Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1767_(-)_2000081_2000440
DateFri Aug 2 13:30:37 BST 2019
Unique Job ID2bbe2a88176144c3
SequenceMSDQPRHHQV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.624 Y:39.565 Z:36.233
Model (left) based on template c5dipB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
Confidence and coverage
Confidence: 99.9% Coverage: 92%
110 residues ( 92% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5dipB_



99.9 37
PDB header:oxidoreductase
Chain: B: PDB Molecule:alkyl hydroperoxide reductase ahpd;
PDBTitle: crystal structure of lpg0406 in reduced form from legionella2 pneumophila
2c1p8cD_



99.9 25
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of tm1620 (apc4843) from thermotoga2 maritima
3c2qeuA_



99.9 23
PDB header:lyase
Chain: A: PDB Molecule:putative carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of putative carboxymuconolactone decarboxylase2 (yp_555818.1) from burkholderia xenovorans lb400 at 1.65 a resolution
4d1vkea_



99.9 25
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
5c3d7iB_



99.9 22
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family protein;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase family protein2 possibly involved in oxygen detoxification (1591455) from3 methanococcus jannaschii at 1.75 a resolution
6d2cwqa1



99.9 22
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
7d1vkeb_



99.9 31
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
8c3beyC_



99.8 30
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:conserved protein o27018;
PDBTitle: crystal structure of the protein o27018 from methanobacterium2 thermoautotrophicum. northeast structural genomics consortium target3 tt217
9d2q0ta1



99.8 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
10d2af7a1



99.8 23
Fold:AhpD-like
Superfamily:AhpD-like
Family:CMD-like
11d2ouwa1



99.8 25
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
12c4g9qA_



99.7 18
PDB header:lyase
Chain: A: PDB Molecule:4-carboxymuconolactone decarboxylase;
PDBTitle: crystal structure of a 4-carboxymuconolactone decarboxylase
13d1knca_



99.7 17
Fold:AhpD-like
Superfamily:AhpD-like
Family:AhpD
14c6ohiA_



99.5 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:debrominase bmp8;
PDBTitle: crystal structure of the debrominase bmp8 (apo)
15d2pfxa1



99.4 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
16c3lvyB_



99.3 24
PDB header:lyase
Chain: B: PDB Molecule:carboxymuconolactone decarboxylase family;
PDBTitle: crystal structure of carboxymuconolactone decarboxylase2 family protein smu.961 from streptococcus mutans
17c3c1lB_



99.3 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative antioxidant defense protein mlr4105;
PDBTitle: crystal structure of an antioxidant defense protein (mlr4105) from2 mesorhizobium loti maff303099 at 2.00 a resolution
18d2prra1



99.3 19
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
19d2gmya1



99.2 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
20d2oyoa1



99.2 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
21d2o4da1



not modelled 99.2 32
Fold:AhpD-like
Superfamily:AhpD-like
Family:Atu0492-like
22c5dj4D_



not modelled 98.5 20
PDB header:signaling protein
Chain: D: PDB Molecule:sestrin-2;
PDBTitle: leucine-bound sestrin2 from homo sapiens
23c5gzxD_



not modelled 98.2 20
PDB header:hydrolase
Chain: D: PDB Molecule:(r)-2-haloacid dehalogenase;
PDBTitle: the complex structure of d-2-haloacid dehalogenase mutant with d-2-cpa
24d1otva_



not modelled 34.5 10
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:PqqC-like
25d2p7vb1



not modelled 28.5 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
26c5l87A_



not modelled 27.7 24
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
27c3ff5B_



not modelled 27.5 22
PDB header:protein transport
Chain: B: PDB Molecule:peroxisomal biogenesis factor 14;
PDBTitle: crystal structure of the conserved n-terminal domain of the2 peroxisomal matrix-protein-import receptor, pex14p
28c1x3wB_



not modelled 25.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:uv excision repair protein rad23;
PDBTitle: structure of a peptide:n-glycanase-rad23 complex
29c5aonB_



not modelled 25.0 26
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
30c3bjxB_



not modelled 23.5 22
PDB header:hydrolase
Chain: B: PDB Molecule:halocarboxylic acid dehalogenase dehi;
PDBTitle: structure of a group i haloacid dehalogenase from2 pseudomonas putida strain pp3
31c2iosA_



not modelled 19.5 10
PDB header:antitumor protein
Chain: A: PDB Molecule:programmed cell death 4, pdcd4;
PDBTitle: crystal structure of the c-terminal ma3 domain of pdcd42 (mouse); form 3
32d2itba1



not modelled 19.0 18
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:MiaE-like
33d1p4wa_



not modelled 18.2 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
34c4wv4A_



not modelled 17.9 16
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 10;
PDBTitle: heterodimer of taf8/taf10
35c2k9lA_



not modelled 17.9 13
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
36c2w85A_



not modelled 17.6 20
PDB header:protein transport
Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14;
PDBTitle: structure of pex14 in complex with pex19
37c2hl7A_



