Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1786_(-)_2024835_2025038
DateFri Aug 2 13:30:39 BST 2019
Unique Job IDd33e1f842638145d
SequenceVKVRLDPSRC ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.964 Y:31.439 Z:34.196
Model (left) based on template c4id8A_
Top template information
PDB header:electron transport
Chain: A: PDB Molecule:putative ferredoxin;
PDBTitle: the crystal structure of a [3fe-4s] ferredoxin associated with2 cyp194a4 from r. palustris haa2
Confidence and coverage
Confidence: 99.7% Coverage: 96%
64 residues ( 96% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4id8A_



99.7 33
PDB header:electron transport
Chain: A: PDB Molecule:putative ferredoxin;
PDBTitle: the crystal structure of a [3fe-4s] ferredoxin associated with2 cyp194a4 from r. palustris haa2
2d1iqza_



99.6 21
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
3d1fxra_



99.6 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
4d1sj1a_



99.5 30
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
5d1vjwa_



99.5 31
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
6c1dwlA_



99.2 22
PDB header:electron transfer
Chain: A: PDB Molecule:ferredoxin i;
PDBTitle: the ferredoxin-cytochrome complex using heteronuclear nmr2 and docking simulation
7c3gyxJ_



98.6 27
PDB header:oxidoreductase
Chain: J: PDB Molecule:adenylylsulfate reductase;
PDBTitle: crystal structure of adenylylsulfate reductase from2 desulfovibrio gigas
8d1xera_



98.5 18
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Archaeal ferredoxins
9d1jnrb_



98.5 23
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
10c5t5iG_



98.5 24
PDB header:oxidoreductase
Chain: G: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdg;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
11c5odhG_



98.5 27
PDB header:oxidoreductase
Chain: G: PDB Molecule:heterodisulfide reductase, subunit a;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus soaked with heterodisulfide3 for 3.5 minutes
12c5c4iB_



98.3 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:oxalate oxidoreductase subunit delta;
PDBTitle: structure of an oxalate oxidoreductase
13c6humI_



98.3 19
PDB header:proton transport
Chain: I: PDB Molecule:nad(p)h-quinone oxidoreductase subunit i;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
14c1gthD_



98.3 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary complex with2 nadph and 5-iodouracil
15d1gtea5



98.3 13
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
16d2fug91



98.3 24
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
17c2fugG_



98.3 24
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
18c2gmhA_



98.2 3
PDB header:oxidoreductase
Chain: A: PDB Molecule:electron transfer flavoprotein-ubiquinone
PDBTitle: structure of porcine electron transfer flavoprotein-2 ubiquinone oxidoreductase in complexed with ubiquinone
19d1blua_



98.2 16
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
20c6cfwN_



98.2 22
PDB header:membrane protein
Chain: N: PDB Molecule:nadh-plastoquinone oxidoreductase subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
21d3c8ya3



not modelled 98.2 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
22c6cipD_



not modelled 98.2 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: pyruvate:ferredoxin oxidoreductase from moorella thermoacetica with2 acetyl-tpp bound
23c2vpyB_



not modelled 98.2 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:nrfc protein;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
24c6gcsI_



not modelled 98.2 17
PDB header:oxidoreductase
Chain: I: PDB Molecule:tyky subunit (nuim);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
25d1fxda_



not modelled 98.1 19
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Single 4Fe-4S cluster ferredoxin
26c5t5iN_



not modelled 98.1 12
PDB header:oxidoreductase
Chain: N: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdf;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
27d1hfel2



not modelled 98.1 22
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
28d1dura_



not modelled 98.1 15
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
29c5lc5I_



not modelled 98.1 20
PDB header:oxidoreductase
Chain: I: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 8,
PDBTitle: structure of mammalian respiratory complex i, class2
30c4heaO_



not modelled 98.1 25
PDB header:oxidoreductase
Chain: O: PDB Molecule:nadh-quinone oxidoreductase subunit 9;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
31d2fug34



not modelled 98.1 19
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
32c2fgoA_



not modelled 98.0 11
PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: structure of the 2[4fe-4s] ferredoxin from pseudomonas2 aeruginosa
33c1kqfB_



not modelled 98.0 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
34d1jb0c_



not modelled 98.0 23
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
35d1rgva_



