Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1813c_(-)_2055688_2056119
DateFri Aug 2 13:30:42 BST 2019
Unique Job ID1182017a7b41df9d
SequenceMITNLRRRTA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.805 Y:30.943 Z:12.888
Model (left) based on template c6j69A_
Top template information
PDB header:cell cycle
Chain: A: PDB Molecule:protein kibra;
PDBTitle: structure of kibra and dendrin complex
Confidence and coverage
Confidence: 66.4% Coverage: 18%
26 residues ( 18% of your sequence) have been modelled with 66.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6j69A_



66.4 23
PDB header:cell cycle
Chain: A: PDB Molecule:protein kibra;
PDBTitle: structure of kibra and dendrin complex
2d1x49a1



53.3 15
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
3c2khxA_



45.6 29
PDB header:gene regulation,nuclear protein
Chain: A: PDB Molecule:ribonuclease 3;
PDBTitle: drosha double-stranded rna binding motif
4d1qu6a2



43.9 27
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
5d1o0wa2



42.5 31
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
6c3adjA_



41.0 35
PDB header:gene regulation
Chain: A: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
7c2n3hA_



40.7 27
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd2 (viz. drb4(81-151))
8d1t4na_



40.0 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
9d1x47a1



39.7 30
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
10c2aivA_



36.9 17
PDB header:transport protein
Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116;
PDBTitle: multiple conformations in the ligand-binding site of the yeast nuclear2 pore targeting domain of nup116p
11d1x48a1



35.8 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
12d1t4lb_



35.3 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
13c2n3gA_



35.3 22
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd1 (viz. drb4(1-72))
14c1t4oA_



33.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of rnt1p dsrbd
15d1t4oa_



33.5 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
16d1qu6a1



32.7 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
17c2mdrA_



28.0 9
PDB header:hydrolase
Chain: A: PDB Molecule:double-stranded rna-specific adenosine deaminase;
PDBTitle: solution structure of the third double-stranded rna-binding domain2 (dsrbd3) of human adenosine-deaminase adar1
18c2q5xA_



27.7 17
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore complex protein nup98;
PDBTitle: crystal structure of the c-terminal domain of hnup98
19c3adiC_



26.5 15
PDB header:gene regulation/rna
Chain: C: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
20d2nuga2



25.7 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
21c3kepA_



not modelled 24.0 24
PDB header:protein transport, rna binding protein
Chain: A: PDB Molecule:nucleoporin nup145;
PDBTitle: crystal structure of the autoproteolytic domain from the nuclear pore2 complex component nup145 from saccharomyces cerevisiae
22c1h2iG_



not modelled 23.3 19
PDB header:dna binding protein
Chain: G: PDB Molecule:dna repair protein rad52 homolog;
PDBTitle: human rad52 protein, n-terminal domain
23d1z1ba1



not modelled 22.8 23
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:lambda integrase N-terminal domain
24c1kjkA_



not modelled 22.8 23
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution structure of the lambda integrase amino-terminal2 domain
25c5yq7H_



not modelled 22.4 27
PDB header:photosynthesis
Chain: H: PDB Molecule:alpha subunit of light-harvesting 1;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
26c5n1tM_



not modelled 19.6 13
PDB header:oxidoreductase
Chain: M: PDB Molecule:copc;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
27c3adlA_



not modelled 19.1 14
PDB header:gene regulation/rna
Chain: A: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: structure of trbp2 and its molecule implications for mirna processing
28c4ce4h_



not modelled 18.8 21
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
29c1vw45_



not modelled 17.7 18
PDB header:ribosome
Chain: 5: PDB Molecule:54s ribosomal protein l3, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
30c4pv3D_



not modelled 17.4 21
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with na+ cations
31d1whna_



not modelled 16.7 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
32d1kn0a_



not modelled 15.7 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:The homologous-pairing domain of Rad52 recombinase
33c2l2nA_



not modelled 15.6 19
PDB header:rna binding protein, plant protein
Chain: A: PDB Molecule:hyponastic leave 1;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for the first2 dsrbd of protein hyl1
34c2lrsA_



