Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1768_(PE_PGRS31)_2000621_2002477
DateFri Aug 2 13:30:37 BST 2019
Unique Job IDd6abcd9c760e8639
SequenceMSYLVVVPEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.590 Y:35.740 Z:53.173
Model (left) based on template c5xfsA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence: 99.8% Coverage: 13%
78 residues ( 13% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
559 residues ( 90%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 88% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsA_
99.8 51
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38A_
99.8 34
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38a1
99.8 34
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PE
4c1ygvA_
99.7 23
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment
5c1y0fB_
99.4 28
PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule
6c3hqvB_
99.0 25
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement
7c3bogB_
96.0 38
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate
8c3bogA_
96.0 38
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate
9c2pneA_
95.9 39
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein
10c3boiA_
95.9 39
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate
11c3boiB_
95.9 39
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate
12c2ml3A_
92.7 19
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r3 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase
13c1k7qA_
88.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant
14c5ctdB_
87.4 29
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain,collagen alpha-2(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen
15c5ctiC_
85.8 28
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-3(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen (native form)
16c5ctdA_
85.8 29
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-1(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen
17c2ml2A_
85.8 20
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r2 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase
18c2qubG_
84.7 16
PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens
19d1k7ia1
84.7 18
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
20c2agmA_
84.1 18
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4
21c1nayC_
not modelled 83.5 25
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: gpp-foldon:x-ray structure
22d1kapp1
not modelled 82.2 19
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
23c2zj6A_
not modelled 82.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase
24c1jiwP_
not modelled 78.7 19
PDB header:hydrolase/hyrolase inhibitor
Chain: P: PDB Molecule:alkaline metalloproteinase;
PDBTitle: crystal structure of the apr-aprin complex
25c1satA_
not modelled 73.2 23
PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:serratia protease;
PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens
26c1om8A_
not modelled 71.3 23
PDB header:hydrolase
Chain: A: PDB Molecule:serralysin;
PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta
27c5cxlA_
not modelled 56.4 25
PDB header:toxin
Chain: A: PDB Molecule:bifunctional hemolysin/adenylate cyclase;
PDBTitle: crystal structure of rtx domain block v of adenylate cyclase toxin2 from bordetella pertussis
28d1g9ka1
not modelled 17.8 16
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
29d1sata1
not modelled 11.0 16
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
30c3p4gD_
not modelled 8.4 21
PDB header:antifreeze protein
Chain: D: PDB Molecule:antifreeze protein;
PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium
31c6irwA_
not modelled 8.4 40
PDB header:transferase
Chain: A: PDB Molecule:phosphorylated ctd-interacting factor 1;
PDBTitle: crystal structure of the human cap-specific adenosine2 methyltransferase bound to sah

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite