Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1748_(-)_1976607_1977338
DateFri Aug 2 13:30:35 BST 2019
Unique Job IDb359ba81d657e7e7
SequenceLPGGVCSGRP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:15.544 Y:11.172 Z:31.834
Model (left) based on template c6c6lN_
Top template information
PDB header:membrane protein
Chain: N: PDB Molecule:v0 assembly protein 1;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
Confidence and coverage
Confidence: 80.9% Coverage: 8%
20 residues ( 8% of your sequence) have been modelled with 80.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6c6lN_



80.9 30
PDB header:membrane protein
Chain: N: PDB Molecule:v0 assembly protein 1;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
2c2qn5B_



19.4 64
PDB header:hydrolase inhibitor/hydrolase
Chain: B: PDB Molecule:bowman-birk type bran trypsin inhibitor;
PDBTitle: crystal structure and functional study of the bowman-birk2 inhibitor from rice bran in complex with bovine trypsin
3c5ganA_



19.2 23
PDB header:transcription
Chain: A: PDB Molecule:pre-mrna-splicing factor 8;
PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
4c3ktcB_



16.7 10
PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase;
PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution
5c5doqC_



16.0 39
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
6c5ir6C_



16.0 39
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative membrane protein;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
7c2mf3A_



14.7 55
PDB header:toxin
Chain: A: PDB Molecule:u2-segestritoxin-sf1a;
PDBTitle: sgtx-sf1a
8c5ow2A_



12.4 57
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein;
PDBTitle: japanese encephalitis virus capsid protein
9d1ks9a1



12.2 23
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:Ketopantoate reductase PanE
10c4xu6A_



12.1 58
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of cross-linked mvins r77c trimer at 1.9a resolution
11c3ez0D_



10.7 18
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein with ferritin-like fold;
PDBTitle: crystal structure of protein of unknown function with ferritin-like2 fold (yp_832262.1) from arthrobacter sp. fb24 at 2.33 a resolution
12c4uy87_



10.3 80
PDB header:ribosome
Chain: 7: PDB Molecule:tryptophanase;
PDB Fragment:residues 7-85; PDBTitle: molecular basis for the ribosome functioning as a l-tryptophan sensor2 - cryo-em structure of a tnac stalled e.coli ribosome
13c4b6aX_



9.1 29
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l25;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
14c3tufA_



8.8 27
PDB header:signaling protein
Chain: A: PDB Molecule:stage iii sporulation protein ah;
PDBTitle: structure of the spoiiq-spoiiiah pore forming complex.
15c5wdaL_



8.7 50
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
16d1sfka_



8.2 46
Fold:Flavivirus capsid protein C
Superfamily:Flavivirus capsid protein C
Family:Flavivirus capsid protein C
17d2pila_



8.1 29
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
18c5lj3F_



8.1 50
PDB header:splicing
Chain: F: PDB Molecule:pre-mrna-splicing factor cwc25;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
19c3uz0A_



7.9 27
PDB header:transport protein
Chain: A: PDB Molecule:stage iii sporulation protein ah;
PDBTitle: crystal structure of spoiiiah and spoiiq complex
20c2mi2A_



7.8 26
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
21c3mp7B_



not modelled 7.3 50
PDB header:protein transport
Chain: B: PDB Molecule:preprotein translocase subunit sece;
PDBTitle: lateral opening of a translocon upon entry of protein suggests the2 mechanism of insertion into membranes
22d1rhzb_



not modelled 7.1 33
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
23c2r6fA_



not modelled 7.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:excinuclease abc subunit a;
PDBTitle: crystal structure of bacillus stearothermophilus uvra
24c2ovcA_



not modelled 7.0 23
PDB header:transport protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily kqt member 4;
PDBTitle: crystal structure of a coiled-coil tetramerization domain from kv7.42 channels
25c4atbC_



not modelled 7.0 34
PDB header:immune system
Chain: C: PDB Molecule:interleukin enhancer-binding factor 2;
PDBTitle: crystal structure of the nf90-nf45 dimerisation domain2 complex with ctp
26c4a17R_



not modelled 6.8 29
PDB header:ribosome
Chain: R: PDB Molecule:rpl23a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 2.
27c1cn3F_



not modelled 6.7 78
PDB header:viral protein
Chain: F: PDB Molecule:fragment of coat protein vp2;
PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry
28c3j39X_



