Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1762c_(-)_1995061_1995849
DateFri Aug 2 13:30:36 BST 2019
Unique Job IDdb0ab4f90bd378f6
SequenceMQSSSLDPVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.756 Y:42.079 Z:55.730
Model (left) based on template c1y2iC_
Top template information
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein s0862;
PDBTitle: crystal structure of mcsg target apc27401 from shigella flexneri
Confidence and coverage
Confidence: 99.9% Coverage: 33%
86 residues ( 33% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
194 residues ( 74%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1y2iC_
99.9 27
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:hypothetical protein s0862;
PDBTitle: crystal structure of mcsg target apc27401 from shigella flexneri
2d1y2ia_
99.9 27
Fold:Dodecin subunit-like
Superfamily:YbjQ-like
Family:YbjQ-like
3d1vr4a1
99.9 22
Fold:Dodecin subunit-like
Superfamily:YbjQ-like
Family:YbjQ-like
4c3qkbB_
99.7 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution
5c2y1bA_
94.7 23
PDB header:membrane protein
Chain: A: PDB Molecule:putative outer membrane protein, signal;
PDBTitle: crystal structure of the e. coli outer membrane lipoprotein rcsf
6c2jz7A_
93.9 19
PDB header:selenium-binding protein
Chain: A: PDB Molecule:selenium binding protein;
PDBTitle: solution nmr structure of selenium-binding protein from2 methanococcus vannielii
7c2odaB_
63.4 14
PDB header:protein binding
Chain: B: PDB Molecule:hypothetical protein pspto_2114;
PDBTitle: crystal structure of pspto_2114
8d1geqa_
53.9 14
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
9c2qw5B_
51.0 11
PDB header:isomerase
Chain: B: PDB Molecule:xylose isomerase-like tim barrel;
PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution
10c2nawA_
36.3 73
PDB header:toxin
Chain: A: PDB Molecule:exendin-4, alpha/kappa-conotoxin pl14a chimera;
PDBTitle: nmr solution structure of exendin-4/conotoxin chimera (ex-4[1-2 27]/pl14a)
11c1d0rA_
32.4 73
PDB header:hormone/growth factor
Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide;
PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide in2 trifluoroethanol/water
12c6ge2A_
26.6 60
PDB header:hormone
Chain: A: PDB Molecule:exendin-4;
PDBTitle: exendin-4 based dual glp-1/glucagon receptor agonist
13c1jrjA_
26.3 73
PDB header:hormone/growth factor
Chain: A: PDB Molecule:exendin-4;
PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol
14c4uc0A_
24.7 21
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of a purine nucleoside phosphorylase (psi-nysgrc-2 029736) from agrobacterium vitis
15c2l64A_
21.9 36
PDB header:hormone
Chain: A: PDB Molecule:glucagon-like peptide 2;
PDBTitle: nmr solution structure of glp-2 in dhpc micelles
16d1ejxb_
20.4 56
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
17c4z42B_
19.7 33
PDB header:hydrolase
Chain: B: PDB Molecule:urease subunit beta;
PDBTitle: crystal structure of urease from yersinia enterocolitica
18d1p8ba_
19.6 36
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Albumin 1
19c3ox4D_
19.4 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:alcohol dehydrogenase 2;
PDBTitle: structures of iron-dependent alcohol dehydrogenase 2 from zymomonas2 mobilis zm4 complexed with nad cofactor
20c1bh0A_
19.3 55
PDB header:synthetic hormone
Chain: A: PDB Molecule:glucagon;
PDBTitle: structure of a glucagon analog
21c3bfjK_
not modelled 19.1 9
PDB header:oxidoreductase
Chain: K: PDB Molecule:1,3-propanediol oxidoreductase;
PDBTitle: crystal structure analysis of 1,3-propanediol oxidoreductase
22d4ubpb_
not modelled 18.9 44
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
23d1e9ya1
not modelled 18.2 56
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
24c3zdrA_
not modelled 18.0 5
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase domain of the bifunctional
PDBTitle: structure of the alcohol dehydrogenase (adh) domain of a2 bifunctional adhe dehydrogenase from geobacillus3 thermoglucosidasius ncimb 11955