not modelled 98.0 13
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
36c1hfeL_



not modelled 98.0 20
PDB header:hydrogenase
Chain: L: PDB Molecule:protein (fe-only hydrogenase (e.c.1.18.99.1)
PDBTitle: 1.6 a resolution structure of the fe-only hydrogenase from2 desulfovibrio desulfuricans
37c2c3yA_



not modelled 98.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate-ferredoxin oxidoreductase;
PDBTitle: crystal structure of the radical form of2 pyruvate:ferredoxin oxidoreductase from desulfovibrio3 africanus
38c4z3zE_



not modelled 97.9 18
PDB header:oxidoreductase
Chain: E: PDB Molecule:iron-sulfur cluster-binding oxidoreductase, putative
PDBTitle: active site complex bambc of benzoyl coenzyme a reductase in complex2 with zinc
39d1kqfb1



not modelled 97.9 17
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
40c2zvsB_



not modelled 97.9 14
PDB header:electron transport
Chain: B: PDB Molecule:uncharacterized ferredoxin-like protein yfhl;
PDBTitle: crystal structure of the 2[4fe-4s] ferredoxin from escherichia coli
41d2fdna_



not modelled 97.8 11
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
42d1h98a_



not modelled 97.8 27
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
43c6czaB_



not modelled 97.8 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:4fe-4s ferredoxin, iron-sulfur binding domain protein;
PDBTitle: the arsenate respiratory reductase (arr) complex from shewanella sp.2 ana-3 bound to phosphate
44d1bc6a_



not modelled 97.8 22
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
45c1c4cA_



not modelled 97.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
46c1gx7A_



not modelled 97.8 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [fe] hydrogenase large subunit;
PDBTitle: best model of the electron transfer complex between cytochrome c3 and2 [fe]-hydrogenase
47c1ti2F_



not modelled 97.8 16
PDB header:oxidoreductase
Chain: F: PDB Molecule:pyrogallol hydroxytransferase small subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol transhydroxylase from2 pelobacter acidigallici
48d7fd1a_



not modelled 97.7 18
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:7-Fe ferredoxin
49c5xf9F_



not modelled 97.7 22
PDB header:oxidoreductase
Chain: F: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
50d2gmha3



not modelled 97.6 3
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:ETF-QO domain-like
51d1fcaa_



not modelled 97.6 12
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
52c2ivfB_



not modelled 97.6 27
PDB header:oxidoreductase
Chain: B: PDB Molecule:ethylbenzene dehydrogenase beta-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
53d1vlfn2



not modelled 97.6 18
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
54c2v2kB_



not modelled 97.6 21
PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin;
PDBTitle: the crystal structure of fdxa, a 7fe ferredoxin from2 mycobacterium smegmatis
55c5lnk3_



not modelled 97.5 19
PDB header:oxidoreductase
Chain: 3: PDB Molecule:mitochondrial complex i, 75 kda subunit;
PDBTitle: entire ovine respiratory complex i
56c4yddF_



not modelled 97.5 19
PDB header:oxidoreductase
Chain: F: PDB Molecule:dmso reductase family type ii enzyme, iron-sulfur subunit;
PDBTitle: crystal structure of the perchlorate reductase pcrab from azospira2 suillum ps
57c6gcsA_



not modelled 97.5 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:75-kda protein (nuam);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
58d1clfa_



not modelled 97.5 19
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Short-chain ferredoxins
59c5lc5G_



not modelled 97.4 21
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class2
60c6fahE_



not modelled 97.4 20
PDB header:flavoprotein
Chain: E: PDB Molecule:caffeyl-coa reductase-etf complex subunit care;
PDBTitle: molecular basis of the flavin-based electron-bifurcating caffeyl-coa2 reductase reaction
61d1h0hb_



not modelled 97.3 16
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
62c5ldxG_



not modelled 97.1 21
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class3.
63c5ldwG_



not modelled 97.1 21
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-ubiquinone oxidoreductase 75 kda subunit,
PDBTitle: structure of mammalian respiratory complex i, class1
64c2fugC_



not modelled 97.1 21
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
65d2c42a5



not modelled 97.0 20
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
66d1y5ib1



not modelled 96.9 15
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
67d3c7bb1



not modelled 95.7 22
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
68c2v4jA_



