Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1809_(PPE33)_2051289_2052695
DateFri Aug 2 13:30:42 BST 2019
Unique Job ID2ef91d047f8de4cf
SequenceMDFGLQPPEI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.074 Y:72.050 Z:70.042
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 37%
173 residues ( 37% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 55% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 56
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38B_
100.0 36
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38b1
100.0 36
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
4c4xy3A_
100.0 14
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
98.1 21
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
97.3 8
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c3gvmA_
96.9 9
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
8c4iogD_
96.9 12
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
9c3zbhC_
96.8 10
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
96.0 16
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsB_
91.8 12
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12c4lwsA_
91.5 16
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
13d1wa8b1
90.2 16
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
14c4i0xA_
84.9 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
82.3 23
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16d1ui5a2
18.1 20
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
17c4i0xJ_
18.0 17
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
18c5frgA_
15.5 63
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
19c3mmyF_
15.5 36
PDB header:nuclear protein
Chain: F: PDB Molecule:nuclear pore complex protein nup98;
PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1
20d1xkna_
15.4 16
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
21c1bkvA_
not modelled 11.5 50
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
22c1bkvB_
not modelled 10.9 50
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
23c1bkvC_
not modelled 10.9 50
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
24c5c5zA_
not modelled 10.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:glutamyl-trna amidotransferase;
PDBTitle: crystal structure analysis of c4763, a uropathogenic e. coli-specific2 protein
25c5c3lA_
not modelled 9.8 32
PDB header:transport protein
Chain: A: PDB Molecule:nup54;
PDBTitle: structure of the metazoan nup62.nup58.nup54 nucleoporin complex.
26d2cyya2
not modelled 9.4 28
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
27d1nmpa_
not modelled 8.8 9
Fold:NIF3 (NGG1p interacting factor 3)-like
Superfamily:NIF3 (NGG1p interacting factor 3)-like
Family:NIF3 (NGG1p interacting factor 3)-like
28c2i94B_
not modelled 8.5 67
PDB header:protein binding
Chain: B: PDB Molecule:rhodopsin kinase;
PDBTitle: nmr structure of recoverin bound to rhodopsin kinase
29d1mtyg_
not modelled 8.5 50
Fold:Open three-helical up-and-down bundle
Superfamily:Methane monooxygenase hydrolase, gamma subunit
Family:Methane monooxygenase hydrolase, gamma subunit
30c2zbcH_
not modelled 8.1 31
PDB header:transcription
Chain: H: PDB Molecule:83aa long hypothetical transcriptional regulator asnc;
PDBTitle: crystal structure of sts042, a stand-alone ram module protein, from2 hyperthermophilic archaeon sulfolobus tokodaii strain7.
31c2ke4A_
not modelled 8.1 63
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
32c2w6jH_
not modelled 8.0 43
PDB header:hydrolase
Chain: H: PDB Molecule:f1-atpase delta subunit;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase during2 controlled dehydration: hydration state 5.
33c2kg7A_
not modelled 7.7 30
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein esxg (pe family protein);
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
34d2cfxa2
not modelled 7.6 21
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
35c3q94B_
not modelled 7.5 18
PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii;
PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor'
36c4xb6D_
not modelled 7.3 40
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
37c2cfxD_
not modelled 7.3 18
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
38d2jdih2
not modelled 7.2 36
Fold:Epsilon subunit of F1F0-ATP synthase N-terminal domain
Superfamily:Epsilon subunit of F1F0-ATP synthase N-terminal domain
Family:Epsilon subunit of F1F0-ATP synthase N-terminal domain
39c6ff48_
not modelled 7.1 33
PDB header:splicing
Chain: 8: PDB Molecule:splicing factor 3b subunit 2;
PDBTitle: human bact spliceosome core structure
40d1a0ia1
not modelled 7.1 33
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
41d2cg4a2
not modelled 7.1 13
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
42d1khba2
not modelled 7.1 10
Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
43c4pcqC_
not modelled 6.9 9
PDB header:transcription
Chain: C: PDB Molecule:possible transcriptional regulatory protein (probably
PDBTitle: crystal structure of mtbaldr (rv2779c)
44d1stza1
not modelled 6.8 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Heat-inducible transcription repressor HrcA, N-terminal domain
45c6fjlD_
not modelled 6.6 15
PDB header:metal binding protein
Chain: D: PDB Molecule:abc-type fe3+ transport system, periplasmic component;
PDBTitle: structure of ibps from dickeya dadantii
46c1bcvA_
not modelled 6.6 44
PDB header:synthetic peptide
Chain: A: PDB Molecule:peptide corresponding to the major immunogen site of fmd
PDBTitle: synthetic peptide corresponding to the major immunogen site of fmd2 virus, nmr, 10 structures
47c6cslA_
not modelled 6.6 27
PDB header:metal binding protein
Chain: A: PDB Molecule:histidine triad protein d;
PDBTitle: pneumococcal phtd protein 269-339 fragment with bound zn(ii)
48c3b42B_
not modelled 6.6 15
PDB header:signaling protein
Chain: B: PDB Molecule:methyl-accepting chemotaxis protein, putative;
PDBTitle: periplasmic sensor domain of chemotaxis protein gsu0935
49c4hobC_
not modelled 6.3 40
PDB header:dna binding protein
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: the crystal structure of the zalpha domain from cyprinid herpes virus2 3
50c3df0C_
not modelled 6.3 47
PDB header:hydrolase
Chain: C: PDB Molecule:calpastatin;
PDBTitle: calcium-dependent complex between m-calpain and calpastatin
51c2dbbA_
not modelled 6.2 14
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
52c5yz4A_
not modelled 6.2 41
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
53c3r9lA_
not modelled 6.2 11
PDB header:transferase
Chain: A: PDB Molecule:nucleoside diphosphate kinase;
PDBTitle: crystal structure of nucleoside diphosphate kinase from giardia2 lamblia featuring a disordered dinucleotide binding site
54c5jpqd_
not modelled 6.1 37
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
55d1fcda3
not modelled 6.0 27
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
56d1i1ga2
not modelled 5.9 17
Fold:Ferredoxin-like
Superfamily:Dimeric alpha+beta barrel
Family:Lrp/AsnC-like transcriptional regulator C-terminal domain
57c6nbiP_
not modelled 5.9 60
PDB header:signaling protein
Chain: P: PDB Molecule:long-acting parathyroid hormone analog;
PDBTitle: cryo-em structure of parathyroid hormone receptor type 1 in complex2 with a long-acting parathyroid hormone analog and g protein
58c4ep0E_
not modelled 5.9 18
PDB header:structural protein, viral protein
Chain: E: PDB Molecule:major tail protein;
PDBTitle: structure of the bacteriophage c1 tail knob protein, gp12
59c1unvA_
not modelled 5.9 31
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
60c4el8A_
not modelled 5.9 40
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 48;
PDBTitle: the unliganded structure of c.bescii cela gh48 module
61c2a02A_
not modelled 5.8 16
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:ferric-pseudobactin 358 receptor;
PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter pupa from3 pseudomonas putida.
