Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1799_(lppT)_2039166_2039357
DateFri Aug 2 13:30:41 BST 2019
Unique Job IDfccee16f889e2cd5
SequenceMSVKSKNGRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.430 Y:18.741 Z:14.179
Model (left) based on template c6ijo4_
Top template information
PDB header:photosynthesis
Chain: 4: PDB Molecule:lhca4;
PDBTitle: photosystem i of chlamydomonas reinhardtii
Confidence and coverage
Confidence: 43.3% Coverage: 35%
22 residues ( 35% of your sequence) have been modelled with 43.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ijo4_
43.3 50
PDB header:photosynthesis
Chain: 4: PDB Molecule:lhca4;
PDBTitle: photosystem i of chlamydomonas reinhardtii
2c6igz6_
41.1 31
PDB header:plant protein
Chain: 6: PDB Molecule:lhca-g;
PDBTitle: structure of psi-lhci
3c6igz7_
40.6 50
PDB header:plant protein
Chain: 7: PDB Molecule:lhca-h;
PDBTitle: structure of psi-lhci
4c6igz3_
40.4 36
PDB header:plant protein
Chain: 3: PDB Molecule:lhca-d;
PDBTitle: structure of psi-lhci
5c6igz4_
38.5 45
PDB header:plant protein
Chain: 4: PDB Molecule:lhca-b;
PDBTitle: structure of psi-lhci
6c2wsf2_
37.3 29
PDB header:photosynthesis
Chain: 2: PDB Molecule:type ii chlorophyll a/b binding protein from photosystem i;
PDBTitle: improved model of plant photosystem i
7c6ijo2_
36.8 38
PDB header:photosynthesis
Chain: 2: PDB Molecule:lhca2;
PDBTitle: photosystem i of chlamydomonas reinhardtii
8c3jcuR_
36.2 38
PDB header:membrane protein
Chain: R: PDB Molecule:chlorophyll a-b binding protein 29 kd (cp29);
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
9c6igz2_
36.0 42
PDB header:plant protein
Chain: 2: PDB Molecule:lhca-c;
PDBTitle: structure of psi-lhci
10c6ijo6_
35.3 42
PDB header:photosynthesis
Chain: 6: PDB Molecule:lhca6;
PDBTitle: photosystem i of chlamydomonas reinhardtii
11c6ijj8_
35.3 42
PDB header:membrane protein
Chain: 8: PDB Molecule:lhca8;
PDBTitle: photosystem i of chlamydomonas reinhardtii
12c5zgh1_
35.2 35
PDB header:photosynthesis
Chain: 1: PDB Molecule:lhcr1;
PDBTitle: cryo-em structure of the red algal psi-lhcr
13c3lw52_
34.2 45
PDB header:photosynthesis
Chain: 2: PDB Molecule:type ii chlorophyll a/b binding protein from photosystem i;
PDB Fragment:residues 81-246; PDBTitle: improved model of plant photosystem i
14c4rku4_
33.5 35
PDB header:photosynthesis
Chain: 4: PDB Molecule:chlorophyll a-b binding protein p4, chloroplastic;
PDBTitle: crystal structure of plant photosystem i at 3 angstrom resolution
15c3jcuS_
33.5 50
PDB header:membrane protein
Chain: S: PDB Molecule:chlorophyll a-b binding protein 26 kd (cp26);
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
16c6ijo1_
33.1 59
PDB header:photosynthesis
Chain: 1: PDB Molecule:lhca1;
PDBTitle: photosystem i of chlamydomonas reinhardtii
17c6igz9_
33.0 38
PDB header:plant protein
Chain: 9: PDB Molecule:lhca-i;
PDBTitle: structure of psi-lhci
18c6a2wA_
32.5 35
PDB header:photosynthesis
Chain: A: PDB Molecule:protein fucoxanthin chlorophyl a/c protein;
PDBTitle: crystal structure of fucoxanthin chlorophyll a/c complex from2 phaeodactylum tricornutum
19c3pl9A_
31.5 38
PDB header:photosynthesis
Chain: A: PDB Molecule:chlorophyll a-b binding protein;
PDBTitle: crystal structure of spinach minor light-harvesting complex cp29 at2 2.80 angstrom resolution
20c6igz0_
31.3 42
PDB header:plant protein
Chain: 0: PDB Molecule:lhca-j;
PDBTitle: structure of psi-lhci
21c4xk88_
not modelled 30.9 42
PDB header:photosynthesis
Chain: 8: PDB Molecule:chlorophyll a-b binding protein 3, chloroplastic;
PDB Fragment:unp residues 2-81; PDBTitle: crystal structure of plant photosystem i-lhci super-complex at 2.82 angstrom resolution
22c5zgh2_
not modelled 27.5 45
PDB header:photosynthesis
Chain: 2: PDB Molecule:lhcr2;
PDBTitle: cryo-em structure of the red algal psi-lhcr
23c6igz5_
not modelled 26.6 35
PDB header:plant protein
Chain: 5: PDB Molecule:lhca-a;
PDBTitle: structure of psi-lhci
