Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1778c_(-)_2012088_2012537
DateFri Aug 2 13:30:38 BST 2019
Unique Job IDbbafefabae854fb7
SequenceMRVSLFLSDA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.762 Y:29.538 Z:36.673
Model (left) based on template d1z0na1
Top template information
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
Confidence and coverage
Confidence: 77.1% Coverage: 40%
59 residues ( 40% of your sequence) have been modelled with 77.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1z0na1
77.1 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
2d2f15a1
76.1 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
3d1z0mb1
75.6 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
4c4cffB_
72.3 16
PDB header:transferase
Chain: B: PDB Molecule:5'-amp-activated protein kinase subunit beta-1;
PDBTitle: structure of full length human ampk in complex with a small molecule2 activator, a thienopyridone derivative (a-769662)
5d2qlvb1
70.9 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:AMPK-beta glycogen binding domain-like
6c1jsuC_
68.9 42
PDB header:complex (transferase/cyclin/inhibitor)
Chain: C: PDB Molecule:p27;
PDBTitle: p27(kip1)/cyclin a/cdk2 complex
7c3a0oB_
66.4 16
PDB header:lyase
Chain: B: PDB Molecule:oligo alginate lyase;
PDBTitle: crystal structure of alginate lyase from agrobacterium tumefaciens c58
8c2qlvB_
65.7 18
PDB header:transferase/protein binding
Chain: B: PDB Molecule:protein sip2;
PDBTitle: crystal structure of the heterotrimer core of the s. cerevisiae ampk2 homolog snf1
9d1m1jb1
63.5 22
Fold:Fibrinogen C-terminal domain-like
Superfamily:Fibrinogen C-terminal domain-like
Family:Fibrinogen C-terminal domain-like
10c1ei3E_
62.4 24
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
11c4m7fB_
62.0 24
PDB header:sugar binding protein
Chain: B: PDB Molecule:fibrinogen c domain-containing protein 1;
PDBTitle: crystal structure of tetrameric fibrinogen-like recognition domain of2 fibcd1 with bound mannac
12c1jc9A_
61.7 17
PDB header:sugar binding protein
Chain: A: PDB Molecule:techylectin-5a;
PDBTitle: tachylectin 5a from tachypleus tridentatus (japanese horseshoe crab)
13d1jc9a_
61.7 17
Fold:Fibrinogen C-terminal domain-like
Superfamily:Fibrinogen C-terminal domain-like
Family:Fibrinogen C-terminal domain-like
14c4epuB_
61.4 29
PDB header:signaling protein
Chain: B: PDB Molecule:angiopoietin-1;
PDBTitle: ang1 fibrinogen-related domain (fred)
15c3nmeA_
59.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:sex4 glucan phosphatase;
PDBTitle: structure of a plant phosphatase
16c3ghgI_
59.0 27
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
17c6euaA_
58.6 18
PDB header:signaling protein
Chain: A: PDB Molecule:angiopoietin-related protein 3;
PDBTitle: the fibrinogen-like domain of human angptl3
18c5kpeA_
55.2 24
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664
19c2j61B_
54.8 22
PDB header:lectin
Chain: B: PDB Molecule:ficolin-2;
PDBTitle: l-ficolin complexed to n-acetylglucosamine (forme c)
20c1deqO_
52.6 24
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
21c2hpcF_
not modelled 51.6 24
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen, gamma polypeptide;
PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide.
22d2npta1
not modelled 43.9 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
23c3vn3B_
not modelled 38.1 32
PDB header:antifreeze protein
Chain: B: PDB Molecule:antifreeze protein;
PDBTitle: fungal antifreeze protein exerts hyperactivity by constructing an2 inequable beta-helix
24c4nu3A_
not modelled 35.3 28
PDB header:antifreeze protein
Chain: A: PDB Molecule:ice-binding protein;
PDBTitle: crystal structure of mffibp, a capping head region swapped mutant of2 ice-binding protein
25c2w87B_
not modelled 34.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:esterase d;
PDBTitle: xyl-cbm35 in complex with glucuronic acid containing2 disaccharide.
26c6gszA_
not modelled 32.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-l-rhamnosidase;
PDBTitle: crystal structure of native alfa-l-rhamnosidase from aspergillus2 terreus
27c2yrlA_
not modelled 32.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa1837 protein;
PDBTitle: solution structure of the pkd domain from kiaa 1837 protein
28c6i60B_
not modelled 30.6 31
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-rhamnosidase;
PDBTitle: structure of alpha-l-rhamnosidase from dictyoglumus thermophilum
29c5n1tM_
not modelled 29.6 14
PDB header:oxidoreductase
Chain: M: PDB Molecule:copc;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
30d1tfpa_
not modelled 29.5 16
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
31c4ic7B_
not modelled 28.4 24
PDB header:transferase
Chain: B: PDB Molecule:dual specificity mitogen-activated protein kinase kinase 5;
PDBTitle: crystal structure of the erk5 kinase domain in complex with an mkk52 binding fragment
32c2di7A_
not modelled 25.8 9
PDB header:structural protein
Chain: A: PDB Molecule:bk158_1;
PDBTitle: solution structure of the filamin domain from human bk158_12 protein
33c2qz5A_
not modelled 24.7 14
PDB header:signaling protein, lipid binding protein
Chain: A: PDB Molecule:axin interactor, dorsalization associated
PDBTitle: crystal structure of the c-terminal domain of aida
34c6imfB_
not modelled 24.5 19
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:small serum protein 2;
PDBTitle: crystal structure of toxin/antitoxin complex
35c3t69A_
not modelled 22.6 17
PDB header:transferase
Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase;
PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti
36c3wp9A_
not modelled 22.2 36
PDB header:antifreeze protein
Chain: A: PDB Molecule:ice-binding protein;
PDBTitle: crystal structure of antifreeze protein from an antarctic sea ice2 bacterium colwellia sp.
