Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1740_(-)_1967712_1967924
DateFri Aug 2 13:30:34 BST 2019
Unique Job IDb336b5b9bc4e8335
SequenceMELAARMGET ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.545 Y:33.108 Z:20.628
Model (left) based on template c4xgqD_
Top template information
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
Confidence and coverage
Confidence: 98.5% Coverage: 41%
29 residues ( 41% of your sequence) have been modelled with 98.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4xgqD_
98.5 69
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
2c4xgqB_
98.5 69
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
3c4xgrH_
97.9 64
PDB header:toxin/antitoxin
Chain: H: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
4c4xgrF_
97.7 68
PDB header:toxin/antitoxin
Chain: F: PDB Molecule:antitoxin vapb30;
PDBTitle: crystal structure of addiction module from mycobacterial species
5c4d8jD_
58.9 28
PDB header:dna binding protein
Chain: D: PDB Molecule:macrodomain ter protein;
PDBTitle: structure of e. coli matp-mats complex
6c3lt6D_
40.0 19
PDB header:cell adhesion
Chain: D: PDB Molecule:adhesin yada;
PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the mutant 4 structure
7c3lt7D_
33.2 18
PDB header:cell adhesion
Chain: D: PDB Molecule:adhesin yada;
PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the m3 mutant structure
8d2jeka1
27.5 20
Fold:Rv1873-like
Superfamily:Rv1873-like
Family:Rv1873-like
9c4kvuC_
26.4 37
PDB header:de novo protein
Chain: C: PDB Molecule:6-helix coiled coil cc-hex-l17c-w224bf;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-l17c-w224bf
10c5bs7F_
26.1 67
PDB header:transcription regulator
Chain: F: PDB Molecule:protein spt2 homolog;
PDBTitle: structure of histone h3/h4 in complex with spt2
11c5bsaF_
25.6 67
PDB header:transcription regulator
Chain: F: PDB Molecule:protein spt2 homolog;
PDBTitle: structure of histone h3/h4 in complex with spt2
12c4kvuA_
22.9 37
PDB header:de novo protein
Chain: A: PDB Molecule:6-helix coiled coil cc-hex-l17c-w224bf;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-l17c-w224bf
13c4kvuB_
22.9 37
PDB header:de novo protein
Chain: B: PDB Molecule:6-helix coiled coil cc-hex-l17c-w224bf;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-l17c-w224bf
14c4zrjB_
22.6 21
PDB header:signaling protein
Chain: B: PDB Molecule:merlin;
PDBTitle: structure of merlin-ferm and ctd
15c1wkbA_
18.2 18
PDB header:ligase
Chain: A: PDB Molecule:leucyl-trna synthetase;
PDBTitle: crystal structure of leucyl-trna synthetase from the2 archaeon pyrococcus horikoshii reveals a novel editing3 domain orientation
16c5bsaE_
17.9 50
PDB header:transcription regulator
Chain: E: PDB Molecule:protein spt2 homolog;
PDBTitle: structure of histone h3/h4 in complex with spt2
17d1uf2c1
16.9 28
Fold:A virus capsid protein alpha-helical domain
Superfamily:A virus capsid protein alpha-helical domain
Family:Phytoreovirus capsid
18c1uf2F_
15.6 28
PDB header:virus
Chain: F: PDB Molecule:outer capsid protein p8;
PDBTitle: the atomic structure of rice dwarf virus (rdv)
19c2w6jG_
14.8 27
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase during2 controlled dehydration: hydration state 5.
