Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1779c_(-)_2012693_2014486
DateFri Aug 2 13:30:38 BST 2019
Unique Job ID1916e0980f571890
SequenceMCAHEYAEQR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.350 Y:24.335 Z:25.089
Model (left) based on template c5voxb_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase in complex with legionella pneumophila effector sidk2 (rotational state 1)
Confidence and coverage
Confidence: 74.4% Coverage: 9%
52 residues ( 9% of your sequence) have been modelled with 74.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5voxb_
74.4 8
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase in complex with legionella pneumophila effector sidk2 (rotational state 1)
2c6o7ua_
73.8 15
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
3c4cdiC_
64.3 28
PDB header:membrane protein
Chain: C: PDB Molecule:predicted protein;
PDBTitle: crystal structure of acrb-acrz complex
4c6o7xa_
63.8 15
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
5c5gasN_
56.8 25
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
6c2kncA_
48.3 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
7c6cfwB_
46.7 23
PDB header:membrane protein
Chain: B: PDB Molecule:monovalent cation/h+ antiporter subunit f;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
8c5ew5C_
36.8 19
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
9c5kc1H_
35.8 12
PDB header:endocytosis
Chain: H: PDB Molecule:autophagy-related protein 38;
PDBTitle: structure of the c-terminal dimerization domain of atg38
10c2mx4A_
30.1 21
PDB header:translation,protein binding
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4e-binding protein
PDBTitle: nmr structure of phosphorylated 4e-bp2
11c5nbtC_
28.1 19
PDB header:hydrolase
Chain: C: PDB Molecule:katanin p80 wd40 repeat-containing subunit b1;
PDBTitle: apo structure of p60n/p80c katanin
12c4rfsS_
27.0 14
PDB header:hydrolase, transport protein
Chain: S: PDB Molecule:substrate binding pritein s;
PDBTitle: structure of a pantothenate energy coupling factor transporter
13c2l8sA_
24.7 21
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
14c6hu9e_
24.4 21
PDB header:oxidoreductase/electron transport
Chain: E: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
15c2lqtA_
21.8 33
PDB header:unknown function
Chain: A: PDB Molecule:coiled-coil-helix-coiled-coil-helix domain-containing
PDBTitle: solution structure of chchd7
16c1ciiA_
21.2 8
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
17d2fmla1
20.7 41
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Nudix-associated domain
18c4rnbA_
19.9 11
PDB header:signaling protein
Chain: A: PDB Molecule:orexin receptor type 2, glga glycogen synthase;
PDBTitle: crystal structure of the human ox2 orexin receptor bound to the2 insomnia drug suvorexant
19c6f2dJ_
19.6 18
PDB header:protein transport
Chain: J: PDB Molecule:flagellar biosynthetic protein fliq;
PDBTitle: a flipqr complex forms the core of the salmonella type iii secretion2 system export apparatus.
20c6f2dI_
19.6 18
PDB header:protein transport
Chain: I: PDB Molecule:flagellar biosynthetic protein fliq;
PDBTitle: a flipqr complex forms the core of the salmonella type iii secretion2 system export apparatus.
21c6r6bI_
not modelled 19.4 18
PDB header:protein transport
Chain: I: PDB Molecule:surface presentation of antigens protein spaq;
PDBTitle: structure of the core shigella flexneri type iii secretion system2 export gate complex sctrst (spa24/spa9/spa29).