25c2cx8B_
not modelled 17.8 17
PDB header:transferase
Chain: B: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
26d1rrma_
not modelled 17.0 9
Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
27c3bpkB_
not modelled 16.9 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase component b;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b from2 bacillus cereus
28d1ju8a_
not modelled 16.9 36
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Albumin 1
29d1vlja_
not modelled 16.7 14
Fold:Dehydroquinate synthase-like
Superfamily:Dehydroquinate synthase-like
Family:Iron-containing alcohol dehydrogenase
30c2cx8A_
not modelled 15.3 18
PDB header:transferase
Chain: A: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
31c1vliA_
not modelled 14.9 27
PDB header:biosynthetic protein
Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse;
PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution
32c5yvmA_
not modelled 14.6 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:alcohol dehydrogenase;
PDBTitle: crystal structure of the archaeal halo-thermophilic red sea brine pool2 alcohol dehydrogenase adh/d1 bound to nzq
33c2qf9B_
not modelled 14.2 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative secreted protein;
PDBTitle: crystal structure of putative secreted protein duf305 from2 streptomyces coelicolor
34c1vhyB_
not modelled 13.8 40
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein hi0303;
PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558
35d1vlia2
not modelled 13.7 27
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
36c1vhkA_
not modelled 13.4 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yqeu;
PDBTitle: crystal structure of an hypothetical protein
37c1e9zA_
not modelled 13.2 56
PDB header:hydrolase
Chain: A: PDB Molecule:urease subunit alpha;
PDBTitle: crystal structure of helicobacter pylori urease
38c5ffbA_
not modelled 12.7 10
PDB header:metal binding protein
Chain: A: PDB Molecule:copm;
PDBTitle: copm in the apo form
39c3kw2A_
not modelled 12.6 40
PDB header:transferase
Chain: A: PDB Molecule:probable r-rna methyltransferase;
PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis
40c1xuzA_
not modelled 12.5 33
PDB header:biosynthetic protein
Chain: A: PDB Molecule:polysialic acid capsule biosynthesis protein siac;
PDBTitle: crystal structure analysis of sialic acid synthase (neub)from2 neisseria meningitidis, bound to mn2+, phosphoenolpyruvate, and n-3 acetyl mannosaminitol
41c3vgxD_
not modelled 12.5 14
PDB header:membrane protein
Chain: D: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: structure of gp41 t21/cp621-652
42c6ncsB_
not modelled 12.4 37
PDB header:biosynthetic protein
Chain: B: PDB Molecule:n-acetylneuraminic acid (sialic acid) synthetase;
PDBTitle: crystal structure of n-acetylneuraminic acid (sialic acid) synthetase2 from leptospira borgpetersenii serovar hardjo-bovis in complex with3 citrate
43d1vhka2
not modelled 12.3 7
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
44c3qgaD_
not modelled 12.3 33
PDB header:hydrolase
Chain: D: PDB Molecule:fusion of urease beta and gamma subunits;
PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae
45c5o96F_
not modelled 12.2 10
PDB header:transferase
Chain: F: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: structure of the putative methyltransferase lpg2936 from legionella2 pneumophila in complex with the bound cofactor sam
46c6jkpD_
not modelled 12.1 7
PDB header:oxidoreductase
Chain: D: PDB Molecule:methanol dehydrogenase;
PDBTitle: crystal structure of sulfoacetaldehyde reductase from bifidobacterium2 kashiwanohense in complex with nad+
47c2fh0A_
not modelled 11.8 54
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical 16.0 kda protein in abf2-chl12
PDBTitle: nmr ensemble of the yeast saccharomyces cerevisiae protein2 ymr074cp core region
48c3fokH_
not modelled 11.6 19