not modelled 15.3 29
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease dicer homolog 1;
PDBTitle: the second dsrbd domain from a. thaliana dicer-like 1
35d2cpna1



not modelled 15.0 14
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
36c2zalD_



not modelled 14.0 19
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
37c1ymzA_



not modelled 13.9 24
PDB header:unknown function
Chain: A: PDB Molecule:cc45;
PDBTitle: cc45, an artificial ww domain designed using statistical2 coupling analysis
38c2n3fA_



not modelled 13.2 26
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of both dsrbds of drb4 along with linker (viz.2 drb4(1-153))
39d1uila_



not modelled 13.1 13
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
40c2bzvA_



not modelled 12.7 18
PDB header:viral protein
Chain: A: PDB Molecule:fiber protein 2;
PDBTitle: human enteric adenovirus serotype 41 short fiber head (ph8)
41d1stua_



not modelled 12.3 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
42c4v1ah_



not modelled 11.8 21
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
43d1kaca_



not modelled 11.8 18
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
44c3nf5A_



not modelled 11.8 25
PDB header:protein transport
Chain: A: PDB Molecule:nucleoporin nup116;
PDBTitle: crystal structure of the c-terminal domain of nuclear pore complex2 component nup116 from candida glabrata
45c4oogC_



not modelled 11.7 17
PDB header:hydrolase/rna
Chain: C: PDB Molecule:ribonuclease 3;
PDBTitle: crystal structure of yeast rnase iii (rnt1p) complexed with the2 product of dsrna processing
46c2gezF_



not modelled 11.4 21
PDB header:hydrolase
Chain: F: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
47c6fjqA_



not modelled 11.1 32
PDB header:viral protein
Chain: A: PDB Molecule:fiber;
PDBTitle: adenovirus species 48, fiber knob protein
48c2zalB_



not modelled 11.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
49d1qhva_



not modelled 11.0 32
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
50d1knba_



not modelled 10.9 27
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
51d1di2a_



not modelled 10.9 15
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
52c4xl8B_



not modelled 10.9 23
PDB header:viral protein
Chain: B: PDB Molecule:fiber-1;
PDBTitle: crystal structure of human adenovirus 52 short fiber knob in complex2 with 2-o-methyl-5-n-acetylneuraminic acid
53c6fjoA_



not modelled 10.7 27
PDB header:viral protein
Chain: A: PDB Molecule:fiber;
PDBTitle: adenovirus species 26 knob protein, very high resolution
54c1t3mD_



not modelled 10.6 21
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
55c1jn9B_



not modelled 10.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
56c1t3mB_



not modelled 10.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
57c5zz9E_



not modelled 10.5 44
PDB header:protein binding
Chain: E: PDB Molecule:peptide from drebrin;
PDBTitle: crystal structure of homer2 evh1/drebrin ppxxf complex
58d2j12a1



not modelled 10.0 32
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
59d2q8oa1



not modelled 9.8 13
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
60c2ltsA_



not modelled 9.7 18
PDB header:rna binding protein
Chain: A: PDB Molecule:protein rde-4;
PDBTitle: solution structure of rde-4(150-235)
61c1jn9D_



not modelled 9.4 21
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
62c1k2xB_



not modelled 9.4 21
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
63c1k2xD_



not modelled 9.4 21
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
64d1de3a_



not modelled 9.1 17
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Ribotoxin
65c4kt3B_



not modelled 9.0 13
PDB header:hydrolase
Chain: B: PDB Molecule:putative lipoprotein;
PDBTitle: structure of a type vi secretion system effector-immunity complex from2 pseudomonas protegens
66d1uhza_



not modelled 8.8 25
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
67c3llhB_



not modelled 8.6 27
PDB header:rna binding protein
Chain: B: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: crystal structure of the first dsrbd of tar rna-binding protein 2
68c6htuA_



not modelled 8.5 17
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein staufen homolog 1;
PDBTitle: structure of hstau1 dsrbd3-4 in complex with arf1 rna
69c1qiuC_