62c1u9fA_
not modelled 5.8 31
PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16)
63c5b3zB_
not modelled 5.8 13
PDB header:isomerase,sugar binding protein
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-interacting 1,
PDBTitle: crystal structure of hpin1 ww domain (5-39) fused with maltose-binding2 protein
64c4mj7B_
not modelled 5.7 22
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
65c1bzgA_
not modelled 5.7 0
PDB header:hormone
Chain: A: PDB Molecule:parathyroid hormone-related protein;
PDBTitle: the solution structure of human parathyroid hormone-related2 protein (1-34) in near-physiological solution, nmr, 303 structures
66c3c52B_
not modelled 5.7 22
PDB header:lyase
Chain: B: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori2 in complex with phosphoglycolohydroxamic acid, a competitive3 inhibitor
67c4i6jB_
not modelled 5.6 33
PDB header:transcription
Chain: B: PDB Molecule:f-box/lrr-repeat protein 3;
PDBTitle: a ubiquitin ligase-substrate complex
68c1u9fC_
not modelled 5.6 31
PDB header:transcription
Chain: C: PDB Molecule:general control protein gcn4;
PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16)
69c1u9fB_
not modelled 5.6 31
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16)
70c1unuB_
not modelled 5.5 31
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
71c1unuA_
not modelled 5.5 31
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
72c1uo5A_
not modelled 5.5 31
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
73d1iyjb4
not modelled 5.4 26
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
74c2nvjA_
not modelled 5.4 40
PDB header:hydrolase
Chain: A: PDB Molecule:25mer peptide from vacuolar atp synthase subunit
PDBTitle: nmr structures of transmembrane segment from subunit a from2 the yeast proton v-atpase
75d1gvfa_
not modelled 5.4 15
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class II FBP aldolase
76c3j3bF_
not modelled 5.4 31
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the human 60s ribosomal proteins
77c1u9fD_
not modelled 5.3 31
PDB header:transcription
Chain: D: PDB Molecule:general control protein gcn4;
PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(15)l(16)
78c2nqcA_
not modelled 5.3 24
PDB header:immune system
Chain: A: PDB Molecule:filamin-c;
PDBTitle: crystal structure of ig-like domain 23 from human filamin c
79d2nqca1
not modelled 5.3 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
80c2e1aD_
not modelled 5.3 12
PDB header:transcription
Chain: D: PDB Molecule:75aa long hypothetical regulatory protein asnc;
PDBTitle: crystal structure of ffrp-dm1
81c1gclA_
not modelled 5.3 31
PDB header:leucine zipper
Chain: A: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
82c1gclB_
not modelled 5.3 31
PDB header:leucine zipper
Chain: B: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
83c1gclC_
not modelled 5.3 31
PDB header:leucine zipper
Chain: C: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
84c1gclD_
not modelled 5.3 31
PDB header:leucine zipper
Chain: D: PDB Molecule:gcn4;
PDBTitle: gcn4 leucine zipper core mutant p-li
85c1untA_
not modelled 5.2 31
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
86c4gyxC_
not modelled 5.2 64
PDB header:structural protein, blood clotting
Chain: C: PDB Molecule:type iii collagen fragment in a host peptide stabilized by
PDBTitle: the von willebrand factor a3 domain binding region of type iii2 collagen stabilized by the cysteine knot
87c1uo2A_
not modelled 5.1 31
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
88c1w5iA_
not modelled 5.1 31
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: aba does not affect topology of pli.
89c5lzkB_
not modelled 5.1 9
PDB header:structural genomics
Chain: B: PDB Molecule:protein fam83b;
PDBTitle: structure of the domain of unknown function duf1669 from human fam83b
90d1ygya3
not modelled 5.1 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
91d2e9xc2
not modelled 5.1 23
Fold:GINS/PriA/YqbF domain
Superfamily:PriA/YqbF domain
Family:PSF3 N-terminal domain-like

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below