22c2y69Q_
not modelled 17.8 20
PDB header:electron transport
Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
23c2momC_
not modelled 17.6 24
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
24c2momB_
not modelled 17.6 24
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
25c5mg3D_
not modelled 17.6 18
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
26c2yvxD_
not modelled 17.1 16
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
27c4dgwA_
not modelled 16.2 15
PDB header:splicing
Chain: A: PDB Molecule:pre-mrna-splicing factor prp9;
PDBTitle: crystal structure of the sf3a splicing factor complex of u2 snrnp
28c3k07A_
not modelled 16.2 13
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
29c5tj5A_
not modelled 15.5 8
PDB header:motor protein
Chain: A: PDB Molecule:v-type proton atpase subunit a;
PDBTitle: atomic model for the membrane-embedded motor of a eukaryotic v-atpase
30d1v54d_
not modelled 15.5 20
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit IV
Family:Mitochondrial cytochrome c oxidase subunit IV
31d1kpla_
not modelled 15.5 13
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
32c6iiuA_
not modelled 13.9 10
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562,thromboxane a2 receptor,rubredoxin,
PDBTitle: crystal structure of the human thromboxane a2 receptor bound to2 ramatroban
33c4i7zE_
not modelled 13.7 24
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of cytochrome b6f in dopg, with disordered rieske2 iron-sulfur protein soluble domain
34c4pv1E_
not modelled 13.7 24
PDB header:electron transport/inhibitor
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: cytochrome b6f structure from m. laminosus with the quinone analog2 inhibitor stigmatellin
35c2kr6A_
not modelled 13.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
36d1xo1a1
not modelled 12.9 19
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
37c6mctF_
not modelled 12.7 30
PDB header:de novo protein
Chain: F: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
38c6mctJ_
not modelled 12.7 30
PDB header:de novo protein
Chain: J: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
39c6mctM_
not modelled 12.7 30
PDB header:de novo protein
Chain: M: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
40c6mctO_
not modelled 12.7 30
PDB header:de novo protein
Chain: O: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
41c6mctA_
not modelled 12.7 30
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
42c6mctI_
not modelled 12.7 30
PDB header:de novo protein
Chain: I: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
43c6mctC_
not modelled 12.7 30
PDB header:de novo protein
Chain: C: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
44c6mq2D_
not modelled 12.7 30
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
45c6mpwA_
not modelled 12.7 30
PDB header:de novo protein
Chain: A: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-1
46c6mctL_
not modelled 12.7 30
PDB header:de novo protein
Chain: L: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
47c6mctB_
not modelled 12.7 30
PDB header:de novo protein
Chain: B: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
48c6mctK_
not modelled 12.7 30
PDB header:de novo protein
Chain: K: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
49c6mctE_
not modelled 12.7 30
PDB header:de novo protein
Chain: E: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
50c6mctN_
not modelled 12.7 30
PDB header:de novo protein
Chain: N: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
51c6mctG_
not modelled 12.7 30
PDB header:de novo protein
Chain: G: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
52c6mctD_
not modelled 12.7 30
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
53c6mctH_
not modelled 12.7 30
PDB header:de novo protein
Chain: H: PDB Molecule:mini-evgl membrane protein;
PDBTitle: a designed pentameric membrane protein stabilized by van der waals2 interaction
54c3fgxA_
not modelled 12.7 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:rbstp2171;
PDBTitle: structure of uncharacterised protein rbstp2171 from bacillus2 stearothermophilus
55c4nawK_
not modelled 12.1 60
PDB header:protein transport/ligase
Chain: K: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
56c4gdkC_
not modelled 12.1 60
PDB header:protein binding
Chain: C: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5 conjugate in complex with an n-2 terminal fragment of atg16l1
57c4nawC_
not modelled 12.1 60
PDB header:protein transport/ligase
Chain: C: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
58c4gdlC_
not modelled 12.1 60
PDB header:protein binding
Chain: C: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5 conjugate in complex with an n-2 terminal fragment of atg16l1
59c4gdkF_
not modelled 11.9 60
PDB header:protein binding
Chain: F: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5 conjugate in complex with an n-2 terminal fragment of atg16l1
60c2e74E_
not modelled 11.8 24
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
61d2e74e1
not modelled 11.8 24
Fold:Single transmembrane helix
Superfamily:PetL subunit of the cytochrome b6f complex
Family:PetL subunit of the cytochrome b6f complex
62c1vf5E_
not modelled 11.8 24
PDB header:photosynthesis
Chain: E: PDB Molecule:protein pet l;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
63c2e75E_
not modelled 11.8 24
