Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1802_(PPE30)_2043391_2044782
DateFri Aug 2 13:30:41 BST 2019
Unique Job ID337c52c5edab37d7
SequenceMDFGVLPPEI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.160 Y:74.321 Z:71.485
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 37%
172 residues ( 37% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 51% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 64
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38B_
100.0 35
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38b1
100.0 35
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
4c4xy3A_
100.0 16
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
98.7 20
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
97.9 14
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c3gvmA_
97.8 13
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
8c4iogD_
97.7 15
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
9c3zbhC_
97.7 18
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
97.1 16
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsB_
96.4 13
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12c4lwsA_
96.3 17
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
13d1wa8b1
96.1 21
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
14c4i0xA_
94.8 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
92.3 22
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16c4i0xJ_
79.4 20
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
17c5frgA_
20.7 75
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
18c1bkvA_
13.2 56
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
19c1bkvC_
12.6 56
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
20c1bkvB_
12.6 56
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
21c2ke4A_
not modelled 11.8 75
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
22c2i94B_
not modelled 11.8 83
PDB header:protein binding
Chain: B: PDB Molecule:rhodopsin kinase;
PDBTitle: nmr structure of recoverin bound to rhodopsin kinase
23d1khba2
not modelled 10.5 20
Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
24c2iu1A_
not modelled 9.9 17
PDB header:transcription
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of eif5 c-terminal domain
25c2fulE_
not modelled 9.4 28
PDB header:translation
Chain: E: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of the c-terminal domain of s. cerevisiae eif5
26d1xkna_
not modelled 7.4 15
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
27c1bcvA_
not modelled 7.1 56
PDB header:synthetic peptide
Chain: A: PDB Molecule:peptide corresponding to the major immunogen site of fmd
PDBTitle: synthetic peptide corresponding to the major immunogen site of fmd2 virus, nmr, 10 structures
28c4i6jB_
not modelled 7.0 44
PDB header:transcription
Chain: B: PDB Molecule:f-box/lrr-repeat protein 3;
PDBTitle: a ubiquitin ligase-substrate complex
29c4grdA_
not modelled 6.1 30
PDB header:lyase,isomerase
Chain: A: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit;
PDBTitle: crystal structure of phosphoribosylaminoimidazole carboxylase2 catalytic subunit from burkholderia cenocepacia j2315
30c3juiA_
not modelled 6.0 8
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b subunit epsilon;
PDBTitle: crystal structure of the c-terminal domain of human translation2 initiation factor eif2b epsilon subunit
31c1paqA_
not modelled 5.7 12
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b epsilon
PDBTitle: crystal structure of the catalytic fragment of eukaryotic2 initiation factor 2b epsilon
32d1paqa_
not modelled 5.7 12
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
33c5c3lA_
not modelled 5.6 18
PDB header:transport protein
Chain: A: PDB Molecule:nup54;
PDBTitle: structure of the metazoan nup62.nup58.nup54 nucleoporin complex.
34d1ui5a2
not modelled 5.5 28
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
35c2qsrA_
not modelled 5.4 20
PDB header:transcription
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor
36c4yh8B_
not modelled 5.4 18
PDB header:splicing
Chain: B: PDB Molecule:splicing factor u2af 59 kda subunit;
PDBTitle: structure of yeast u2af complex

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below