20c3go5A_
14.3 18
PDB header:gene regulation
Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains;
PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution
21c1wloA_
not modelled 14.2 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sufe protein;
PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8
22c4lgjA_
not modelled 14.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure and mechanism of a type iii secretion protease
23c3r4hD_
not modelled 13.9 40
PDB header:de novo protein
Chain: D: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
24c6f5dG_
not modelled 13.9 13
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase gamma subunit;
PDBTitle: trypanosoma brucei f1-atpase
25d1mzga_
not modelled 13.7 21
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
26c5m1gB_
not modelled 13.6 34
PDB header:viral protein
Chain: B: PDB Molecule:gag protein;
PDBTitle: structure of a spumaretrovirus gag central domain reveals an ancient2 retroviral capsid
27c3r4hE_
not modelled 13.3 40
PDB header:de novo protein
Chain: E: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
28c2xokG_
not modelled 12.5 24
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial;
PDBTitle: refined structure of yeast f1c10 atpase complex to 3 a resolution
29c2kelB_
not modelled 12.5 50
PDB header:transcription repressor
Chain: B: PDB Molecule:uncharacterized protein 56b;
PDBTitle: structure of the transcription regulator svtr from the2 hyperthermophilic archaeal virus sirv1
30c3r4hF_
not modelled 12.4 40
PDB header:de novo protein
Chain: F: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
31c3r4hA_
not modelled 12.4 40
PDB header:de novo protein
Chain: A: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
32c3r4hC_
not modelled 12.4 40
PDB header:de novo protein
Chain: C: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
33c3r4hB_
not modelled 12.4 40
PDB header:de novo protein
Chain: B: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
34c3terA_
not modelled 12.2 27
PDB header:metal binding protein
Chain: A: PDB Molecule:mammalian stromal interaction molecule-1;
PDBTitle: crystal structure of soar domain with inhibition helix from c. elegans
35c4k6lG_
not modelled 12.2 30
PDB header:toxin
Chain: G: PDB Molecule:putative pertussis-like toxin subunit;
PDBTitle: structure of typhoid toxin
36c4z9dA_
not modelled 12.1 30
PDB header:transferase
Chain: A: PDB Molecule:pertussis toxin-like subunit arta;
PDBTitle: ecplta
37c4ariA_
not modelled 11.9 50
PDB header:ligase/rna
Chain: A: PDB Molecule:leucine--trna ligase;
PDBTitle: ternary complex of e. coli leucyl-trna synthetase, trna(leu) and the2 benzoxaborole an2679 in the editing conformation
38c5ca8A_
not modelled 11.7 58
PDB header:hydrolase
Chain: A: PDB Molecule:protein sey1;
PDBTitle: structures of the yeast dynamin-like gtpase sey1p in complex with gdp
39d1mnta_
not modelled 11.7 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Arc/Mnt-like phage repressors
40c4xd7G_
not modelled 11.1 21
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase gamma chain;
PDBTitle: structure of thermophilic f1-atpase inhibited by epsilon subunit
41c4lgiD_
not modelled 10.9 27
PDB header:hydrolase
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: n-terminal truncated nlec structure
42c4z9cA_
not modelled 10.9 30
PDB header:transferase
Chain: A: PDB Molecule:pertussis toxin-like subunit arta;
PDBTitle: ecpltab oxidized
43c4tlwA_
not modelled 10.9 38
PDB header:toxin, transferase
Chain: A: PDB Molecule:adp-ribosylating toxin cards;
PDBTitle: cards toxin, full-length
44c1wz2B_
not modelled 10.8 20
PDB header:ligase/rna
Chain: B: PDB Molecule:leucyl-trna synthetase;
PDBTitle: the crystal structure of leucyl-trna synthetase and trna(leucine)2 complex
45d1ni7a_
not modelled 10.3 7
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
46c3oaaO_
not modelled 10.1 21
PDB header:hydrolase/transport protein
Chain: O: PDB Molecule:atp synthase gamma chain;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
47c5lqxG_
not modelled 9.7 24
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase gamma subunit;
PDBTitle: structure of f-atpase from pichia angusta, state3
48c4r33A_
not modelled 9.6 42
PDB header:lyase
Chain: A: PDB Molecule:nosl;
PDBTitle: x-ray structure of the tryptophan lyase nosl with tryptophan and s-2 adenosyl-l-homocysteine bound
49c3teqB_
not modelled 9.6 45
PDB header:signaling protein
Chain: B: PDB Molecule:stromal interaction molecule 1;
PDBTitle: crystal structure of soar domain
50c2xpiE_
not modelled 9.4 50
PDB header:cell cycle
Chain: E: PDB Molecule:anaphase-promoting complex subunit hcn1 hcn1/cdc26,20s
PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1
51c2mc7A_
not modelled 9.0 38
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
52c4hsrA_
not modelled 8.9 41
PDB header:hydrolase
