Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1794_(-)_2031073_2031975
DateFri Aug 2 13:30:40 BST 2019
Unique Job IDabce7bc38a736141
SequenceMDQQSTRTDI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:72.938 Y:51.174 Z:45.344
Model (left) based on template c4kxrC_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:espg5;
PDBTitle: structure of the mycobacterium tuberculosis type vii secretion system2 chaperone espg5 in complex with pe25-ppe41 dimer
Confidence and coverage
Confidence:100.0% Coverage: 92%
276 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4kxrC_



100.0 99
PDB header:protein transport
Chain: C: PDB Molecule:espg5;
PDBTitle: structure of the mycobacterium tuberculosis type vii secretion system2 chaperone espg5 in complex with pe25-ppe41 dimer
2c4l4wB_



100.0 21
PDB header:protein transport
Chain: B: PDB Molecule:espg3;
PDBTitle: structure of espg3 chaperone from the type vii (esx-3) secretion2 system
3c4w4iA_



100.0 21
PDB header:protein transport
Chain: A: PDB Molecule:esx-3 secretion-associated protein espg3;
PDBTitle: crystal structure of espg3 from the esx-3 type vii secretion system of2 m. tuberculosis
4c4rclB_



100.0 20
PDB header:chaperone
Chain: B: PDB Molecule:espg3;
PDBTitle: structure of espg3 chaperone from the type vii (esx-3) secretion2 system, space group p43212
5c5vbaA_



100.0 26
PDB header:chaperone, hydrolase
Chain: A: PDB Molecule:lysozyme, esx-1 secretion-associated protein espg1 chimera;
PDBTitle: structure of espg1 chaperone from the type vii (esx-1) secretion2 system determined with the assistance of n-terminal t4 lysozyme3 fusion
6d1w79a1



24.6 16
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:Dac-like
7c4rdkB_



17.6 21
PDB header:viral protein
Chain: B: PDB Molecule:capsid;
PDBTitle: crystal structure of norovirus boxer p domain in complex with lewis b2 tetrasaccharide
8c3a3eB_



15.5 20
PDB header:hydrolase
Chain: B: PDB Molecule:penicillin-binding protein 4;
PDBTitle: crystal structure of penicillin binding protein 4 (dacb) from2 haemophilus influenzae, complexed with novel beta-lactam (cmv)
9d1hynp_



13.8 15
Fold:Phoshotransferase/anion transport protein
Superfamily:Phoshotransferase/anion transport protein
Family:Anion transport protein, cytoplasmic domain
10d1ppva_



13.1 12
Fold:Nudix
Superfamily:Nudix
Family:IPP isomerase-like
11c1hynQ_



11.8 15
PDB header:membrane protein
Chain: Q: PDB Molecule:band 3 anion transport protein;
PDBTitle: crystal structure of the cytoplasmic domain of human erythrocyte band-2 3 protein
12d1rk8c_



11.5 45
Fold:WW domain-like
Superfamily:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
Family:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
13c1rk8C_



11.5 45
PDB header:translation
Chain: C: PDB Molecule:within the bgcn gene intron protein;
PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex
14c2ei5B_



11.2 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ttha0061;
PDBTitle: crystal structure of hypothetical protein(ttha0061) from thermus2 thermophilus
15d1u94a2



10.3 25
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
16d1mo6a2



10.2 38
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
17d2fvva1



10.1 21
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
18c2fvvA_



10.1 21
PDB header:hydrolase
Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase 1;
PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1
19c2v4oB_



10.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:multifunctional protein sur e;
PDBTitle: crystal structure of salmonella typhimurium sure at 2.752 angstrom resolution in monoclinic form
20d1rrqa2



9.7 11
Fold:Nudix
Superfamily:Nudix
Family:MutY C-terminal domain-like
21d1kdga2



not modelled 9.4 21
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:GMC oxidoreductases
22d1xp8a2



not modelled 9.2 13
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
23d1ubea2



not modelled 9.1 38
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
24c2ly2A_



not modelled 8.7 26
PDB header:rna binding protein
Chain: A: PDB Molecule:tudor domain-containing protein 7;
PDBTitle: nmr structure of the second and third lotus domains of tudor domain-2 containing protein 7 (nmr ensemble overlay for lotus #3)
25d2ex2a1



not modelled 8.6 17
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:Dac-like
26d1w5da1



not modelled 8.3 9
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:Dac-like
27d1v7ba2



not modelled 8.1 15
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
28c4dibF_



not modelled 7.5 33
PDB header:oxidoreductase
Chain: F: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: the crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 bacillus anthracis str. sterne
29c2x5kO_



not modelled 7.4 33
PDB header:oxidoreductase
Chain: O: PDB Molecule:d-erythrose-4-phosphate dehydrogenase;
PDBTitle: structure of an active site mutant of the d-erythrose-4-phosphate2 dehydrogenase from e. coli
30c5fgoA_



not modelled 7.3 7
PDB header:dna binding protein
Chain: A: PDB Molecule:cg1507-pb, isoform b;
PDBTitle: crystal structure of d. melanogaster pur-alpha repeat iii.
31c2eh6A_



not modelled 7.2 10
PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
32c2o1cB_



not modelled 7.1 15
PDB header:hydrolase
Chain: B: PDB Molecule:datp pyrophosphohydrolase;
PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase
33c4zyeA_



not modelled 7.1 21
PDB header:transferase
Chain: A: PDB Molecule:methylated-dna--protein-cysteine methyltransferase;
PDBTitle: crystal structure of sulfolobus solfataricus o6-methylguanine2 methyltransferase
34c2i5pO_