not modelled 6.7 29
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l23a;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
29c6itcB_



not modelled 6.6 33
PDB header:protein transport
Chain: B: PDB Molecule:translocating peptide;
PDBTitle: structure of a substrate engaged seca-secy protein translocation2 machine
30c6hu9e_



not modelled 6.6 21
PDB header:oxidoreductase/electron transport
Chain: E: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
31c3lr6A_



not modelled 6.5 9
PDB header:structural protein
Chain: A: PDB Molecule:major ampullate spidroin 1;
PDBTitle: self-assembly of spider silk proteins is controlled by a ph-sensitive2 relay
32c4wfbQ_



not modelled 6.5 38
PDB header:ribosome
Chain: Q: PDB Molecule:50s ribosomal protein l23;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with bc-3205
33c6ansD_



not modelled 6.3 17
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 burkholderia cenocepacia
34d2joka1



not modelled 6.3 18
Fold:SopE-like GEF domain
Superfamily:SopE-like GEF domain
Family:SopE-like GEF domain
35d1muga_



not modelled 6.2 22
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Mug-like
36c3zf7X_



not modelled 6.2 36
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l23a;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
37c4g4mB_



not modelled 6.2 30
PDB header:de novo protein
Chain: B: PDB Molecule:alpha4f3(6-13);
PDBTitle: crystal structure of the de novo designed fluorinated peptide2 alpha4f3(6-13)
38c4g4mA_



not modelled 6.1 30
PDB header:de novo protein
Chain: A: PDB Molecule:alpha4f3(6-13);
PDBTitle: crystal structure of the de novo designed fluorinated peptide2 alpha4f3(6-13)
39c5yh1A_



not modelled 6.1 14
PDB header:ribosomal protein
Chain: A: PDB Molecule:member of s1p family of ribosomal proteins;
PDBTitle: member of s1p family of ribosomal proteins pf0399 dhh domain
40c5iz2A_



not modelled 6.1 13
PDB header:structural protein
Chain: A: PDB Molecule:major ampullate spidroin 1a;
PDBTitle: crystal structure of the n. clavipes spidroin ntd at ph 6.5
41c6akmA_



not modelled 5.9 32
PDB header:protein binding
Chain: A: PDB Molecule:suppressor of ikbke 1;
PDBTitle: crystal structure of slmap-sike1 complex
42c6re80_



not modelled 5.8 83
PDB header:proton transport
Chain: 0: PDB Molecule:asa-10: polytomella f-atp synthase associated subunit 10;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 2d,2 composite map
43c5wx9A_



not modelled 5.6 60
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:ethylene-responsive transcription factor erf096;
PDBTitle: crystal structure of aterf96 with gcc-box
44c5dkoA_



not modelled 5.6 71
PDB header:replication
Chain: A: PDB Molecule:cell division protein zapd;
PDBTitle: the structure of escherichia coli zapd
45c2ogdB_



not modelled 5.6 13
PDB header:transferase
Chain: B: PDB Molecule:farnesyl pyrophosphate synthase;
PDBTitle: t. brucei farnesyl diphosphate synthase complexed with bisphosphonate2 bph-527
46c5f56A_



not modelled 5.5 44
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:single-stranded-dna-specific exonuclease;
PDBTitle: structure of recj complexed with dna and ssb-ct
47d1r6ra_



not modelled 5.4 31
Fold:Flavivirus capsid protein C
Superfamily:Flavivirus capsid protein C
Family:Flavivirus capsid protein C
48c1r6rA_



not modelled 5.4 31
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold
49d1t92a_



not modelled 5.4 43
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pseudopilin
50c2jowA_



not modelled 5.3 16
PDB header:transport protein
Chain: A: PDB Molecule:protein prgi;
PDBTitle: differences in the electrostatic surfaces of the type iii2 secretion needle proteins
51c6c4qA_



not modelled 5.2 10
PDB header:transport protein
Chain: A: PDB Molecule:polyketide synthase pks13;
PDBTitle: 1.16 angstrom resolution crystal structure of acyl carrier protein2 domain (residues 1-100) of polyketide synthase pks13 from3 mycobacterium tuberculosis
52c3a7mA_



not modelled 5.0 14
PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:flagellar protein flit;
PDBTitle: structure of flit, the flagellar type iii chaperone for flid
53d1xa6a2



not modelled 5.0 40
Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain

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Transmembrane helix prediction 

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