37c3hh1D_
not modelled 22.0 17
PDB header:transferase
Chain: D: PDB Molecule:tetrapyrrole methylase family protein;
PDBTitle: the structure of a tetrapyrrole methylase family protein domain from2 chlorobium tepidum tls
38d2fyta1
not modelled 21.4 9
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Arginine methyltransferase
39c4jdeB_
not modelled 21.3 53
PDB header:unknown function
Chain: B: PDB Molecule:protein f15e11.1;
PDBTitle: crystal structure of pud-1/pud-2 heterodimer
40c1o7dA_
not modelled 20.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
41d1wi0a_
not modelled 20.6 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
42c4c3iA_
not modelled 20.5 17
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa190;
PDBTitle: structure of 14-subunit rna polymerase i at 3.0 a resolution, crystal2 form c2-100
43c5lmxA_
not modelled 20.5 17
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa190;
PDBTitle: monomeric rna polymerase i at 4.9 a resolution
44d1ci3m2
not modelled 20.1 25
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:Cytochrome f, small domain
45c3osvC_
not modelled 20.0 14
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
46c3w5mA_
not modelled 19.0 34
PDB header:hydrolase
Chain: A: PDB Molecule:putative rhamnosidase;
PDBTitle: crystal structure of streptomyces avermitilis alpha-l-rhamnosidase
47c2ymaB_
not modelled 18.9 40
PDB header:carbohydrate binding protein
Chain: B: PDB Molecule:protein os-9 homolog;
PDBTitle: x-ray structure of the yos9 dimerization domain
48d3bvua3
not modelled 18.6 19
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:alpha-mannosidase
49c5m3fA_
not modelled 18.5 17
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase i subunit rpa190;
PDBTitle: yeast rna polymerase i elongation complex at 3.8a
50d1jmxa5
not modelled 17.7 28
Fold:Streptavidin-like
Superfamily:Quinohemoprotein amine dehydrogenase A chain, domain 3
Family:Quinohemoprotein amine dehydrogenase A chain, domain 3
51d1cwva2
not modelled 17.7 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Invasin/intimin cell-adhesion fragments
Family:Invasin/intimin cell-adhesion fragments
52c3obaA_
not modelled 17.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: structure of the beta-galactosidase from kluyveromyces lactis
53c2kxrA_
not modelled 17.1 19
PDB header:protein binding
Chain: A: PDB Molecule:tight junction protein zo-1;
PDBTitle: zo1 zu5 domain mc/aa mutation
54d1uena_
not modelled 17.0 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
55d1jz8a1
not modelled 17.0 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
56c6gcsC_
not modelled 16.9 23
PDB header:oxidoreductase
Chain: C: PDB Molecule:49-kda protein (nucm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
57c3j9qc_
not modelled 16.9 13
PDB header:structural protein
Chain: C: PDB Molecule:sheath;
PDBTitle: atomic structures of a bactericidal contractile nanotube in its pre-2 and post-contraction states
58c2ow7A_
not modelled 16.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase 2;
PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride
59c2x5pA_
not modelled 16.2 27
PDB header:protein binding
Chain: A: PDB Molecule:fibronectin binding protein;
PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b
60c2iz4A_
not modelled 16.2 33
PDB header:inhibitor
Chain: A: PDB Molecule:beta-microseminoprotein;
PDBTitle: solution structure of human and porcine beta-2 microseminoprotein
61c3uyuA_
not modelled 16.1 40
PDB header:antifreeze protein
Chain: A: PDB Molecule:antifreeze protein;
PDBTitle: structural basis for the antifreeze activity of an ice-binding protein2 (leibp) from arctic yeast
62c4lg3B_
not modelled 16.1 30
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf487 family protein (despig_00776) from2 desulfovibrio piger atcc 29098 at 2.49 a resolution
63d2vzsa3
not modelled 15.8 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
64c2zp2B_
not modelled 15.3 15
PDB header:transferase inhibitor
Chain: B: PDB Molecule:kinase a inhibitor;
PDBTitle: c-terminal domain of kipi from bacillus subtilis
65c3pe9D_
not modelled 15.2 13
PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
66d1zdxa1
not modelled 14.7 23
Fold:FimD N-terminal domain-like
Superfamily:FimD N-terminal domain-like
Family:Usher N-domain
67c3g5bA_
not modelled 14.4 20
PDB header:apoptosis
Chain: A: PDB Molecule:netrin receptor unc5b;
PDBTitle: the structure of unc5b cytoplasmic domain
68d1kula_
not modelled 14.4 9
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
69c3pe9B_
not modelled 14.3 13
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
70d1kgia_
not modelled 14.0 16
