Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1766_(-)_1999744_2000013
DateFri Aug 2 13:30:37 BST 2019
Unique Job IDa1ac11495e791a59
SequenceVIGDQDSIAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.676 Y:53.402 Z:31.437
Model (left) based on template c4m1pA_
Top template information
PDB header:transcription repressor
Chain: A: PDB Molecule:copper-sensitive operon repressor (csor);
PDBTitle: crystal structure of the copper-sensing repressor csor with cu(i) from2 geobacillus thermodenitrificans ng80-2
Confidence and coverage
Confidence:100.0% Coverage: 99%
88 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4m1pA_



100.0 28
PDB header:transcription repressor
Chain: A: PDB Molecule:copper-sensitive operon repressor (csor);
PDBTitle: crystal structure of the copper-sensing repressor csor with cu(i) from2 geobacillus thermodenitrificans ng80-2
2c5lbmD_



100.0 22
PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor frmr;
PDBTitle: the asymmetric tetrameric structure of the formaldehyde sensing2 transcriptional repressor frmr from escherichia coli
3c5fmnB_



100.0 35
PDB header:dna binding protein
Chain: B: PDB Molecule:inrs;
PDBTitle: the nickel-responsive transcriptional regulator inrs
4c5lcyD_



100.0 24
PDB header:transcription
Chain: D: PDB Molecule:frmr;
PDBTitle: formaldehyde-responsive regulator frmr e64h variant from salmonella2 enterica serovar typhimurium
5c4adzA_



99.9 29
PDB header:transcription
Chain: A: PDB Molecule:csor;
PDBTitle: crystal structure of the apo form of a copper-sensitive operon2 regulator (csor) protein from streptomyces lividans
6c2hh7A_



99.9 32
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein csor;
PDBTitle: crystal structure of cu(i) bound csor from mycobacterium tuberculosis.
7c3aaiB_



99.9 34
PDB header:transcription
Chain: B: PDB Molecule:copper homeostasis operon regulatory protein;
PDBTitle: x-ray crystal structure of csor from thermus thermophilus hb8
8c2p5tA_



36.2 38
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator peza;
PDBTitle: molecular and structural characterization of the pezat chromosomal2 toxin-antitoxin system of the human pathogen streptococcus pneumoniae
9c4aj5M_



34.0 15
PDB header:cell cycle
Chain: M: PDB Molecule:spindle and kinetochore-associated protein 2;
PDBTitle: crystal structure of the ska core complex
10c3zs9D_



31.5 33
PDB header:hydrolase/transport protein
Chain: D: PDB Molecule:golgi to er traffic protein 2;
PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment
11c5frhA_



31.4 12
PDB header:transcription
Chain: A: PDB Molecule:anti-sigma factor rsra;
PDBTitle: solution structure of oxidised rsra
12c1paqA_



29.7 15
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b epsilon
PDBTitle: crystal structure of the catalytic fragment of eukaryotic2 initiation factor 2b epsilon
13d1paqa_



29.7 15
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
14d1ivsa1



19.9 6
Fold:Long alpha-hairpin
Superfamily:tRNA-binding arm
Family:Valyl-tRNA synthetase (ValRS) C-terminal domain
15c3juiA_



19.1 15
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b subunit epsilon;
PDBTitle: crystal structure of the c-terminal domain of human translation2 initiation factor eif2b epsilon subunit
16c4u8us_



18.8 4
PDB header:oxygen storage/transport
Chain: S: PDB Molecule:globin d chain;
PDBTitle: the crystallographic structure of the giant hemoglobin from2 glossoscolex paulistus at 3.2 a resolution.
17c2nv2U_



18.5 18
PDB header:lyase/transferase
Chain: U: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus2 subtilis
18c4fc9B_



18.0 27
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the c-terminal domain of the type iii effector xcv32202 (xopl)
19c2qycA_



17.4 18
PDB header:unknown function
Chain: A: PDB Molecule:ferredoxin-like protein;
PDBTitle: crystal structure of a dimeric ferredoxin-like protein (bb1511) from2 bordetella bronchiseptica rb50 at 1.90 a resolution
20d1kkga_



14.8 27
Fold:Alpha-lytic protease prodomain-like
Superfamily:Ribosome-binding factor A, RbfA
Family:Ribosome-binding factor A, RbfA
21c4n6jA_



not modelled 14.3 21
PDB header:signaling protein
Chain: A: PDB Molecule:striatin-3;
PDBTitle: crystal structure of human striatin-3 coiled coil domain
22c4n6jB_



not modelled 13.9 21
PDB header:signaling protein
Chain: B: PDB Molecule:striatin-3;
PDBTitle: crystal structure of human striatin-3 coiled coil domain
23c5vf3Z_



not modelled 12.8 31
PDB header:virus
Chain: Z: PDB Molecule:highly immunogenic outer capsid protein;
PDBTitle: bacteriophage t4 isometric capsid
24c5an5J_



not modelled 12.6 27
PDB header:cell cycle
Chain: J: PDB Molecule:cell cycle protein gpsb;
PDBTitle: b. subtilis gpsb c-terminal domain
25c2n5xA_



not modelled 12.2 8
PDB header:chaperone
Chain: A: PDB Molecule:hsp90 co-chaperone cdc37;
PDBTitle: c-terminal domain of cdc37 cochaperone
26d1josa_



not modelled 11.9 18
Fold:Alpha-lytic protease prodomain-like
Superfamily:Ribosome-binding factor A, RbfA
Family:Ribosome-binding factor A, RbfA
27c4lh9A_



not modelled 11.5 14
PDB header:transcription
Chain: A: PDB Molecule:heterocyst differentiation control protein;
PDBTitle: crystal structure of the refolded hood domain (asp256-gly295) of hetr
28c4n5bF_



not modelled 10.3 10
PDB header:viral protein
Chain: F: PDB Molecule:phosphoprotein;
PDBTitle: crystal structure of the nipah virus phosphoprotein tetramerization2 domain
29c2gtlO_



not modelled 9.6 10
PDB header:oxygen storage/transport
Chain: O: PDB Molecule:extracellular hemoglobin linker l3 subunit;
PDBTitle: lumbricus erythrocruorin at 3.5a resolution
30d2igsa1



not modelled 9.2 27
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:PA2222-like
31c2mhwA_



not modelled 8.4 21
PDB header:antimicrobial protein, membrane protein
Chain: A: PDB Molecule:antimicrobial peptide;
PDBTitle: the solution nmr structure of maximin-4 in sds micelles
32c3femB_



not modelled 8.2 9
PDB header:biosynthetic protein, transferase
Chain: B: PDB Molecule:pyridoxine biosynthesis protein snz1;
PDBTitle: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from2 saccharomyces cerevisiae
33c6hyeF_



not modelled 8.1 18
PDB header:plant protein
Chain: F: PDB Molecule:pyridoxal 5'-phosphate synthase subunit pdx1.3;
PDBTitle: pdx1.2/pdx1.3 complex (pdx1.3:k97a)
34c2ovcA_



not modelled 8.1 10
PDB header:transport protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily kqt member 4;
PDBTitle: crystal structure of a coiled-coil tetramerization domain from kv7.42 channels
35d1q4ra_



not modelled 8.0 5
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Plant stress-induced protein
36c4p3gC_



not modelled 8.0 12
PDB header:rna binding protein
Chain: C: PDB Molecule:signal recognition particle subunit srp68;
PDBTitle: structure of the srp68-rbd from chaetomium thermophilum
37c2i9iA_



not modelled 7.4 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of helicobacter pylori protein hp0492
38d2i9ia1



not modelled 7.4 11
Fold:Anticodon-binding domain-like
Superfamily:XCC0632-like
Family:NLBH-like
39c2kzfA_



not modelled 6.9 23
PDB header:ribosomal protein
Chain: A: PDB Molecule:ribosome-binding factor a;
PDBTitle: solution nmr structure of the thermotoga maritima protein tm0855 a2 putative ribosome binding factor a
40d1tr0a_



not modelled 6.8 9
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Plant stress-induced protein
41c3cveC_



not modelled 6.8 21
PDB header:signaling protein
Chain: C: PDB Molecule:homer protein homolog 1;
PDBTitle: crystal structure of the carboxy terminus of homer1
42c5y02D_



not modelled 6.7 14
PDB header:lyase
Chain: D: PDB Molecule:hydroxynitrile lyase;
PDBTitle: c-terminal peptide depleted mutant of hydroxynitrile lyase from2 passiflora edulis (pehnl) bound with (r)-mandelonitrile
43c1cffB_



not modelled 6.6 40
PDB header:calmodulin
Chain: B: PDB Molecule:calcium pump;
PDBTitle: nmr solution structure of a complex of calmodulin with a binding2 peptide of the ca2+-pump
44c6hxgE_



not modelled 6.3 18
PDB header:plant protein
Chain: E: PDB Molecule:pyridoxal 5'-phosphate synthase-like subunit pdx1.2;
PDBTitle: pdx1.2/pdx1.3 complex (intermediate)
45c3ibwA_



not modelled 6.1 26
PDB header:transferase
Chain: A: PDB Molecule:gtp pyrophosphokinase;
PDBTitle: crystal structure of the act domain from gtp pyrophosphokinase of2 chlorobium tepidum. northeast structural genomics consortium target3 ctr148a
46c4yioB_



not modelled 6.1 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:superoxide dismutase;
PDBTitle: x-ray structure of the iron/manganese cambialistic superoxide2 dismutase from streptococcus thermophilus
47c3vdoB_



not modelled 6.1 6
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
48d1tiza_



not modelled 6.0 9
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
49c5b0aA_



not modelled 5.9 0
PDB header:lyase
Chain: A: PDB Molecule:olivetolic acid cyclase;
PDBTitle: polyketide cyclase oac from cannabis sativa, h5q mutant
50c3rkgA_



not modelled 5.7 4
PDB header:metal transport
Chain: A: PDB Molecule:magnesium transporter mrs2, mitochondrial;
PDBTitle: structural and functional characterization of the yeast mg2+ channel2 mrs2
51c6bp6A_



not modelled 5.5 30
PDB header:endocytosis
Chain: A: PDB Molecule:comm domain-containing protein 9;
PDBTitle: crystal structure of commd9 comm domain
52c3nepX_



not modelled 5.5 17
PDB header:oxidoreductase
Chain: X: PDB Molecule:malate dehydrogenase;
PDBTitle: 1.55a resolution structure of malate dehydrogenase from salinibacter2 ruber
53d1pa4a_



not modelled 5.3 17
Fold:Alpha-lytic protease prodomain-like
Superfamily:Ribosome-binding factor A, RbfA
Family:Ribosome-binding factor A, RbfA
54d1gtda_



not modelled 5.3 17
Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
55d1j2jb_



not modelled 5.3 16
Fold:Spectrin repeat-like
Superfamily:GAT-like domain
Family:GAT domain
56c2xa0C_



not modelled 5.3 26
PDB header:apoptosis
Chain: C: PDB Molecule:apoptosis regulator bax;
PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide
57c4oe8C_



not modelled 5.1 19
PDB header:immune system
Chain: C: PDB Molecule:alphabody ma12;
PDBTitle: interleukin-23 complex with an antagonistic alphabody, crystal form 1

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