PDB header:structural genomics, unknown function
Chain: H: PDB Molecule:uncharacterized protein cgl0159;
PDBTitle: crystal structure of cgl0159 from corynebacterium2 glutamicum (brevibacterium flavum). northeast structural3 genomics target cgr115
49c4e8bA_
not modelled 11.6 35
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s rrna methyltransferase rsme from e.coli
50c4xvvB_
not modelled 11.4 23
PDB header:chaperone
Chain: B: PDB Molecule:acid stress chaperone hdeb;
PDBTitle: crystal structure of an acid stress chaperone hdeb (kpn_03484) from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 1.70 a3 resolution
51c1z85B_
not modelled 11.1 17
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein tm1380;
PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution
52d2zdra2
not modelled 11.0 33
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:NeuB-like
53c4l69A_
not modelled 10.6 10
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: rv2372c of mycobacterium tuberculosis is rsme like methyltransferse
54d1nxza2
not modelled 10.4 8
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
55d1eija_
not modelled 10.2 38
Fold:RuvA C-terminal domain-like
Superfamily:Double-stranded DNA-binding domain
Family:Double-stranded DNA-binding domain
56c2p4fA_
not modelled 10.2 63
PDB header:chaperone
Chain: A: PDB Molecule:similar to sp
p32453 saccharomyces cerevisiae ynl315c
57c2pd2A_
not modelled 10.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein st0148;
PDBTitle: crystal structure of (st0148) conserved hypothetical from sulfolobus2 tokodaii strain7
58d1v6za2
not modelled 10.0 17
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
59c5i5iA_
not modelled 9.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrous-oxide reductase;
PDBTitle: shewanella denitrificans nitrous oxide reductase, app form
60c3bt5A_
not modelled 9.7 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein duf305;
PDBTitle: crystal structure of duf305 fragment from deinococcus radiodurans
61c2m2qA_
not modelled 9.6 60
PDB header:unknown function
Chain: A: PDB Molecule:inhibitor cystine knot peptide mch-1;
PDBTitle: solution structure of mch-1: a novel inhibitor cystine knot peptide2 from momordica charantia
62c2xuvB_
not modelled 9.3 27
PDB header:unknown function
Chain: B: PDB Molecule:hdeb;
PDBTitle: the structure of hdeb
63d1y71a1
not modelled 9.3 22
Fold:SH3-like barrel
Superfamily:Kinase-associated protein B-like
Family:Kinase-associated protein B-like
64d1vaza_
not modelled 9.0 19
Fold:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Superfamily:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Family:NSFL1 (p97 ATPase) cofactor p47, SEP domain
65d1gefa_
not modelled 8.9 33
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Hjc-like
66c3op1A_
not modelled 8.6 26
PDB header:transferase
Chain: A: PDB Molecule:macrolide-efflux protein;
PDBTitle: crystal structure of macrolide-efflux protein sp_1110 from2 streptococcus pneumoniae
67c2zbaD_
not modelled 8.4 24
PDB header:transferase
Chain: D: PDB Molecule:trichothecene 3-o-acetyltransferase;
PDBTitle: crystal structure of f. sporotrichioides tri101 complexed with2 coenzyme a and t-2
68d2fug71
not modelled 8.4 23
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Nqo15-like
69c2rbaB_
not modelled 8.3 17
PDB header:hydrolase/dna
Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase;
PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna
70c6c2uA_
not modelled 8.2 50
PDB header:de novo protein
Chain: A: PDB Molecule:phosphate-loop protein;
PDBTitle: solution structure of a phosphate-loop protein
71c1oyiA_
not modelled 8.2 21
PDB header:viral protein
Chain: A: PDB Molecule:double-stranded rna-binding protein;
PDBTitle: solution structure of the z-dna binding domain of the2 vaccinia virus gene e3l
72d1oyia_
not modelled 8.2 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
73d1to3a_
not modelled 8.1 33
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