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
71d1ttaa_
not modelled 13.9 19
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
72c4e9lA_
not modelled 13.8 12
PDB header:cell adhesion
Chain: A: PDB Molecule:attaching and effacing protein, pathogenesis factor;
PDBTitle: fdec, a novel broadly conserved escherichia coli adhesin eliciting2 protection against urinary tract infections
73c2qbuA_
not modelled 13.6 40
PDB header:transferase
Chain: A: PDB Molecule:precorrin-2 methyltransferase;
PDBTitle: crystal structure of methanothermobacter thermautotrophicus cbil
74c2rpsA_
not modelled 13.5 15
PDB header:immune system
Chain: A: PDB Molecule:chemokine;
PDBTitle: solution structure of a novel insect chemokine isolated from2 integument
75d1pbya5
not modelled 13.5 38
Fold:Streptavidin-like
Superfamily:Quinohemoprotein amine dehydrogenase A chain, domain 3
Family:Quinohemoprotein amine dehydrogenase A chain, domain 3
76c6eioA_
not modelled 13.3 26
PDB header:antifreeze protein
Chain: A: PDB Molecule:antifreeze protein;
PDBTitle: crystal structure of an ice binding protein from an antarctic2 biological consortium
77c2phcB_
not modelled 13.3 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ph0987;
PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii
78c2h1xB_
not modelled 13.2 28
PDB header:hydrolase
Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as
PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein)
79c5fjaA_
not modelled 13.1 23
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase iii subunit rpc1;
PDBTitle: cryo-em structure of yeast rna polymerase iii at 4.7 a
80c3qvaB_
not modelled 13.1 20
PDB header:hydrolase
Chain: B: PDB Molecule:transthyretin-like protein;
PDBTitle: structure of klebsiella pneumoniae 5-hydroxyisourate hydrolase
81c5dudB_
not modelled 12.7 15
PDB header:unknown function
Chain: B: PDB Molecule:ybgj;
PDBTitle: crystal structure of e. coli ybgjk
82c3isyA_
not modelled 12.7 14
PDB header:protein binding
Chain: A: PDB Molecule:intracellular proteinase inhibitor;
PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution
83c3o27B_
not modelled 12.6 21
PDB header:dna binding protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx
84d1oo2a_
not modelled 12.4 16
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
85c2e0kA_
not modelled 12.3 30
PDB header:transferase
Chain: A: PDB Molecule:precorrin-2 c20-methyltransferase;
PDBTitle: crystal structure of cbil, a methyltransferase involved in anaerobic2 vitamin b12 biosynthesis
86d1fzda_
not modelled 12.0 17
Fold:Fibrinogen C-terminal domain-like
Superfamily:Fibrinogen C-terminal domain-like
Family:Fibrinogen C-terminal domain-like
87c4qt6A_
not modelled 12.0 18
PDB header:transport protein
Chain: A: PDB Molecule:probable e3 ubiquitin-protein ligase herc1;
PDBTitle: crystal structure of the spry domain of human herc1
88c3kwpA_
not modelled 11.9 11
PDB header:transferase
Chain: A: PDB Molecule:predicted methyltransferase;
PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis
89d1f86a_
not modelled 11.9 24
Fold:Prealbumin-like
Superfamily:Transthyretin (synonym: prealbumin)
Family:Transthyretin (synonym: prealbumin)
90c3mv14_
not modelled 11.8 21
PDB header:hydrolase
Chain: 4: PDB Molecule:beta-galactosidase;
PDBTitle: e.coli (lacz) beta-galactosidase (r599a) in complex with guanidinium
91c4qiwA_
not modelled 11.7 21
PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
92c1jz6C_
not modelled 11.5 21
PDB header:hydrolase
Chain: C: PDB Molecule:beta-galactosidase;
PDBTitle: e. coli (lacz) beta-galactosidase in complex with galacto-2 tetrazole
93c1htyA_
not modelled 11.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase ii;
PDBTitle: golgi alpha-mannosidase ii
94c2vz1A_
not modelled 11.2 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:galactose oxidase;
PDBTitle: premat-galactose oxidase
95c4puxA_
not modelled 11.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a beta-barrel like protein (abaye2633) from2 acinetobacter baumannii aye at 1.43 a resolution
96d2phcb1
not modelled 10.8 23
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:PH0987 C-terminal domain-like
97c2lieA_
not modelled 10.7 31
PDB header:sugar binding protein
Chain: A: PDB Molecule:ccl2 lectin;
PDBTitle: nmr structure of the lectin ccl2
98c5x5sA_
not modelled 10.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: ligand induced structure of amyp-sbd
99c2iz3A_
not modelled 10.5 27
PDB header:inhibitor
Chain: A: PDB Molecule:beta-microseminoprotein;
PDBTitle: solution structure of human and porcine beta-2 microseminoprotein

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