not modelled 95.5 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
69c6f0kB_



not modelled 95.5 22
PDB header:membrane protein
Chain: B: PDB Molecule:fe-s-cluster-containing hydrogenase;
PDBTitle: alternative complex iii
70c2v4jE_



not modelled 95.4 21
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
71c3j16B_



not modelled 95.3 15
PDB header:ribosome
Chain: B: PDB Molecule:rli1p;
PDBTitle: models of ribosome-bound dom34p and rli1p and their ribosomal binding2 partners
72c3c7bE_



not modelled 95.2 25
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
73c3c7bA_



not modelled 94.4 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
74c3bk7A_



not modelled 92.9 25
PDB header:hydrolyase/translation
Chain: A: PDB Molecule:abc transporter atp-binding protein;
PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein from2 pyrococcus abysii
75c5dqrA_



not modelled 91.0 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:7-hydroxymethyl chlorophyll a reductase, chloroplastic;
PDBTitle: the crystal structure of arabidopsis 7-hydroxymethyl chlorophyll a2 reductase (hcar)
76c1nekB_



not modelled 90.8 19
PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
77c3vrbF_



not modelled 89.8 19
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: F: PDB Molecule:iron-sulfur subunit of succinate dehydrogenase;
PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum with the specific inhibitor flutolanil and3 substrate fumarate
78c3zfsB_



not modelled 89.4 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:f420-reducing hydrogenase, subunit gamma;
PDBTitle: cryo-em structure of the f420-reducing nife-hydrogenase from a2 methanogenic archaeon with bound substrate
79d1nekb1



not modelled 89.1 19
Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
80c2h89B_



not modelled 87.9 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
81d2v4jb1



not modelled 87.4 26
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
82c6btmB_



not modelled 87.0 32
PDB header:membrane protein
Chain: B: PDB Molecule:alternative complex iii subunit b;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
83d1kf6b1



not modelled 83.2 32
Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
84d2bs2b1



not modelled 82.0 25
Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
85c3cf4A_



not modelled 80.5 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:acetyl-coa decarboxylase/synthase alpha subunit;
PDBTitle: structure of the codh component of the m. barkeri acds complex
86c5odcC_



not modelled 79.2 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:heterodisulfide reductase, subunit c;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus at 2.3 a resolution
87c2bs2E_



not modelled 76.2 25
PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
88c5xmjJ_



not modelled 74.4 22
PDB header:electron transport
Chain: J: PDB Molecule:succinate dehydrogenase iron-sulfur subunit;
PDBTitle: crystal structure of quinol:fumarate reductase from desulfovibrio2 gigas
89c4ur1A_



not modelled 73.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:tetrachloroethene reductive dehalogenase catalytic subunit
PDBTitle: crystal structure of the pce reductive dehalogenase from s.2 multivorans in complex with dibromoethene
90c2b76N_



not modelled 70.3 38
PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
91c4rasC_



not modelled 68.9 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:oxidoreductase, nad-binding/iron-sulfur cluster-binding
PDBTitle: reductive dehalogenase structure suggests a mechanism for b12-2 dependent dehalogenation
92c5d6sB_



not modelled 62.2 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: structure of epoxyqueuosine reductase from streptococcus thermophilus.
93c5d0bB_



not modelled 58.8 29
PDB header:oxidoreductase/rna
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: crystal structure of epoxyqueuosine reductase with a trna-tyr2 epoxyqueuosine-modified trna stem loop
94d2v4ja1



not modelled 43.9 29
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
95c2vdcI_



not modelled 42.6 29
PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from cryo-2 electron microscopy and its oligomerization behavior in solution:3 functional implications.
96d3c7ba1



not modelled 42.1 21
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
97c4ylfD_



not modelled 29.8 29
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase subunit a;
PDBTitle: insights into flavin-based electron bifurcation via the nadh-dependent2 reduced ferredoxin-nadp oxidoreductase structure
98c5jcaL_



not modelled 24.2 29
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-dependent ferredoxin:nadp oxidoreductase (nfni)
PDBTitle: nadp(h) bound nadh-dependent ferredoxin:nadp oxidoreductase (nfni)2 from pyrococcus furiosus
99c4p6vA_



not modelled 22.2 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit a;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae

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