 25
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
85c2k1aA_



not modelled 23.7 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
86d2hoea2



not modelled 23.5 6
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
87c4ainB_



not modelled 23.0 12
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
88c5m4sA_



not modelled 23.0 41
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor iia subunit 2,transcription
PDBTitle: transcription factor tfiia as a single chain protein
89d2bfdb1



not modelled 22.8 32
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase Pyr module
90c6hwhB_



not modelled 22.7 15
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
91c1ni4D_



not modelled 22.5 28
PDB header:oxidoreductase
Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component: beta
PDBTitle: human pyruvate dehydrogenase
92c2k1kA_



not modelled 21.8 31
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
93c2k1lA_



not modelled 21.8 31
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
94c2k1kB_



not modelled 21.8 31
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
95c2k1lB_



not modelled 21.8 31
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
96d1w85b1



not modelled 21.0 28
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase Pyr module
97d1rkta2



not modelled 21.0 9
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
98c2jwmA_



not modelled 20.6 37
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: nmr spatial srtucture of ternary complex kalata b7/mn2+/dpc2 micelle
99c5xcoB_



not modelled 20.5 45
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:ace-arg-arg-arg-arg-cys-pro-leu-tyr-ile-ser-tyr-asp-pro-
PDBTitle: crystal structure of human k-ras g12d mutant in complex with gdp and2 cyclic inhibitory peptide

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below