not modelled 17.6 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
38c5tthA_



not modelled 16.0 19
PDB header:chaperone
Chain: A: PDB Molecule:c-terminal spycatcher fusion of wildtype zebrafish tnf
PDBTitle: heterodimeric spycatcher/spytag-fused zebrafish trap1 in atp/adp-2 hybrid state
39c5tmxA_



not modelled 15.8 15
PDB header:transcription regulator
Chain: A: PDB Molecule:protein sini;
PDBTitle: solution structure of sini, antagonist to the master biofilm-regulator2 sinr in bacillus subtilis
40d1tueb_



not modelled 15.5 9
Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
41c5mqfT_



not modelled 14.8 18
PDB header:splicing
Chain: T: PDB Molecule:pre-mrna-splicing factor cwc22 homolog;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
42d1x9na1



not modelled 14.8 15
Fold:ATP-dependent DNA ligase DNA-binding domain
Superfamily:ATP-dependent DNA ligase DNA-binding domain
Family:ATP-dependent DNA ligase DNA-binding domain
43c1qaxA_



not modelled 14.4 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (3-hydroxy-3-methylglutaryl-coenzyme a reductase);
PDBTitle: ternary complex of pseudomonas mevalonii hmg-coa reductase with hmg-2 coa and nad+
44c2k9mA_



not modelled 14.2 13
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: structure of the core binding domain of sigma54
45c2qsfX_



not modelled 13.4 12
PDB header:dna binding protein
Chain: X: PDB Molecule:uv excision repair protein rad23;
PDBTitle: crystal structure of the rad4-rad23 complex
46c2kw0A_



not modelled 13.4 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
47c1t3qD_



not modelled 12.4 24
PDB header:oxidoreductase
Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
48c4j0bB_



not modelled 12.3 19
PDB header:chaperone
Chain: B: PDB Molecule:tnf receptor-associated protein 1;
PDBTitle: structure of mitochondrial hsp90 (trap1) with adp-bef3
49c5y6qA_



not modelled 12.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidase small subunit;
PDBTitle: crystal structure of an aldehyde oxidase from methylobacillus sp.2 ky4400
50c4c9bB_



not modelled 12.0 13
PDB header:splicing
Chain: B: PDB Molecule:pre-mrna-splicing factor cwc22 homolog;
PDBTitle: crystal structure of eif4aiii-cwc22 complex
51c4zohC_



not modelled 11.9 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative oxidoreductase iron-sulfur subunit;
PDBTitle: crystal structure of glyceraldehyde oxidoreductase
52c6et8B_



not modelled 11.8 17
PDB header:protein binding
Chain: B: PDB Molecule:albicidin resistance protein;
PDBTitle: crystal structure of alba in complex with albicidin
53c4r33A_



not modelled 11.8 16
PDB header:lyase
Chain: A: PDB Molecule:nosl;
PDBTitle: x-ray structure of the tryptophan lyase nosl with tryptophan and s-2 adenosyl-l-homocysteine bound
54c5lj3H_



not modelled 11.6 14
PDB header:splicing
Chain: H: PDB Molecule:cwc22;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
55c3t72o_



not modelled 11.2 7
PDB header:transcription/dna
Chain: O: PDB Molecule:pho box dna (strand 1);
PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex
56d2nnua1



not modelled 11.1 7
Fold:E2 regulatory, transactivation domain
Superfamily:E2 regulatory, transactivation domain
Family:E2 regulatory, transactivation domain
57c3ol4B_



not modelled 10.9 15
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
58d1su3a1



not modelled 10.9 7
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
59d1khda1



not modelled 10.6 13
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
60c3df0C_



not modelled 10.5 15
PDB header:hydrolase
Chain: C: PDB Molecule:calpastatin;
PDBTitle: calcium-dependent complex between m-calpain and calpastatin
61c1ffuA_



not modelled 10.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
62c2dvwB_



not modelled 10.2 12
PDB header:cell cycle/protein-binding
Chain: B: PDB Molecule:26s protease regulatory subunit 6b;
PDBTitle: structure of the oncoprotein gankyrin in complex with s62 atpase of the 26s proteasome
63d2f05a1



not modelled 10.0 8
Fold:PAH2 domain
Superfamily:PAH2 domain
Family:PAH2 domain
64d1dxsa_



not modelled 9.9 13
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
65c2q0oA_



not modelled 9.8 22
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
66c3cixA_



not modelled 9.6 17
PDB header:adomet binding protein
Chain: A: PDB Molecule:fefe-hydrogenase maturase;
PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate
67c1yhlA_



not modelled 9.6 17
PDB header:transferase
Chain: A: PDB Molecule:farnesyl pyrophosphate synthase;
PDBTitle: structure of the complex of trypanosoma cruzi farnesyl diphosphate2 synthase with risedronate, dmapp and mg+2
68d1a9xa1