Chain: A: PDB Molecule:glutaryl-7-aminocephalosporanic acid acylase alpha chain;
PDBTitle: crystal structure of a class iii engineered cephalosporin acylase
53c2bytD_
not modelled 8.9 50
PDB header:synthetase
Chain: D: PDB Molecule:leucyl-trna synthetase;
PDBTitle: thermus thermophilus leucyl-trna synthetase complexed with2 a trnaleu transcript in the post-editing conformation
54c2dcqA_
not modelled 8.9 38
PDB header:unknown function
Chain: A: PDB Molecule:putative protein at4g01050;
PDBTitle: fully automated nmr structure determination of the2 rhodanese homology domain at4g01050(175-295) from3 arabidopsis thaliana
55c5ady6_
not modelled 8.9 22
PDB header:ribosome
Chain: 6: PDB Molecule:gtpase hflx;
PDBTitle: cryo-em structures of the 50s ribosome subunit bound with hflx
56c5dazA_
not modelled 8.8 22
PDB header:transferase
Chain: A: PDB Molecule:scabin;
PDBTitle: crystal structure of scabin, a mono-adp-ribosyltransferase from2 streptomyces scabies
57c1qu2A_
not modelled 8.8 50
PDB header:ligase/rna
Chain: A: PDB Molecule:isoleucyl-trna synthetase;
PDBTitle: insights into editing from an ile-trna synthetase structure2 with trna(ile) and mupirocin
58c6re1S_
not modelled 8.8 23
PDB header:proton transport
Chain: S: PDB Molecule:atp synthase gamma chain, mitochondrial;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 2a,2 focussed refinement of f1 head and rotor
59c6q8aA_
not modelled 8.7 40
PDB header:ligase
Chain: A: PDB Molecule:leucine--trna ligase;
PDBTitle: neisseria gonorrhoeae leucyl-trna synthetase in complex with 5'-o-(n-2 (l-leucyl)-sulfamoyl)cytidine
60c6fkig_
not modelled 8.5 21
PDB header:membrane protein
Chain: G: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
61c6ax5A_
not modelled 8.5 25
PDB header:nuclear protein
Chain: A: PDB Molecule:swi/snf-related matrix-associated actin-dependent regulator
PDBTitle: rpt1 region of ini1/snf5/smarcb1_human - swi/snf-related matrix-2 associated actin-dependent regulator of chromatin subfamily b member3 1.
62c5ah5B_
not modelled 8.4 50
PDB header:ligase/rna
Chain: B: PDB Molecule:leucine--trna ligase;
PDBTitle: crystal structure of the ternary complex of agrobacterium2 radiobacter k84 agnb2 leurs-trna-leuams
63c5m1hA_
not modelled 8.4 33
PDB header:viral protein
Chain: A: PDB Molecule:gag protein;
PDBTitle: structure of a spumaretrovirus gag central domain reveals an ancient2 retroviral capsid
64c3r4aA_
not modelled 8.3 41
PDB header:de novo protein
Chain: A: PDB Molecule:coiled coil helix cc-tet;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet
65c2xpiB_
not modelled 8.2 50
PDB header:cell cycle
Chain: B: PDB Molecule:anaphase-promoting complex subunit hcn1 hcn1/cdc26,20s
PDBTitle: crystal structure of apc/c hetero-tetramer cut9-hcn1
66d1em7a_
not modelled 8.0 35
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
67c2yy0D_
not modelled 7.9 40
PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
68c3r4aD_
not modelled 7.9 41
PDB header:de novo protein
Chain: D: PDB Molecule:coiled coil helix cc-tet;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet
69c3r4aC_
not modelled 7.8 41
PDB header:de novo protein
Chain: C: PDB Molecule:coiled coil helix cc-tet;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet
70c3r4aB_
not modelled 7.8 41
PDB header:de novo protein
Chain: B: PDB Molecule:coiled coil helix cc-tet;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet
71c1ileA_
not modelled 7.7 45
PDB header:aminoacyl-trna synthetase
Chain: A: PDB Molecule:isoleucyl-trna synthetase;
PDBTitle: isoleucyl-trna synthetase
72c2akfB_
not modelled 7.6 38
PDB header:protein binding
Chain: B: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
73c2akfA_
not modelled 7.6 38
PDB header:protein binding
Chain: A: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
74c2akfC_
not modelled 7.6 38
PDB header:protein binding
Chain: C: PDB Molecule:coronin-1a;
PDBTitle: crystal structure of the coiled-coil domain of coronin 1
75c6ajnF_
not modelled 7.6 23
PDB header:toxin
Chain: F: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: crystal structure of atatr bound with accoa
76d1fd6a_
not modelled 7.2 40
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
77c1tiiA_
not modelled 7.1 33
PDB header:enterotoxin
Chain: A: PDB Molecule:heat labile enterotoxin type iib;
PDBTitle: escherichia coli heat labile enterotoxin type iib
78d2jdig1
not modelled 7.1 30
Fold:Pyruvate kinase C-terminal domain-like
Superfamily:ATP synthase (F1-ATPase), gamma subunit
Family:ATP synthase (F1-ATPase), gamma subunit
79c2yskA_
not modelled 7.0 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttha1432;
PDBTitle: crystal structure of a hypothetical protein ttha1432 from thermus2 thermophilus
80c2w6hG_
not modelled 6.9 30
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase during2 controlled dehydration: hydration state 4a.