24d1rwta_
not modelled 26.6 42
Fold:Chlorophyll a-b binding protein
Superfamily:Chlorophyll a-b binding protein
Family:Chlorophyll a-b binding protein
25c6jo52_
not modelled 26.2 45
PDB header:photosynthesis
Chain: 2: PDB Molecule:chlorophyll a-b binding protein, chloroplastic;
PDBTitle: structure of the green algal photosystem i supercomplex with light-2 harvesting complex i
26c6ijj7_
not modelled 26.2 50
PDB header:membrane protein
Chain: 7: PDB Molecule:lhca7;
PDBTitle: photosystem i of chlamydomonas reinhardtii
27c5zgh3_
not modelled 26.2 55
PDB header:photosynthesis
Chain: 3: PDB Molecule:lhcr3;
PDBTitle: cryo-em structure of the red algal psi-lhcr
28c2o014_
not modelled 25.0 41
PDB header:photosynthesis
Chain: 4: PDB Molecule:psi light-harvesting antenna chlorophyll a/b-binding
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
29c6fos3_
not modelled 23.5 45
PDB header:photosynthesis
Chain: 3: PDB Molecule:similar to chlorophyll a/b-binding protein, cp24;
PDBTitle: cyanidioschyzon merolae photosystem i
30c2jpwA_
not modelled 21.6 70
PDB header:contractile protein
Chain: A: PDB Molecule:troponin i, cardiac muscle;
PDBTitle: solution structure of the bisphosphorylated cardiac2 specific n-extension of cardiac troponin i
31c2o013_
not modelled 20.8 50
PDB header:photosynthesis
Chain: 3: PDB Molecule:psi type iii chlorophyll a/b-binding protein;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
32c6ijo9_
not modelled 20.3 45
PDB header:photosynthesis
Chain: 9: PDB Molecule:lhca9;
PDBTitle: photosystem i of chlamydomonas reinhardtii
33c2o012_
not modelled 18.2 45
PDB header:photosynthesis
Chain: 2: PDB Molecule:type ii chlorophyll a/b binding protein from photosystem i;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
34c2wse3_
not modelled 17.7 50
PDB header:photosynthesis
Chain: 3: PDB Molecule:lhca3;
PDBTitle: improved model of plant photosystem i
35c2o011_
not modelled 16.5 34
PDB header:photosynthesis
Chain: 1: PDB Molecule:at3g54890;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
36c2wsc1_
not modelled 14.8 92
PDB header:photosynthesis
Chain: 1: PDB Molecule:at3g54890;
PDBTitle: improved model of plant photosystem i
37c5mdx4_
not modelled 14.0 43
PDB header:photosynthesis
Chain: 4: PDB Molecule:chlorophyll a-b binding protein, chloroplastic;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
38c3wmmY_
not modelled 10.8 40
PDB header:photosynthesis
Chain: Y: PDB Molecule:lh1 alpha polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
39c6et5b_
not modelled 8.5 53
PDB header:photosynthesis
Chain: B: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
40c2lf0A_
not modelled 8.3 60
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yibl;
PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scattering, nesg4 target sfr339/ocsp target sf3636
41d1xrda1
not modelled 8.2 40
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
42c1xrdA_
not modelled 8.2 40
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
43c3l48B_
not modelled 8.0 33
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
44c1pxqA_
not modelled 7.8 44
PDB header:antimicrobial protein
Chain: A: PDB Molecule:subtilisin a;
PDBTitle: structure of subtilisin a
45d1s99a_
not modelled 7.7 14
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:Putative thiamin/HMP-binding protein YkoF
46c2wse4_
not modelled 7.1 22
PDB header:photosynthesis
Chain: 4: PDB Molecule:chlorophyll a-b binding protein p4, chloroplastic;
PDBTitle: improved model of plant photosystem i
47c2xetB_
not modelled 7.0 25
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
48c4p5nB_
not modelled 5.9 56
PDB header:structural genomics
Chain: B: PDB Molecule:hypothetical protein cnag_02591;
PDBTitle: structure of cnag_02591 from cryptococcus neoformans
49d2q78a1
not modelled 5.3 26
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:TTHA0967-like

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