Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1782_(-)_2017747_2019267
DateFri Aug 2 13:30:39 BST 2019
Unique Job IDf149d89865bd2d03
SequenceVAEESRGQRG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:49.278 Y:63.039 Z:100.999
Model (left) based on template c4kk7A_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion system protein eccb1;
PDBTitle: structure of eccb1 from the type vii (esx-1) secretion system of2 mycobacterium tuberculosis.
Confidence and coverage
Confidence:100.0% Coverage: 76%
384 residues ( 76% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4kk7A_
100.0 33
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion system protein eccb1;
PDBTitle: structure of eccb1 from the type vii (esx-1) secretion system of2 mycobacterium tuberculosis.
2c5cyuA_
100.0 33
PDB header:membrane protein
Chain: A: PDB Molecule:conserved membrane protein;
PDBTitle: structure of the soluble domain of eccb1 from the mycobacterium2 smegmatis esx-1 secretion system.
3d2fb5a1
43.6 14
Fold:YojJ-like
Superfamily:YojJ-like
Family:YojJ-like
4c6navI_
33.8 26
PDB header:structural protein
Chain: I: PDB Molecule:m9ud72;
PDBTitle: cryo-em reconstruction of sulfolobus islandicus lal14/1 pilus
5c5xefA_
20.0 9
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein flis;
PDBTitle: crystal structure of flagellar chaperone from bacteria
6c2k9yB_
19.5 27
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
7c2k9yA_
19.5 27
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
8c2l92A_
16.0 27
PDB header:dna binding protein
Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns;
PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f
9c1vh6A_
14.5 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:flagellar protein flis;
PDBTitle: crystal structure of a flagellar protein
10d1vh6a_
14.5 23
Fold:Four-helical up-and-down bundle
Superfamily:Flagellar export chaperone FliS
Family:Flagellar export chaperone FliS
11c6f0kA_
14.2 19
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
12c3k1iA_
14.0 9
PDB header:chaperone
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal strcture of flis-hp1076 complex in h. pylori
13c2ixsB_
13.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:sdai restriction endonuclease;
PDBTitle: structure of sdai restriction endonuclease
14c6hrbD_
13.6 26
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e2 inward-facing state2 (state 2)
15c5mrwH_
13.6 26
PDB header:hydrolase
Chain: H: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
16c6hraD_
13.6 26
PDB header:membrane protein
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: cryo-em structure of the kdpfabc complex in an e1 outward-facing state2 (state 1)
17c5mrwL_
13.6 26
PDB header:hydrolase
Chain: L: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
18c5mrwD_
13.6 26
PDB header:hydrolase
Chain: D: PDB Molecule:potassium-transporting atpase kdpf subunit;
PDBTitle: structure of the kdpfabc complex
19c2ciuA_
12.9 22
PDB header:protein transport
Chain: A: PDB Molecule:import inner membrane translocase subunit tim21
PDBTitle: structure of the ims domain of the mitochondrial import2 protein tim21 from s. cerevisiae
20c3c1zA_
11.1 13
PDB header:dna binding protein
Chain: A: PDB Molecule:dna integrity scanning protein disa;
PDBTitle: structure of the ligand-free form of a bacterial dna damage sensor2 protein
21c2levA_
not modelled 10.9 45
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ler;
PDBTitle: structure of the dna complex of the c-terminal domain of ler
22c3hshA_
not modelled 10.7 21
PDB header:protein binding
Chain: A: PDB Molecule:collagen alpha-1(xviii) chain;
PDBTitle: crystal structure of human collagen xviii trimerization domain2 (tetragonal crystal form)
23c6gyyB_
not modelled 9.6 17
PDB header:transferase
Chain: B: PDB Molecule:diadenylate cyclase;
PDBTitle: crystal structure of daca from staphylococcus aureus, n166c/t172c2 double mutant
24c6cfwE_
not modelled 9.6 18
PDB header:membrane protein
Chain: E: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
25d1y7ma1
not modelled 8.8 15
Fold:L,D-transpeptidase catalytic domain-like
Superfamily:L,D-transpeptidase catalytic domain-like
Family:L,D-transpeptidase catalytic domain-like
26d1hnra_
not modelled 8.7 20
Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
27c2jr1A_
not modelled 8.3 27
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence regulator;
PDBTitle: solution structure of the dna binding domain of a nucleoid-associated2 protein, h-ns, from the phytopathogen xylella fastidiosa.
28c3n3fB_
not modelled 8.2 24
PDB header:protein binding
Chain: B: PDB Molecule:collagen alpha-1(xv) chain;
PDBTitle: crystal structure of the human collagen xv trimerization domain: a2 potent trimerizing unit common to multiplexin collagens
29c6ch3B_
not modelled 8.1 27
PDB header:structural protein
Chain: B: PDB Molecule:flagellar secretion chaperone flis,flagellin;
PDBTitle: crystal structure of the cytoplasmic domain of flha and flis-flic2 complex
30d2zjru1
not modelled 7.9 21
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
31d2nn6g2
not modelled 6.9 25
Fold:Barrel-sandwich hybrid
Superfamily:Ribosomal L27 protein-like
Family:ECR1 N-terminal domain-like
32c2l02B_
not modelled 6.1 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bt2368 from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr375
33c2lf3A_
not modelled 6.0 56
PDB header:signaling protein
Chain: A: PDB Molecule:effector protein hopab3;
PDBTitle: solution nmr structure of hoppmal_281_385 from pseudomonas syringae2 pv. maculicola str. es4326, midwest center for structural genomics3 target apc40104.5 and northeast structural genomics consortium target4 pst2a
34c5zjiO_
not modelled 6.0 28
PDB header:membrane protein
Chain: O: PDB Molecule:16kda membrane protein;
PDBTitle: structure of photosystem i supercomplex with light-harvesting2 complexes i and ii
35d1vqou1
not modelled 5.1 12
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Ribosomal protein L24e
36c3ccjU_
not modelled 5.1 12
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l24e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below