81d2a5db1
not modelled 6.9 44
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:ADP-ribosylating toxins
82c1obhA_
not modelled 6.8 50
PDB header:synthetase
Chain: A: PDB Molecule:leucyl-trna synthetase;
PDBTitle: leucyl-trna synthetase from thermus thermophilus complexed2 with a pre-transfer editing substrate analogue in both3 synthetic active site and editing site
83c6q45G_
not modelled 6.8 23
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase gamma chain;
PDBTitle: f1-atpase from fusobacterium nucleatum
84c4egcA_
not modelled 6.7 58
PDB header:transcription/hydrolase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, homeobox protein six1
PDBTitle: crystal structure of mbp-fused human six1 bound to human eya2 eya2 domain
85c3m92B_
not modelled 6.5 83
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ycin;
PDBTitle: the structure of ycin, an unchracterized protein from shigella2 flexneri.
86c5vwwD_
not modelled 6.4 38
PDB header:apoptosis
Chain: D: PDB Molecule:bcl-2-like protein 11;
PDBTitle: bak core latch dimer in complex with bim-rt - tetragonal
87c3g5jA_
not modelled 6.4 22
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:putative atp/gtp binding protein;
PDBTitle: crystal structure of n-terminal domain of putative atp/gtp binding2 protein from clostridium difficile 630
88c2llzA_
not modelled 6.4 42
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yjdk;
PDBTitle: ghos (yjdk) monomer
89c4qvrA_
not modelled 6.4 33
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized hypothetical protein ftt_1539c;
PDBTitle: 2.3 angstrom crystal structure of hypothetical protein ftt1539c from2 francisella tularensis.
90c3eabK_
not modelled 6.0 25
PDB header:cell cycle
Chain: K: PDB Molecule:chmp1b;
PDBTitle: crystal structure of spastin mit in complex with escrt iii
91d1fcla_
not modelled 6.0 40
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
92d1pgaa_
not modelled 5.8 40
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
93c2jwuA_
not modelled 5.8 20
PDB header:de novo protein
Chain: A: PDB Molecule:gb88;
PDBTitle: solution nmr structures of two designed proteins with 88%2 sequence identity but different fold and function
94d1gb4a_
not modelled 5.7 30
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
95c3fksY_
not modelled 5.7 24
PDB header:hydrolase
Chain: Y: PDB Molecule:atp synthase subunit gamma, mitochondrial;
PDBTitle: yeast f1 atpase in the absence of bound nucleotides
96c3gkuB_
not modelled 5.7 33
PDB header:rna binding protein
Chain: B: PDB Molecule:probable rna-binding protein;
PDBTitle: crystal structure of a probable rna-binding protein from clostridium2 symbiosum atcc 14940
97d1p7ea_
not modelled 5.5 35
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
98c2dytA_
not modelled 5.3 38
PDB header:ligase
Chain: A: PDB Molecule:autophagy-related protein 3;
PDBTitle: the crystal structure of saccharomyces cerevisiae atg3
99c5dn6G_
not modelled 5.3 25
PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase gamma chain;
PDBTitle: atp synthase from paracoccus denitrificans

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