not modelled 7.0 22
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate2 dehydrogenase isoform 1 from k. marxianus
35c5jyfB_



not modelled 6.9 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: structures of streptococcus agalactiae gbs gapdh in different2 enzymatic states
36c4qx6A_



not modelled 6.7 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 streptococcus agalactiae nem316 at 2.46 angstrom resolution
37c1obfO_



not modelled 6.5 33
PDB header:glycolytic pathway
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: the crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from alcaligenes xylosoxidans at 1.7 a3 resolution.
38c5ur0B_



not modelled 6.4 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystallographic structure of glyceraldehyde-3-phosphate dehydrogenase2 from naegleria gruberi
39c3h9eO_



not modelled 6.4 33
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase, testis-specific;
PDBTitle: crystal structure of human sperm-specific glyceraldehyde-3-phosphate2 dehydrogenase (gapds) complex with nad and phosphate
40c5j9gB_



not modelled 6.4 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-p dehydrogenase;
PDBTitle: structure of lactobacillus acidophilus glyceraldehyde-3-phosphate2 dehydrogenase at 2.21 angstrom resolution
41c1s7cA_



not modelled 6.4 33
PDB header:structural genomics, oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of mes buffer bound form of glyceraldehyde 3-2 phosphate dehydrogenase from escherichia coli
42c2b4rQ_



not modelled 6.3 33
PDB header:oxidoreductase
Chain: Q: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 plasmodium falciparum at 2.25 angstrom resolution reveals intriguing3 extra electron density in the active site
43c3hq4R_



not modelled 6.3 11
PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase 1;
PDBTitle: crystal structure of c151s mutant of glyceraldehyde-3-phosphate2 dehydrogenase 1 (gapdh1) complexed with nad from staphylococcus3 aureus mrsa252 at 2.2 angstrom resolution
44d1v8ya_



not modelled 6.3 13
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
45d1g26a_



not modelled 6.2 50
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Granulin repeat
Family:Granulin repeat
46c2d2iO_



not modelled 6.2 22
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of nadp-dependent glyceraldehyde-3-2 phosphate dehydrogenase from synechococcus sp. complexed3 with nadp+
47c3cieC_



not modelled 6.2 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum
48c5ld5C_



not modelled 6.2 22
PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of a bacterial dehydrogenase at 2.19 angstroms2 resolution
49c3nx3A_



not modelled 6.1 12
PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
50c3b20R_



not modelled 6.1 22
PDB header:oxidoreductase
Chain: R: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase (nadp+);
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase2 complexed with nadfrom synechococcus elongatus"
51c2ep7B_



not modelled 6.0 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: structural study of project id aq_1065 from aquifex aeolicus vf5
52c1ihxD_



not modelled 6.0 33
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of two d-glyceraldehyde-3-phosphate2 dehydrogenase complexes: a case of asymmetry
53c1hdgO_



not modelled 6.0 33
PDB header:oxidoreductase (aldehy(d)-nad(a))
Chain: O: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: the crystal structure of holo-glyceraldehyde-3-phosphate dehydrogenase2 from the hyperthermophilic bacterium thermotoga maritima at 2.53 angstroms resolution
54d1qbea_



not modelled 6.0 20
Fold:RNA bacteriophage capsid protein
Superfamily:RNA bacteriophage capsid protein
Family:RNA bacteriophage capsid protein
55c4o9lA_



not modelled 5.9 17
PDB header:antiviral protein
Chain: A: PDB Molecule:mitochondrial antiviral signaling protein (mavs);
PDBTitle: crystal structure of horse mavs card domain mutant e26r
56c3docD_



not modelled 5.9 44
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: crystal structure of trka glyceraldehyde-3-phosphate dehydrogenase2 from brucella melitensis
57c3hjaB_



not modelled 5.9 44
PDB header:oxidoreductase
Chain: B: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 borrelia burgdorferi
58c2pkrI_



not modelled 5.8 22
PDB header:oxidoreductase
Chain: I: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase aor;
PDBTitle: crystal structure of (a+cte)4 chimeric form of photosyntetic2 glyceraldehyde-3-phosphate dehydrogenase, complexed with nadp
59c1cerC_



not modelled 5.8 22
PDB header:oxidoreductase (aldehyde(d)-nad(a))
Chain: C: PDB Molecule:holo-d-glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: determinants of enzyme thermostability observed in the2 molecular structure of thermus aquaticus d-glyceraldehyde-3 3-phosphate dehydrogenase at 2.5 angstroms resolution
60c6ok4A_



not modelled 5.8 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase (gapdh)2 from chlamydia trachomatis with bound nad
61c1rm4O_



not modelled 5.7 22
PDB header:oxidoreductase
Chain: O: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase a;
PDBTitle: crystal structure of recombinant photosynthetic glyceraldehyde-3-2 phosphate dehydrogenase a4 isoform, complexed with nadp
62d1mgta1



not modelled 5.7 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
Family:Methylated DNA-protein cysteine methyltransferase, C-terminal domain
63c3sthA_



not modelled 5.7 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde-3-phosphate dehydrogenase from2 toxoplasma gondii
64d1vhza_



not modelled 5.6 2
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
65c1i32D_



not modelled 5.6 22
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors
66c3u5gK_



not modelled 5.4 21
PDB header:ribosome
Chain: K: PDB Molecule:40s ribosomal protein s10-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
67c3i4jC_



not modelled 5.2 16
PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from deinococcus2 radiodurans

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