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
64c1vf5R_
not modelled 11.8 24
PDB header:photosynthesis
Chain: R: PDB Molecule:protein pet l;
PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus
65c4h0lE_
not modelled 11.8 24
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: cytochrome b6f complex crystal structure from mastigocladus laminosus2 with n-side inhibitor nqno
66c4h13E_
not modelled 11.8 24
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex from mastigocladus2 laminosus with tds
67c2e76E_
not modelled 11.8 24
PDB header:photosynthesis
Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
68c1i8tB_
not modelled 11.7 20
PDB header:isomerase
Chain: B: PDB Molecule:udp-galactopyranose mutase;
PDBTitle: strcuture of udp-galactopyranose mutase from e.coli
69c6gv9K_
not modelled 11.7 40
PDB header:protein fibril
Chain: K: PDB Molecule:prepilin peptidase-dependent protein d;
PDBTitle: structure of the type iv pilus from enterohemorrhagic escherichia coli2 (ehec)
70c2lonA_
not modelled 11.6 12
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
71c2ht2B_
not modelled 11.5 10
PDB header:membrane protein
Chain: B: PDB Molecule:h(+)/cl(-) exchange transporter clca;
PDBTitle: structure of the escherichia coli clc chloride channel2 y445h mutant and fab complex
72c1z8yN_
not modelled 11.2 29
PDB header:virus
Chain: N: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
73c1z8yP_
not modelled 11.2 29
PDB header:virus
Chain: P: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
74c1z8yJ_
not modelled 11.2 29
PDB header:virus
Chain: J: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
75c1z8yL_
not modelled 11.2 29
PDB header:virus
Chain: L: PDB Molecule:spike glycoprotein e2;
PDBTitle: mapping the e2 glycoprotein of alphaviruses
76c2lomA_
not modelled 11.2 16
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1a;
PDBTitle: backbone structure of human membrane protein higd1a
77c2mbhB_
not modelled 11.0 33
PDB header:transcription
Chain: B: PDB Molecule:krueppel-like factor 1;
PDBTitle: nmr structure of eklf(22-40)/ubiquitin complex
78c2k1aA_
not modelled 10.8 18
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
79c5mdxX_
not modelled 10.7 32
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
80c5mdxx_
not modelled 10.7 32
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
81c4mo2A_
not modelled 10.7 25
PDB header:isomerase
Chain: A: PDB Molecule:udp-galactopyranose mutase;
PDBTitle: crystal structure of udp-n-acetylgalactopyranose mutase from2 campylobacter jejuni
82d1scfa_
not modelled 10.5 18
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
83c1scfA_
not modelled 10.5 18
PDB header:hormone/growth factor
Chain: A: PDB Molecule:stem cell factor;
PDBTitle: human recombinant stem cell factor
84c4nawO_
not modelled 10.0 60
PDB header:protein transport/ligase
Chain: O: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
85c4nawG_
not modelled 10.0 60
PDB header:protein transport/ligase
Chain: G: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
86d2imja1
not modelled 10.0 42
Fold:Cystatin-like
Superfamily:NTF2-like
Family:PFL3262-like
87c4b03A_
not modelled 9.4 7
PDB header:virus
Chain: A: PDB Molecule:dengue virus 1 e protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
88c5m1gB_
not modelled 9.2 21
PDB header:viral protein
Chain: B: PDB Molecule:gag protein;
PDBTitle: structure of a spumaretrovirus gag central domain reveals an ancient2 retroviral capsid
89c5azcA_
not modelled 9.2 11
PDB header:transferase
Chain: A: PDB Molecule:prolipoprotein diacylglyceryl transferase;
PDBTitle: crystal structure of escherichia coli lgt in complex with2 phosphatidylglycerol
90c5a63C_
not modelled 9.1 12
PDB header:hydrolase
Chain: C: PDB Molecule:gamma-secretase subunit aph-1a;
PDBTitle: cryo-em structure of the human gamma-secretase complex at 3.4 angstrom2 resolution.
91c4yu5A_
not modelled 9.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:immune inhibitor a, metalloprotease;
PDBTitle: crystal structure of selenomethionine variant of bacillus anthracis2 immune inhibitor a2 peptidase zymogen
92d1zvca1
not modelled 8.9 34
Fold:AOC barrel-like
Superfamily:Allene oxide cyclase-like
Family:Allene oxide cyclase-like
93c4l6rA_
not modelled 8.7 11
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562 and glucagon receptor chimera;
PDBTitle: structure of the class b human glucagon g protein coupled receptor
94c2qzvB_
not modelled 8.6 23
PDB header:structural protein
Chain: B: PDB Molecule:major vault protein;
PDBTitle: draft crystal structure of the vault shell at 9 angstroms2 resolution
95c1ltxR_
not modelled 8.6 20
PDB header:transferase/protein binding
Chain: R: PDB Molecule:rab escort protein 1;
PDBTitle: structure of rab escort protein-1 in complex with rab geranylgeranyl2 transferase and isoprenoid
96c2e1mA_
not modelled 8.6 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-glutamate oxidase;
PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6
97c5ws4A_
not modelled 8.5 20
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
98c1emzA_
not modelled 8.1 57
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein e1;
PDBTitle: solution structure of fragment (350-370) of the2 transmembrane domain of hepatitis c envelope glycoprotein3 e1
99d2dw4a2
not modelled 8.0 20
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below