74c6jx3B_
not modelled 7.9 12
PDB header:peptide binding protein
Chain: B: PDB Molecule:tfub1;
PDBTitle: lasso peptide synthetase b1 complexed with the leader peptide
75c2c2pA_
not modelled 7.8 23
PDB header:hydrolase
Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase;
PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans
76d1ss6a_
not modelled 7.7 19
Fold:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Superfamily:NSFL1 (p97 ATPase) cofactor p47, SEP domain
Family:NSFL1 (p97 ATPase) cofactor p47, SEP domain
77c6iqcA_
not modelled 7.7 50
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein sso0352;
PDBTitle: wild-type programmed cell death 5 protein from sulfolobus solfataricus
78d1fiua_
not modelled 7.7 20
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease NgoIV
79d2g7oa1
not modelled 7.6 15
Fold:TraM-like
Superfamily:TraM-like
Family:TraM-like
80c2jxnA_
not modelled 7.6 54
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein ymr074c;
PDBTitle: solution structure of s. cerevisiae pdcd5-like protein ymr074cp
81d2crua1
not modelled 7.4 60
Fold:RuvA C-terminal domain-like
Superfamily:Double-stranded DNA-binding domain
Family:Double-stranded DNA-binding domain
82c3okfA_
not modelled 7.4 13
PDB header:lyase
Chain: A: PDB Molecule:3-dehydroquinate synthase;
PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae
83c5vm8A_
not modelled 7.3 13
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of a ribosomal rna small subunit methyltransferase e2 from neisseria gonorrhoeae bound to s-adenosyl methionine
84d3c8ya2
not modelled 7.2 8
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
85c5us5B_
not modelled 7.2 29
PDB header:structural genomics
Chain: B: PDB Molecule:upf0297 protein ef_1202;
PDBTitle: solution structure of the ireb homodimer
86c5hstB_
not modelled 7.1 13
PDB header:lyase
Chain: B: PDB Molecule:polyketide synthase type i;
PDBTitle: crystal structure of the dehydratase domain of mlnb from bacillus2 amyloliquefaciens
87c4j3cB_
not modelled 6.8 11
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s ribosomal rna methyltransferase rsme
88d1w96a2
not modelled 6.8 13
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
89c3qi7A_
not modelled 6.7 10
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution
90c6n2fB_
not modelled 6.7 21
PDB header:lyase
Chain: B: PDB Molecule:diaminopimelate decarboxylase 2, chloroplastic;
PDBTitle: meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform2 2)
91c5cwwC_
not modelled 6.7 30
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin nup159;
PDBTitle: crystal structure of the chaetomium thermophilum heterotrimeric nup822 ntd-nup159 tail-nup145n apd complex
92c1z4hA_
not modelled 6.6 19
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
93c6hc2L_
not modelled 6.6 39
PDB header:cell cycle
Chain: L: PDB Molecule:nuclear mitotic apparatus protein 1;
PDBTitle: crystal structure of numa/lgn hetero-hexamers
94c4ejqB_
not modelled 6.6 24
PDB header:transport protein
Chain: B: PDB Molecule:kinesin-like protein kif1a;
PDBTitle: crystal structure of kif1a c-cc1-fha
95c2egwB_
not modelled 6.6 15
PDB header:rna methyltransferase
Chain: B: PDB Molecule:upf0088 protein aq_165;
PDBTitle: crystal structure of rrna methyltransferase with sah ligand
96c2navA_
not modelled 6.6 64
PDB header:toxin
Chain: A: PDB Molecule:exendin-4, alpha/kappa-conotoxin pl14a chimera;
PDBTitle: nmr solution structure of ex-4[1-16]/pl14a
97c6oawA_
not modelled 6.2 33
PDB header:immune system
Chain: A: PDB Molecule:wyl1;
PDBTitle: crystal structure of a crispr cas-related protein
98c4z85A_
not modelled 6.1 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitrobenzoate nitroreductase;
PDBTitle: crystal structur of pseudomonas fluorescens 2-nitrobenzoate 2-2 nitroreductase nbaa
99c3iwpK_
not modelled 6.0 32
PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc

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