not modelled 8.2 32
PDB header:fibre protein
Chain: C: PDB Molecule:adenovirus fibre;
PDBTitle: a triple beta-spiral in the adenovirus fibre shaft reveals a new2 structural motif for biological fibres
70d1bf5a3



not modelled 8.2 23
Fold:SH2-like
Superfamily:SH2 domain
Family:SH2 domain
71c5icuA_



not modelled 7.9 4
PDB header:chaperone
Chain: A: PDB Molecule:copc;
PDBTitle: the crystal structure of copc from methylosinus trichosporium ob3b
72c1p4vA_



not modelled 7.8 32
PDB header:hydrolase
Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase
PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine
73c2o7pA_



not modelled 7.7 28
PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain
74c3zpgA_



not modelled 7.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:ribd;
PDBTitle: acinetobacter baumannii ribd, form 2
75c3rv0B_



not modelled 7.3 21
PDB header:rna binding protein
Chain: B: PDB Molecule:k. polysporus dcr1;
PDBTitle: crystal structure of k. polysporus dcr1 without the c-terminal dsrbd
76d2dixa1



not modelled 7.3 21
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
77c5bpwA_



not modelled 7.3 12
PDB header:cell cycle
Chain: A: PDB Molecule:anaphase-promoting complex subunit 4;
PDBTitle: atomic-resolution structures of the apc/c subunits apc4 and the apc52 n-terminal domain
78d2b7ta1



not modelled 7.2 31
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
79c2xr4A_



not modelled 7.1 26
PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: c-terminal domain of bc2l-c lectin from burkholderia cenocepacia
80d2o39a1



not modelled 7.0 20
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
81d1ixta_



not modelled 6.9 39
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Conotoxin
82c1ixtA_



not modelled 6.9 39
PDB header:toxin
Chain: A: PDB Molecule:spasmodic protein tx9a-like protein;
PDBTitle: structure of a novel p-superfamily spasmodic conotoxin2 reveals an inhibitory cystine knot motif
83c4g4fA_



not modelled 6.8 10
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor ligand superfamily member 18;
PDBTitle: crystal structure of gitrl from bushbaby
84d1ekza_



not modelled 6.8 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
85d2b3za2



not modelled 6.8 22
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
86c2ysbA_



not modelled 6.7 22
PDB header:protein binding
Chain: A: PDB Molecule:salvador homolog 1 protein;
PDBTitle: solution structure of the first ww domain from the mouse2 salvador homolog 1 protein (sav1)
87c5npaA_



not modelled 6.6 18
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd2
88c5cwwA_



not modelled 6.6 20
PDB header:transport protein
Chain: A: PDB Molecule:nucleoporin nup145n;
PDBTitle: crystal structure of the chaetomium thermophilum heterotrimeric nup822 ntd-nup159 tail-nup145n apd complex
89c1vw4d_



not modelled 6.6 14
PDB header:ribosome
Chain: D: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
90c2zakB_



not modelled 6.6 19
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase precursor;
PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation
91c3gb8B_



not modelled 6.6 31
PDB header:transport protein
Chain: B: PDB Molecule:snurportin-1;
PDBTitle: crystal structure of crm1/snurportin-1 complex
92c4gduB_



not modelled 6.4 19
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of sulfate-bound human l-asparaginase protein
93c5hoyA_



not modelled 6.4 33
PDB header:de novo protein
Chain: A: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
94c5hoxC_



not modelled 6.4 33
PDB header:de novo protein
Chain: C: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin.2 synchrotron data set. (lvffaedcgsnkcaii(sar)lmv).
95c5hoyE_



not modelled 6.4 33
PDB header:de novo protein
Chain: E: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
96c5hoxA_



not modelled 6.4 33
PDB header:de novo protein
Chain: A: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin.2 synchrotron data set. (lvffaedcgsnkcaii(sar)lmv).
97c5hoyB_



not modelled 6.4 33
PDB header:de novo protein
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
98c5hoyC_



not modelled 6.4 33
PDB header:de novo protein
Chain: C: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
99c5hoyD_



not modelled 6.4 33
PDB header:de novo protein
Chain: D: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).

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