not modelled 9.5 28
Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
69c4ipeA_



not modelled 9.5 19
PDB header:chaperone
Chain: A: PDB Molecule:tnf receptor-associated protein 1;
PDBTitle: crystal structure of mitochondrial hsp90 (trap1) with amppnp
70c4wcxC_



not modelled 9.1 20
PDB header:lyase
Chain: C: PDB Molecule:biotin and thiamin synthesis associated;
PDBTitle: crystal structure of hydg: a maturase of the [fefe]-hydrogenase
71d1rcwa_



not modelled 9.1 15
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:PqqC-like
72d1s5qb_



not modelled 8.7 12
Fold:PAH2 domain
Superfamily:PAH2 domain
Family:PAH2 domain
73d1uoua1



not modelled 8.7 13
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
74c2ekkA_



not modelled 8.3 30
PDB header:protein binding
Chain: A: PDB Molecule:uba domain from e3 ubiquitin-protein ligase
PDBTitle: solution structure of ruh-074, a human uba domain
75c4dt1A_



not modelled 8.2 25
PDB header:dna binding protein
Chain: A: PDB Molecule:chromosome segregation in meiosis protein 2;
PDBTitle: crystal structure of the psy3-csm2 complex
76c4onsC_



not modelled 8.0 16
PDB header:cell adhesion
Chain: C: PDB Molecule:catenin alpha-2;
PDBTitle: structural and thermodynamic characterization of cadherin-beta-2 catenin-alpha-catenin complex formation
77d1ku3a_



not modelled 7.9 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors
Family:Sigma4 domain
78c2diiA_



not modelled 7.7 15
PDB header:transcription
Chain: A: PDB Molecule:tfiih basal transcription factor complex p62
PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit
79c3h20A_



not modelled 7.7 17
PDB header:replication
Chain: A: PDB Molecule:replication protein b;
PDBTitle: crystal structure of primase repb'
80d1v97a1



not modelled 7.6 17
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
81c6fkgC_



not modelled 7.6 25
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
82d3bula1



not modelled 7.5 14
Fold:Methionine synthase domain-like
Superfamily:Methionine synthase domain
Family:Methionine synthase domain
83d1slma1



not modelled 7.2 16
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
84d1dgja1



not modelled 7.2 11
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
85c4oogA_



not modelled 7.2 11
PDB header:hydrolase/rna
Chain: A: PDB Molecule:ribonuclease 3;
PDBTitle: crystal structure of yeast rnase iii (rnt1p) complexed with the2 product of dsrna processing
86c2k53A_



not modelled 7.0 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:a3dk08 protein;
PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9
87c5ux1D_



not modelled 6.9 9
PDB header:lyase
Chain: D: PDB Molecule:trna-(ms(2)io(6)a)-hydroxylase-like;
PDBTitle: protein 43 with aldehyde deformylating oxygenase activity from2 synechococcus
88c5xf9G_



not modelled 6.9 14
PDB header:oxidoreductase
Chain: G: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
89c4xlgB_



not modelled 6.8 17
PDB header:hydrolase
Chain: B: PDB Molecule:structure-specific endonuclease subunit slx4;
PDBTitle: c. glabrata slx1 in complex with slx4ccd.
90c2llwA_



not modelled 6.8 17
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein sti1;
PDBTitle: solution structure of the yeast sti1 dp2 domain
91c4lqxB_



not modelled 6.6 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:tena/thi-4 domain-containing protein;
PDBTitle: crystal structure of a tena/thi-4 domain-containing protein (sso2700)2 from sulfolobus solfataricus p2 at 2.34 a resolution
92d1qaxa2



not modelled 6.6 31
Fold:Substrate-binding domain of HMG-CoA reductase
Superfamily:Substrate-binding domain of HMG-CoA reductase
Family:Substrate-binding domain of HMG-CoA reductase
93d1jroa1



not modelled 6.5 13
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
94c2kztA_



not modelled 6.4 23
PDB header:apoptosis
Chain: A: PDB Molecule:programmed cell death protein 4;
PDBTitle: structure of the tandem ma-3 region of pdcd4
95c2qsgX_



not modelled 6.4 24
PDB header:dna binding protein/dna
Chain: X: PDB Molecule:uv excision repair protein rad23;
PDBTitle: crystal structure of rad4-rad23 bound to a uv-damaged dna
96c5odiE_



not modelled 6.3 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:methyl-viologen reducing hydrogenase, subunit g;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus cocrystallized with com-sh
97c5ui5I_



not modelled 6.2 13
PDB header:transcription/dna
Chain: I: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: crystal structure of aquifex aeolicus sigman bound to promoter dna
98d1yt3a2



not modelled 6.2 9
Fold:SAM domain-like
Superfamily:HRDC-like
Family:RNase D C-terminal domains
99c3c19A_



not modelled 6.1 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mk0293;
PDBTitle: crystal structure of protein mk0293 from methanopyrus kandleri av19

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